-
1
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio S., Chapman J., Stupka E., Putnam N., Chia J.M., Dehal P., Christoffels A., Rash S., Hoon S., Smit A., Gelpke M.D., Roach J., Oh T., Ho I.Y., Wong M., Detter C., Verhoef F., Predki P., Tay A., Lucas S., Richardson P., Smith S.F., Clark M.S., Edwards Y.J., and Doggett N., et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297: 1301.
-
(2002)
Science
, vol.297
, pp. 1301
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.M.5
Dehal, P.6
Christoffels, A.7
Rash, S.8
Hoon, S.9
Smit, A.10
Gelpke, M.D.11
Roach, J.12
Oh, T.13
Ho, I.Y.14
Wong, M.15
Detter, C.16
Verhoef, F.17
Predki, P.18
Tay, A.19
Lucas, S.20
Richardson, P.21
Smith, S.F.22
Clark, M.S.23
Edwards, Y.J.24
Doggett, N.25
more..
-
2
-
-
0034756824
-
Comparative genomics of the SOX9 region in human and Fugu rubripes: Conservation of short regulatory sequence elements within large intergenic regions
-
Bagheri-Fam S., Ferraz C., Demaille J., Scherer G., and Pfeifer D. 2001. Comparative genomics of the SOX9 region in human and Fugu rubripes: Conservation of short regulatory sequence elements within large intergenic regions. Genomics 78: 73.
-
(2001)
Genomics
, vol.78
, pp. 73
-
-
Bagheri-Fam, S.1
Ferraz, C.2
Demaille, J.3
Scherer, G.4
Pfeifer, D.5
-
3
-
-
0242418246
-
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
-
Boffelli D., McAuliffe J., Ovcharenko D., Lewis K.D., Ovcharenko I., Pachter L., and Rubin E.M. 2003. Phylogenetic shadowing of primate sequences to find functional regions of the human genome. Science 299: 1391.
-
(2003)
Science
, vol.299
, pp. 1391
-
-
Boffelli, D.1
McAuliffe, J.2
Ovcharenko, D.3
Lewis, K.D.4
Ovcharenko, I.5
Pachter, L.6
Rubin, E.M.7
-
4
-
-
0037027761
-
Comparative genomics: The mouse that roared
-
Boguski M.S. 2002. Comparative genomics: The mouse that roared. Nature 420: 515.
-
(2002)
Nature
, vol.420
, pp. 515
-
-
Boguski, M.S.1
-
5
-
-
0038781885
-
Quantitative estimates of sequence divergence for comparative analyses of mammalian genomes
-
Cooper G.M., Brudno M., Green E.D., Batzoglou S., and Sidow A. 2003. Quantitative estimates of sequence divergence for comparative analyses of mammalian genomes. Genome Res. 13: 813.
-
(2003)
Genome Res.
, vol.13
, pp. 813
-
-
Cooper, G.M.1
Brudno, M.2
Green, E.D.3
Batzoglou, S.4
Sidow, A.5
-
6
-
-
0037263797
-
Strategies and tools for whole-genome alignments
-
Couronne O., Poliakov A., Bray N., Ishkhanov T., Ryaboy D., Rubin E.M., Pachter L., and Dubchak I. 2003. Strategies and tools for whole-genome alignments. Genome Res. 13: 73.
-
(2003)
Genome Res.
, vol.13
, pp. 73
-
-
Couronne, O.1
Poliakov, A.2
Bray, N.3
Ishkhanov, T.4
Ryaboy, D.5
Rubin, E.M.6
Pachter, L.7
Dubchak, I.8
-
7
-
-
2242464840
-
The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
-
Dehal P., Satou Y., Campbell R.K., Chapman J., Degnan B., De Tomaso A., Davidson B., Di Gregorio A., Gelpke M., Goodstein D.M., Harafuji N., Hastings K.E., Ho I., Hotta K., Huang W., Kawashima T., Lemaire P., Martinez D., Meinertzhagen I.A., Necula S., Nonaka M., Putnam N., Rash S., Saiga H., and Satake M., et al. 2002. The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins. Science 298: 2157.
-
(2002)
Science
, vol.298
, pp. 2157
-
-
Dehal, P.1
Satou, Y.2
Campbell, R.K.3
Chapman, J.4
Degnan, B.5
De Tomaso, A.6
Davidson, B.7
Di Gregorio, A.8
Gelpke, M.9
Goodstein, D.M.10
Harafuji, N.11
Hastings, K.E.12
Ho, I.13
Hotta, K.14
Huang, W.15
Kawashima, T.16
Lemaire, P.17
Martinez, D.18
Meinertzhagen, I.A.19
Necula, S.20
Nonaka, M.21
Putnam, N.22
Rash, S.23
Saiga, H.24
Satake, M.25
more..
-
8
-
-
0030927867
-
Searching for regulatory elements in human noncoding sequences
-
Duret L. and Bucher P. 1997. Searching for regulatory elements in human noncoding sequences. Curr. Opin. Struct. Biol. 7: 399.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 399
-
-
Duret, L.1
Bucher, P.2
-
9
-
-
0028920057
-
The apolipoprotein(a) gene is regulated by sex hormones and acute-phase inducers in YAC transgenic mice
-
Frazer K.A., Narla G., Zhang J.L., and Rubin E.M. 1995. The apolipoprotein(a) gene is regulated by sex hormones and acute-phase inducers in YAC transgenic mice. Nat. Genet. 9: 424.
-
(1995)
Nat. Genet.
, vol.9
, pp. 424
-
-
Frazer, K.A.1
Narla, G.2
Zhang, J.L.3
Rubin, E.M.4
-
10
-
-
0037271322
-
Cross-species sequence comparisons: A review of methods and available resources
-
Frazer K.A., Elnitski L., Church D.M., Dubchak I., and Hardison R.C. 2003. Cross-species sequence comparisons: A review of methods and available resources. Genome Res. 13: 1.
-
(2003)
Genome Res.
, vol.13
, pp. 1
-
-
Frazer, K.A.1
Elnitski, L.2
Church, D.M.3
Dubchak, I.4
Hardison, R.C.5
-
11
-
-
0037055269
-
Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences
-
Gilligan P., Brenner S., and Venkatesh B. 2002. Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences. Gene 294: 35.
-
(2002)
Gene
, vol.294
, pp. 35
-
-
Gilligan, P.1
Brenner, S.2
Venkatesh, B.3
-
12
-
-
0036110293
-
Transcriptional regulation of the stem cell leukemia gene (SCL) - Comparative analysis of five vertebrate SCL loci
-
Gottgens B., Barton L.M., Chapman M.A., Sinclair A.M., Knudsen B., Grafham D., Gilbert J.G., Rogers J., Bentley D.R., and Green A.R. 2002. Transcriptional regulation of the stem cell leukemia gene (SCL) - Comparative analysis of five vertebrate SCL loci. Genome Res. 12: 749.
-
(2002)
Genome Res.
, vol.12
, pp. 749
-
-
Gottgens, B.1
Barton, L.M.2
Chapman, M.A.3
Sinclair, A.M.4
Knudsen, B.5
Grafham, D.6
Gilbert, J.G.7
Rogers, J.8
Bentley, D.R.9
Green, A.R.10
-
13
-
-
0034284481
-
Conserved noncoding sequences are reliable guides to regulatory elements
-
Hardison R.C. 2000. Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet. 16: 369.
-
(2000)
Trends Genet.
, vol.16
, pp. 369
-
-
Hardison, R.C.1
-
14
-
-
0030722935
-
Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome
-
Hardison R.C., Oeltjen J., and Miller W. 1997. Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome. Genome Res. 7: 959.
-
(1997)
Genome Res.
, vol.7
, pp. 959
-
-
Hardison, R.C.1
Oeltjen, J.2
Miller, W.3
-
15
-
-
0008393474
-
Apolipoprotein multigene family: Tandem organization of human apolipoprotein AI, CIII, and AIV genes
-
Karathanasis S.K. 1985. Apolipoprotein multigene family: Tandem organization of human apolipoprotein AI, CIII, and AIV genes. Proc. Natl. Acad. Sci. 82: 6374.
-
(1985)
Proc. Natl. Acad. Sci.
, vol.82
, pp. 6374
-
-
Karathanasis, S.K.1
-
16
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander E.S., Linton L.M., Birren B., Nusbaum C., Zody M.C., Baldwin J., Devon K., Dewar K., Doyle M., FitzHugh W., Funke R., Gage D., Harris K., Heaford A., Howland J., Kann L., Lehoczky J., LeVine R., McEwan P., McKernan K., Meldrim J., Mesirov J.P., Miranda C., Morris W., and Naylor J., et al. (International Human Genome Sequencing Consortium). 2001. Initial sequencing and analysis of the human genome. Nature 409: 860.
-
(2001)
Nature
, vol.409
, pp. 860
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
LeVine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
more..
-
17
-
-
0035041537
-
Regulation of IL-4 gene expression by distal regulatory elements and GATA-3 at the chromatin level
-
Lee G.R., Fields P.E., and Flavell R.A. 2001. Regulation of IL-4 gene expression by distal regulatory elements and GATA-3 at the chromatin level. Immunity 14: 447.
-
(2001)
Immunity
, vol.14
, pp. 447
-
-
Lee, G.R.1
Fields, P.E.2
Flavell, R.A.3
-
18
-
-
0034616398
-
Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
-
Loots G.G., Locksley R.M., Blankespoor C.M., Wang Z.E., Miller W., Rubin E.M., and Frazer K.A. 2000. Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 288: 136.
-
(2000)
Science
, vol.288
, pp. 136
-
-
Loots, G.G.1
Locksley, R.M.2
Blankespoor, C.M.3
Wang, Z.E.4
Miller, W.5
Rubin, E.M.6
Frazer, K.A.7
-
19
-
-
0034518158
-
VISTA: Visualizing global DNA sequence alignments of arbitrary length
-
Mayor C., Brudno M., Schwartz J.R., Poliakov A., Rubin E.M., Frazer K.A., Pachter L.S., and Dubchak I. 2000. VISTA: Visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16: 1046.
-
(2000)
Bioinformatics
, vol.16
, pp. 1046
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
Poliakov, A.4
Rubin, E.M.5
Frazer, K.A.6
Pachter, L.S.7
Dubchak, I.8
-
20
-
-
0035555263
-
Deletion of a coordinate regulator of type 2 cytokine expression in mice
-
Mohrs M., Blankespoor C.M., Wang Z.E., Loots G.G., Afzal V., Hadeiba H., Shinkai K., Rubin E.M., and Locksley R.M. 2001. Deletion of a coordinate regulator of type 2 cytokine expression in mice. Nat. Immunol. 2: 842.
-
(2001)
Nat. Immunol.
, vol.2
, pp. 842
-
-
Mohrs, M.1
Blankespoor, C.M.2
Wang, Z.E.3
Loots, G.G.4
Afzal, V.5
Hadeiba, H.6
Shinkai, K.7
Rubin, E.M.8
Locksley, R.M.9
-
21
-
-
0035261381
-
Genomic strategies to identify mammalian regulatory sequences
-
Pennacchio L.A. and Rubin E.M. 2001. Genomic strategies to identify mammalian regulatory sequences. Nat. Rev. Genet. 2: 100.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 100
-
-
Pennacchio, L.A.1
Rubin, E.M.2
-
22
-
-
0037398488
-
Comparative genomic tools and databases: Providing insights into the human genome
-
-. 2003. Comparative genomic tools and databases: Providing insights into the human genome. J. Clin. Invest. 111: 1099.
-
(2003)
J. Clin. Invest.
, vol.111
, pp. 1099
-
-
-
23
-
-
0035812707
-
An apolipoprotein influencing triglycerides in humans and mice revealed by comparative sequencing
-
Pennacchio L.A., Olivier M., Hubacek J.A., Cohen J.C., Cox D.R., Fruchart J.C., Krauss R.M., and Rubin E.M. 2001. An apolipoprotein influencing triglycerides in humans and mice revealed by comparative sequencing. Science 294: 169.
-
(2001)
Science
, vol.294
, pp. 169
-
-
Pennacchio, L.A.1
Olivier, M.2
Hubacek, J.A.3
Cohen, J.C.4
Cox, D.R.5
Fruchart, J.C.6
Krauss, R.M.7
Rubin, E.M.8
-
24
-
-
0026057848
-
Expression of human apolipoprotein A-I in transgenic mice results in reduced plasma levels of murine apolipoprotein A-I and the appearance of two new high density lipoprotein size subclasses
-
Rubin E.M., Ishida B.Y., Clift S.M., and Krauss R.M. 1991. Expression of human apolipoprotein A-I in transgenic mice results in reduced plasma levels of murine apolipoprotein A-I and the appearance of two new high density lipoprotein size subclasses. Proc. Natl. Acad. Sci. 88: 434.
-
(1991)
Proc. Natl. Acad. Sci.
, vol.88
, pp. 434
-
-
Rubin, E.M.1
Ishida, B.Y.2
Clift, S.M.3
Krauss, R.M.4
-
25
-
-
0034020416
-
PipMaker - A web server for aligning two genomic DNA sequences
-
Schwartz S., Zhang Z., Frazer K.A., Smit A., Riemer C., Bouck J., Gibbs R., Hardison R., and Miller W. 2000. PipMaker-A web server for aligning two genomic DNA sequences. Genome Res. 10: 577.
-
(2000)
Genome Res.
, vol.10
, pp. 577
-
-
Schwartz, S.1
Zhang, Z.2
Frazer, K.A.3
Smit, A.4
Riemer, C.5
Bouck, J.6
Gibbs, R.7
Hardison, R.8
Miller, W.9
-
26
-
-
0037020214
-
Sequence first. Ask questions later
-
Sidow A. 2002. Sequence first. Ask questions later. Cell 111: 13.
-
(2002)
Cell
, vol.111
, pp. 13
-
-
Sidow, A.1
-
27
-
-
0037380723
-
Comparative genomics: Genome-wide analysis in metazoan eukaryotes
-
Ureta-Vidal A., Ettwiller L., and Birney E. 2003. Comparative genomics: Genome-wide analysis in metazoan eukaryotes. Nat. Rev. Genet. 4: 251.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 251
-
-
Ureta-Vidal, A.1
Ettwiller, L.2
Birney, E.3
-
28
-
-
0035895505
-
The sequence of the human genome
-
Venter J.C., Adams M.D., Myers E.W., Li P.W., Mural R.J., Sutton G.G., Smith H.O., Yandell M., Evans C.A., Holt R.A., Gocayne J.D., Amanatides P., Ballew R.M., Huson D.H., Wortman J.R., Zhang Q., Kodira C.D., Zheng X.H., Chen L., Skupski M., Subramanian G., Thomas P.D., Zhang J., Gabor Miklos G.L., and Nelson C., et al. 2001. The sequence of the human genome. Science 291: 1304.
-
(2001)
Science
, vol.291
, pp. 1304
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
Gocayne, J.D.11
Amanatides, P.12
Ballew, R.M.13
Huson, D.H.14
Wortman, J.R.15
Zhang, Q.16
Kodira, C.D.17
Zheng, X.H.18
Chen, L.19
Skupski, M.20
Subramanian, G.21
Thomas, P.D.22
Zhang, J.23
Gabor Miklos, G.L.24
Nelson, C.25
more..
-
29
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston R.H., Lindblad-Toh K., Birney E., Rogers J., Abril J.F., Agarwal P., Agarwala R., Ainscough R., Alexandersson M., An P., Antonarakis S.E., Attwood J., Baertsch R., Bailey J., Barlow K., Beck S., Berry E., Birren B., Bloom T., Bork P., Botcherby M., Bray N., Brent M.R., Brown D.G., and Brown S.D., et al. (Mouse Genome Sequencing Consortium). 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520.
-
(2002)
Nature
, vol.420
, pp. 520
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
Antonarakis, S.E.11
Attwood, J.12
Baertsch, R.13
Bailey, J.14
Barlow, K.15
Beck, S.16
Berry, E.17
Birren, B.18
Bloom, T.19
Bork, P.20
Botcherby, M.21
Bray, N.22
Brent, M.R.23
Brown, D.G.24
Brown, S.D.25
more..
|