-
1
-
-
0002537899
-
-
Interscience Press, New York
-
Venulet, J., and van Etten, R. L. (1970) Biochemistry and Pharmacology of the Nitro and Nitroso Group, Vol. 2, Interscience Press, New York.
-
(1970)
Biochemistry and Pharmacology of the Nitro and Nitroso Group
, vol.2
-
-
Venulet, J.1
Van Etten, R.L.2
-
2
-
-
0036890517
-
Protein nitration in cardiovascular diseases
-
Turko, I. V., and Murad, F. (2002) Protein nitration in cardiovascular diseases, Pharmacol. Rev. 54, 619-634.
-
(2002)
Pharmacol. Rev.
, vol.54
, pp. 619-634
-
-
Turko, I.V.1
Murad, F.2
-
3
-
-
0032578514
-
An activity in rat tissues that modifies nitrotyrosine-containing proteins
-
Kamisaki, Y., Wada, K., Bian, K., Balabanli, B., Davis, K., Martin, E., Behbod, F., Lee, Y. C., and Murad, F. (1998) An activity in rat tissues that modifies nitrotyrosine-containing proteins, Proc. Natl. Acad. Sci. U.S.A. 95, 11584-11589.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 11584-11589
-
-
Kamisaki, Y.1
Wada, K.2
Bian, K.3
Balabanli, B.4
Davis, K.5
Martin, E.6
Behbod, F.7
Lee, Y.C.8
Murad, F.9
-
5
-
-
0033151881
-
3-Nitropropionic acid oxidase from horseshoe vetch (Hippocrepis comosa): A novel plant enzyme
-
Hipkin, C. R., Salem, M. A., Simpson, D., and Wainwright, S. J. (1999) 3-nitropropionic acid oxidase from horseshoe vetch (Hippocrepis comosa): A novel plant enzyme, Biochem. J. 340, 491-495.
-
(1999)
Biochem. J.
, vol.340
, pp. 491-495
-
-
Hipkin, C.R.1
Salem, M.A.2
Simpson, D.3
Wainwright, S.J.4
-
6
-
-
0343983913
-
3-Nitropropionate, the toxic substance of Indigofera, is a suicide inactivator of succinate dehydrogenase
-
Alston, T. A., Mela, L., and Bright, H. J. (1977) 3-Nitropropionate, the toxic substance of Indigofera, is a suicide inactivator of succinate dehydrogenase, Proc. Natl. Acad. Sci. U.S.A. 74, 3767-3771.
-
(1977)
Proc. Natl. Acad. Sci. U.S.A.
, vol.74
, pp. 3767-3771
-
-
Alston, T.A.1
Mela, L.2
Bright, H.J.3
-
7
-
-
0028841595
-
Biodegradation of nitroaromatic compounds
-
Spain, J. C. (1995) Biodegradation of nitroaromatic compounds, Annu. Rev. Microbiol. 49, 523-555.
-
(1995)
Annu. Rev. Microbiol.
, vol.49
, pp. 523-555
-
-
Spain, J.C.1
-
8
-
-
85057919382
-
-
CRC Press LLC, Boca Raton, FL
-
Spain, J. C., Hughes, J. B., and Knackmuss, H. J. (2000) Biodegradation of Nitroaromatic Compounds and Explosives, CRC Press LLC, Boca Raton, FL.
-
(2000)
Biodegradation of Nitroaromatic Compounds and Explosives
-
-
Spain, J.C.1
Hughes, J.B.2
Knackmuss, H.J.3
-
9
-
-
0017879037
-
Purification and properties of nitroalkane oxidase from Fusarium oxysporum
-
Kido, T., Hashizume, K., and Soda, K. (1978) Purification and properties of nitroalkane oxidase from Fusarium oxysporum, J. Bacteriol. 133, 53-58.
-
(1978)
J. Bacteriol.
, vol.133
, pp. 53-58
-
-
Kido, T.1
Hashizume, K.2
Soda, K.3
-
10
-
-
0033558778
-
Substrate specificity of a nitroalkane oxidizing enzyme
-
Gadda, G., and Fitzpatrick, P. F. (1999) Substrate specificity of a nitroalkane oxidizing enzyme, Arch. Biochem. Biophys. 363, 309-313.
-
(1999)
Arch. Biochem. Biophys.
, vol.363
, pp. 309-313
-
-
Gadda, G.1
Fitzpatrick, P.F.2
-
12
-
-
0020619048
-
Microbial degradation of trifluralin by Aspergillus carneus, Fusarium oxysporum, and Trichoderma viride
-
Zayed, S. M., Mostafa, I. Y., Farghaly, M. M., Attaby, H. S., Adam, Y. M., and Mahdy, F. M. (1983) Microbial degradation of trifluralin by Aspergillus carneus, Fusarium oxysporum, and Trichoderma viride, J. Environ. Sci. Health B 18, 253-267.
-
(1983)
J. Environ. Sci. Health B
, vol.18
, pp. 253-267
-
-
Zayed, S.M.1
Mostafa, I.Y.2
Farghaly, M.M.3
Attaby, H.S.4
Adam, Y.M.5
Mahdy, F.M.6
-
13
-
-
84954925913
-
2-Nitropropane dioxygenase from Hansenula mrakii: Re-characterization of the enzyme and oxidation of anionic nitroalkanes
-
Kido, T., Tanizawa, K., Inagaki, K., Yoshimura, T., Ishida, M., Hashizume, K., and Soda, K. (1984) 2-Nitropropane dioxygenase from Hansenula mrakii: Re-characterization of the enzyme and oxidation of anionic nitroalkanes, Agric. Biol. Chem. 48, 2549-2554.
-
(1984)
Agric. Biol. Chem.
, vol.48
, pp. 2549-2554
-
-
Kido, T.1
Tanizawa, K.2
Inagaki, K.3
Yoshimura, T.4
Ishida, M.5
Hashizume, K.6
Soda, K.7
-
14
-
-
0031909037
-
Purification, characterization, and mechanism of a flavin mononucleotide-dependent 2-nitropropane dioxygenase from Neurospora crassa
-
Gorlatova, N., Tchorzewski, M., Kurihara, T., Soda, K., and Esaki, N. (1998) Purification, characterization, and mechanism of a flavin mononucleotide-dependent 2-nitropropane dioxygenase from Neurospora crassa, Appl. Environ. Microbiol. 64, 1029-1033.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1029-1033
-
-
Gorlatova, N.1
Tchorzewski, M.2
Kurihara, T.3
Soda, K.4
Esaki, N.5
-
15
-
-
0036453913
-
Cloning, expression, and characterization of a gene encoding nitroalkane-oxidizing enzyme from Streptomyces ansochromogenes
-
Zhang, J., and Tan, H. (2002) Cloning, expression, and characterization of a gene encoding nitroalkane-oxidizing enzyme from Streptomyces ansochromogenes, Eur. J. Biochem. 269, 6302-6307.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 6302-6307
-
-
Zhang, J.1
Tan, H.2
-
16
-
-
0017404362
-
Mechanism of oxidation of nitroethane by glucose oxidase
-
Porter, D. J., and Bright, H. J. (1977) Mechanism of oxidation of nitroethane by glucose oxidase, J. Biol. Chem. 252, 4361-4370.
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 4361-4370
-
-
Porter, D.J.1
Bright, H.J.2
-
17
-
-
0000475128
-
Purification and properties of the glucose oxidase from Asperillus niger
-
Swoboda, B. E., and Massey, V. (1965) Purification and properties of the glucose oxidase from Asperillus niger, J. Biol. Chem. 240, 2209-2215.
-
(1965)
J. Biol. Chem.
, vol.240
, pp. 2209-2215
-
-
Swoboda, B.E.1
Massey, V.2
-
18
-
-
0015785951
-
Direct evidence for carbanions and covalent N5-flavin-carbanion adducts as catalytic intermediates in the oxidation of nitroethane by D-amino acid oxidase
-
Porter, D. J., Voet, J. G., and Bright, H. J. (1973) Direct evidence for carbanions and covalent N5-flavin-carbanion adducts as catalytic intermediates in the oxidation of nitroethane by D-amino acid oxidase, J. Biol. Chem. 248, 4400-4416.
-
(1973)
J. Biol. Chem.
, vol.248
, pp. 4400-4416
-
-
Porter, D.J.1
Voet, J.G.2
Bright, H.J.3
-
19
-
-
0030570782
-
Kinetic mechanism and substrate specificity of nitroalkane oxidase
-
Heasley, C. J., and Fitzpatrick, P. F. (1996) Kinetic mechanism and substrate specificity of nitroalkane oxidase, Biochem. Biophys. Res. Commun. 225, 6-10.
-
(1996)
Biochem. Biophys. Res. Commun.
, vol.225
, pp. 6-10
-
-
Heasley, C.J.1
Fitzpatrick, P.F.2
-
20
-
-
9744277560
-
Nitroalkane oxidase, a carbanion-forming flavoprotein homologous to acyl-CoA dehydrogenase
-
Fitzpatrick, P. F., Orville, A. M., Nagpal, A., and Valley, M. P. (2005) Nitroalkane oxidase, a carbanion-forming flavoprotein homologous to acyl-CoA dehydrogenase, Arch. Biochem. Biophys. 433, 157-165.
-
(2005)
Arch. Biochem. Biophys.
, vol.433
, pp. 157-165
-
-
Fitzpatrick, P.F.1
Orville, A.M.2
Nagpal, A.3
Valley, M.P.4
-
21
-
-
0242416601
-
Isolation and antifungal and antioomycete activities of aerugine produced by Pseudomonas fluorescens strain MM-B16
-
Lee, J. Y., Moon, S. S., and Hwang, B. K. (2003) Isolation and antifungal and antioomycete activities of aerugine produced by Pseudomonas fluorescens strain MM-B16, Appl. Environ. Microbiol. 69, 2023-2031.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2023-2031
-
-
Lee, J.Y.1
Moon, S.S.2
Hwang, B.K.3
-
22
-
-
0032574753
-
Biochemical and physical characterization of the active FAD-containing form of nitroalkane oxidase from Fusarium oxysporum
-
Gadda, G., and Fitzpatrick, P. F. (1998) Biochemical and physical characterization of the active FAD-containing form of nitroalkane oxidase from Fusarium oxysporum, Biochemistry 37, 6154-6164.
-
(1998)
Biochemistry
, vol.37
, pp. 6154-6164
-
-
Gadda, G.1
Fitzpatrick, P.F.2
-
23
-
-
0037022634
-
Cloning of nitroalkane oxidase from Fusarium oxysporum identifies a new member of the acyl-CoA dehydrogenase superfamily
-
Daubner, S. C., Gadda, G., Valley, M. P., and Fitzpatrick, P. F. (2002) Cloning of nitroalkane oxidase from Fusarium oxysporum identifies a new member of the acyl-CoA dehydrogenase superfamily, Proc. Natl. Acad. Sci. U.S.A. 99, 2702-2707.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 2702-2707
-
-
Daubner, S.C.1
Gadda, G.2
Valley, M.P.3
Fitzpatrick, P.F.4
-
24
-
-
0037414458
-
Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence
-
Neuberger, G., Maurer-Stroh, S., Eisenhaber, B., Hartig, A., and Eisenhaber, F. (2003) Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence, J. Mol. Biol. 328, 581-592.
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 581-592
-
-
Neuberger, G.1
Maurer-Stroh, S.2
Eisenhaber, B.3
Hartig, A.4
Eisenhaber, F.5
-
25
-
-
0024528893
-
Peroxisome targeting signal of rat liver acylcoenzyme a oxidase resides at the carboxy terminus
-
Miyazawa, S., Osumi, T., Hashimoto, T., Ohno, K., Miura, S., and Fujiki, Y. (1989) Peroxisome targeting signal of rat liver acylcoenzyme A oxidase resides at the carboxy terminus, Mol. Cell Biol. 9, 83-91.
-
(1989)
Mol. Cell Biol.
, vol.9
, pp. 83-91
-
-
Miyazawa, S.1
Osumi, T.2
Hashimoto, T.3
Ohno, K.4
Miura, S.5
Fujiki, Y.6
-
26
-
-
0032805503
-
Analysis of the peroxisomal acyl-CoA oxidase gene product from Pichia pastoris and determination of its targeting signal
-
Koller, A., Spong, A. P., Luers, G. H., and Subramani, S. (1999) Analysis of the peroxisomal acyl-CoA oxidase gene product from Pichia pastoris and determination of its targeting signal, Yeast 15, 1035-1044.
-
(1999)
Yeast
, vol.15
, pp. 1035-1044
-
-
Koller, A.1
Spong, A.P.2
Luers, G.H.3
Subramani, S.4
-
27
-
-
0034524328
-
Identification of peroxisomal targeting signals in cholesterol biosynthetic enzymes. AA-CoA thiolase, HMG-coA synthase, MPPD, and FPP synthase
-
Olivier, L. M., Kovacs, W., Masuda, K., Keller, G. A., and Krisans, S. K. (2000) Identification of peroxisomal targeting signals in cholesterol biosynthetic enzymes. AA-CoA thiolase, HMG-coA synthase, MPPD, and FPP synthase, J. Lipid Res. 41, 1921-1935.
-
(2000)
J. Lipid Res.
, vol.41
, pp. 1921-1935
-
-
Olivier, L.M.1
Kovacs, W.2
Masuda, K.3
Keller, G.A.4
Krisans, S.K.5
-
28
-
-
0034306863
-
Use of pH and kinetic isotope effects to dissect the effects of substrate size on binding and catalysis by nitroalkane oxidase
-
Gadda, G., Choe, D. Y., and Fitzpatrick, P. F. (2000) Use of pH and kinetic isotope effects to dissect the effects of substrate size on binding and catalysis by nitroalkane oxidase, Arch. Biochem. Biophys. 382, 138-144.
-
(2000)
Arch. Biochem. Biophys.
, vol.382
, pp. 138-144
-
-
Gadda, G.1
Choe, D.Y.2
Fitzpatrick, P.F.3
-
29
-
-
0034673150
-
Mechanism of nitroalkane oxidase: 2. pH and kinetic isotope effects
-
Gadda, G., and Fitzpatrick, P. F. (2000) Mechanism of nitroalkane oxidase: 2. pH and kinetic isotope effects, Biochemistry 39, 1406-1410.
-
(2000)
Biochemistry
, vol.39
, pp. 1406-1410
-
-
Gadda, G.1
Fitzpatrick, P.F.2
-
30
-
-
0038298092
-
Inactivation of nitroalkane oxidase upon mutation of the active site base and rescue with a deprotonated substrate
-
Valley, M. P., and Fitzpatrick, P. F. (2003) Inactivation of nitroalkane oxidase upon mutation of the active site base and rescue with a deprotonated substrate, J. Am. Chem. Soc. 125, 8738-8739.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 8738-8739
-
-
Valley, M.P.1
Fitzpatrick, P.F.2
-
31
-
-
13944254325
-
Establishing the kinetic competency of the cationic imine intermediate in nitroalkane oxidase
-
Valley, M. P., Tichy, S. E., and Fitzpatrick, P. F. (2005) Establishing the kinetic competency of the cationic imine intermediate in nitroalkane oxidase, J. Am. Chem. Soc. 127, 2062-2066.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 2062-2066
-
-
Valley, M.P.1
Tichy, S.E.2
Fitzpatrick, P.F.3
-
32
-
-
0031054970
-
Identification of the naturally occurring flavin of nitroalkane oxidase from fusarium oxysporum as a 5-nitrobutyl-FAD and conversion of the enzyme to the active FAD-containing form
-
Gadda, G., Edmondson, R. D., Russell, D. H., and Fitzpatrick, P. F. (1997) Identification of the naturally occurring flavin of nitroalkane oxidase from fusarium oxysporum as a 5-nitrobutyl-FAD and conversion of the enzyme to the active FAD-containing form, J. Biol. Chem. 272, 5563-5570.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 5563-5570
-
-
Gadda, G.1
Edmondson, R.D.2
Russell, D.H.3
Fitzpatrick, P.F.4
-
33
-
-
0026095584
-
Determination of macromolecular structures from anomalous diffraction of synchrotron radiation
-
Hendrickson, W. A. (1991) Determination of macromolecular structures from anomalous diffraction of synchrotron radiation, Science 254, 51-58.
-
(1991)
Science
, vol.254
, pp. 51-58
-
-
Hendrickson, W.A.1
-
34
-
-
0031058883
-
Phase determination from multiwavelength anomalous diffraction measurements
-
Hendrickson, W. A., and Ogata, C. M. (1997) Phase determination from multiwavelength anomalous diffraction measurements, Methods Enzymol. 276, 494-523.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 494-523
-
-
Hendrickson, W.A.1
Ogata, C.M.2
-
35
-
-
0038613012
-
Reductive half-reaction of nitroalkane oxidase; Effect of mutation of the active site aspartate to glutamate
-
Valley, M. P., and Fitzpatrick, P. F. (2003) Reductive half-reaction of nitroalkane oxidase; Effect of mutation of the active site aspartate to glutamate, Biochemistry 42, 5850-5856.
-
(2003)
Biochemistry
, vol.42
, pp. 5850-5856
-
-
Valley, M.P.1
Fitzpatrick, P.F.2
-
36
-
-
9744229592
-
Crystallization and preliminary analysis of active nitroalkane oxidase in three crystal forms
-
Nagpal, A., Valley, M. P., Fitzpatrick, P. F., and Orville, A. M. (2004) Crystallization and preliminary analysis of active nitroalkane oxidase in three crystal forms, Acta Crystallogr., Sect. D: Biol. Crystallogr. 60, 1456-1460.
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.60
, pp. 1456-1460
-
-
Nagpal, A.1
Valley, M.P.2
Fitzpatrick, P.F.3
Orville, A.M.4
-
37
-
-
0000085607
-
Crystallization experiments with 2-enoyl-CoA hydratase, using an automated "fast-screening" crystallization protocol
-
Zeelen, J. P., Hiltunen, J. K., Ceska, T. A., and Wierenga, R. K. (1994) Crystallization experiments with 2-enoyl-CoA hydratase, using an automated "fast-screening" crystallization protocol, Acta Crystallogr., Sect. D: Biol. Crystallogr. 50, 443-447.
-
(1994)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.50
, pp. 443-447
-
-
Zeelen, J.P.1
Hiltunen, J.K.2
Ceska, T.A.3
Wierenga, R.K.4
-
38
-
-
0033212804
-
The Rossmann Fourier autoindexing algorithm in MOSFLM
-
Powell, H. R. (1999) The Rossmann Fourier autoindexing algorithm in MOSFLM, Acta Crystallogr., Sect. D: Biol. Crystallogr. 55, 1690-1695.
-
(1999)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.55
, pp. 1690-1695
-
-
Powell, H.R.1
-
40
-
-
0347696954
-
Chymotrypsinogen: A three-dimensional Fourier synthesis at 5 Å resolution
-
Kraut, J., Sieker, L. C., High, D. F., and Freer, S. T. (1962) Chymotrypsinogen: A three-dimensional Fourier synthesis at 5 Å resolution, Proc. Natl. Acad. Sci. U.S.A. 48, 1417-1424.
-
(1962)
Proc. Natl. Acad. Sci. U.S.A.
, vol.48
, pp. 1417-1424
-
-
Kraut, J.1
Sieker, L.C.2
High, D.F.3
Freer, S.T.4
-
41
-
-
0026817874
-
Identification of heavy-atom derivatives by normal probability methods
-
Howell, L., and Smith, D. (1992) Identification of heavy-atom derivatives by normal probability methods, J. Appl. Crystallogr. 25, 81-86.
-
(1992)
J. Appl. Crystallogr.
, vol.25
, pp. 81-86
-
-
Howell, L.1
Smith, D.2
-
42
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project (1994) The CCP4 suite: Programs for protein crystallography, Acta Crystallogr., Sect. D: Biol. Crystallogr. 50, 760-763.
-
(1994)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
43
-
-
0033119895
-
Automated MAD and MIR structure solution
-
Terwilliger, T. C., and Berendzen, J. (1999) Automated MAD and MIR structure solution, Acta Crystallogr., Sect. D: Biol. Crystallogr. 55, 849-861.
-
(1999)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.55
, pp. 849-861
-
-
Terwilliger, T.C.1
Berendzen, J.2
-
44
-
-
0031058188
-
Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
-
de la Fortelle, E., and Bricogne, G. (1997) Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods, Methods Enzymol. 276, 472-494.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 472-494
-
-
De La Fortelle, E.1
Bricogne, G.2
-
45
-
-
0030038464
-
Methods used in the structure determination of bovine mitochondrial F1 ATPase
-
Abrahams, J. P., and Leslie, A. G. W. (1996) Methods used in the structure determination of bovine mitochondrial F1 ATPase, Acta Crystallogr., Sect. D: Biol. Crystallogr. 52, 30-42.
-
(1996)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.52
, pp. 30-42
-
-
Abrahams, J.P.1
Leslie, A.G.W.2
-
46
-
-
0035210945
-
Maximum-likelihood density modification using pattern recognition of structural motifs
-
Terwilliger, T. C. (2001) Maximum-likelihood density modification using pattern recognition of structural motifs, Acta Crystallogr., Sect. D: Biol. Crystallogr. 57, 1755-1762.
-
(2001)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.57
, pp. 1755-1762
-
-
Terwilliger, T.C.1
-
47
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models, Acta Crystallogr., Sect. A: Found. Crystallogr. 47, 110-119.
-
(1991)
Acta Crystallogr., Sect. A: Found. Crystallogr.
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
48
-
-
7544226311
-
PRODRG - A tool for high-throughput crystallography of protein-ligand complexes
-
Schuettelkopf, A. W., and van Aalten, D. M. F. (2004) PRODRG-A tool for high-throughput crystallography of protein-ligand complexes, Acta Crystallogr., Sect. D: Biol. Crystallogr. 60, 1355-1363.
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.60
, pp. 1355-1363
-
-
Schuettelkopf, A.W.1
Van Aalten, D.M.F.2
-
49
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography and NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr., Sect. D: Biol. Crystallogr. 54, 905-921.
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
50
-
-
0000560808
-
MOLREP: An automated program for molecular replacement
-
Vagin, A., and Teplyakov, A. (1997) MOLREP: An automated program for molecular replacement, J. Appl. Crystallogr. 30, 1022-1025.
-
(1997)
J. Appl. Crystallogr.
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
51
-
-
0027412196
-
ALSCRIPT - A tool to format multiple sequence alignments
-
Barton, G. J. (1993) ALSCRIPT-A tool to format multiple sequence alignments, Protein Eng. 6, 37-40.
-
(1993)
Protein Eng.
, vol.6
, pp. 37-40
-
-
Barton, G.J.1
-
52
-
-
31544446766
-
-
DeLano, W. L. (2001), DeLano Scientific, San Carlos, CA
-
DeLano, W. L. (2001), DeLano Scientific, San Carlos, CA.
-
-
-
-
53
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex, N., and Peitsch, M. C. (1997) SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling, Electrophoresis 18, 2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
54
-
-
0042011224
-
Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals
-
Kantardjieff, K. A., and Rupp, B. (2003) Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals, Protein Sci. 12, 1865-1871.
-
(2003)
Protein Sci.
, vol.12
, pp. 1865-1871
-
-
Kantardjieff, K.A.1
Rupp, B.2
-
55
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews, B. W. (1968) Solvent content of protein crystals, J. Mol. Biol. 33, 491-497.
-
(1968)
J. Mol. Biol.
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
56
-
-
0001143446
-
Structure of the medium-chain acyl-CoA dehydrogenase from pig liver mitochondria at 3 Å resolution
-
Kim, J. J., and Wu, J. (1988) Structure of the medium-chain acyl-CoA dehydrogenase from pig liver mitochondria at 3 Å resolution, Proc. Natl. Acad. Sci. U.S.A. 85, 6677-6681.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 6677-6681
-
-
Kim, J.J.1
Wu, J.2
-
57
-
-
0027304244
-
Crystal structures of medium-chain acyl-CoA dehydrogenase from pig liver mitochondria with and without substrate
-
Kim, J. J., Wang, M., and Paschke, R. (1993) Crystal structures of medium-chain acyl-CoA dehydrogenase from pig liver mitochondria with and without substrate, Proc. Natl. Acad. Sci. U.S.A. 90, 7523-7527.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 7523-7527
-
-
Kim, J.J.1
Wang, M.2
Paschke, R.3
-
58
-
-
0842265784
-
Acyl-CoA dehydrogenases and acyl-CoA oxidases. Structural basis for mechanistic similarities and differences
-
Kim, J. J., and Miura, R. (2004) Acyl-CoA dehydrogenases and acyl-CoA oxidases. Structural basis for mechanistic similarities and differences, Eur. J. Biochem. 271, 483-493.
-
(2004)
Eur. J. Biochem.
, vol.271
, pp. 483-493
-
-
Kim, J.J.1
Miura, R.2
-
59
-
-
0034644665
-
Identification of a cysteine residue in the active site of nitroalkane oxidase by modification with N-ethylmaleimide
-
Gadda, G., Banerjee, A., Dangott, L. J., and Fitzpatrick, P. F. (2000) Identification of a cysteine residue in the active site of nitroalkane oxidase by modification with N-ethylmaleimide, J. Biol. Chem. 275, 31891-31895.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 31891-31895
-
-
Gadda, G.1
Banerjee, A.2
Dangott, L.J.3
Fitzpatrick, P.F.4
-
60
-
-
0034620511
-
Identification of an essential tyrosine residue in nitroalkane oxidase by modification with tetranitromethane
-
Gadda, G., Banerjee, A., and Fitzpatrick, P. F. (2000) Identification of an essential tyrosine residue in nitroalkane oxidase by modification with tetranitromethane, Biochemistry 39, 1162-1168.
-
(2000)
Biochemistry
, vol.39
, pp. 1162-1168
-
-
Gadda, G.1
Banerjee, A.2
Fitzpatrick, P.F.3
-
61
-
-
0037063502
-
Estimates of the ab initio limit for π-π interactions: The benzene dimer
-
Sinnokrot, M. O., Valeev, E. F., and Sherrill, C. D. (2002) Estimates of the ab initio limit for π-π interactions: The benzene dimer, J. Am. Chem. Soc. 124, 10887-10893.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 10887-10893
-
-
Sinnokrot, M.O.1
Valeev, E.F.2
Sherrill, C.D.3
-
62
-
-
0035954388
-
Role of aromatic stacking interactions in the modulation of the two-electron reduction potentials of flavin and substrate/product in Megasphaera elsdenii short-chain acyl-coenzyme A dehydrogenase
-
Pellett, J. D., Becker, D. F., Saenger, A. K., Fuchs, J. A., and Stankovich, M. T. (2001) Role of aromatic stacking interactions in the modulation of the two-electron reduction potentials of flavin and substrate/product in Megasphaera elsdenii short-chain acyl-coenzyme A dehydrogenase, Biochemistry 40, 7720-7728.
-
(2001)
Biochemistry
, vol.40
, pp. 7720-7728
-
-
Pellett, J.D.1
Becker, D.F.2
Saenger, A.K.3
Fuchs, J.A.4
Stankovich, M.T.5
-
63
-
-
2742564848
-
Studies on flavin derivatives: The crystal structure of 1,10-ethylene-7,8-dimethylisoalloxazinium iodide monohydrate
-
Leijonmarck, M., and Werner, P.-E. (1970) Studies on flavin derivatives: The crystal structure of 1,10-ethylene-7,8-dimethylisoalloxazinium iodide monohydrate, Acta Chem. Scand. 24, 2916-2928.
-
(1970)
Acta Chem. Scand.
, vol.24
, pp. 2916-2928
-
-
Leijonmarck, M.1
Werner, P.-E.2
-
64
-
-
0021759003
-
Reinvestigation of the structure of oxidized and reduced flavin: Carbon-13 and nitrogen-15 nuclear magnetic resonance study
-
Moonen, C. T., Vervoort, J., and Müller, F. (1984) Reinvestigation of the structure of oxidized and reduced flavin: Carbon-13 and nitrogen-15 nuclear magnetic resonance study, Biochemistry 23, 4859-4867.
-
(1984)
Biochemistry
, vol.23
, pp. 4859-4867
-
-
Moonen, C.T.1
Vervoort, J.2
Müller, F.3
-
65
-
-
0021759008
-
Carbon-13 nuclear magnetic resonance study on the dynamics of the conformation of reduced flavin
-
Moonen, C. T., Vervoort, J., and Müller, F. (1984) Carbon-13 nuclear magnetic resonance study on the dynamics of the conformation of reduced flavin, Biochemistry 23, 4868-4872.
-
(1984)
Biochemistry
, vol.23
, pp. 4868-4872
-
-
Moonen, C.T.1
Vervoort, J.2
Müller, F.3
-
66
-
-
0032725979
-
Crystal structure of reduced thioredoxin reductase from Escherichia coli: Structural flexibility in the isoalloxazine ring of the flavin adenine dinucleotide cofactor
-
Lennon, B. W., Williams, C. H., Jr., and Ludwig, M. L. (1999) Crystal structure of reduced thioredoxin reductase from Escherichia coli: Structural flexibility in the isoalloxazine ring of the flavin adenine dinucleotide cofactor, Protein Sci. 8, 2366-2379.
-
(1999)
Protein Sci.
, vol.8
, pp. 2366-2379
-
-
Lennon, B.W.1
Williams Jr., C.H.2
Ludwig, M.L.3
-
67
-
-
0000632684
-
Studies on flavin derivatives: The crystal structure of 5-diethyl-3,7,8,10-tetramethyl-1,5-dihydroisoalloxazine trihydrate
-
Werner, P.-E., Linnros, B., and Leijonmarck, M. (1971) Studies on flavin derivatives: The crystal structure of 5-diethyl-3,7,8,10-tetramethyl-1,5- dihydroisoalloxazine trihydrate, Acta Chem. Scand. 25, 1297-1312.
-
(1971)
Acta Chem. Scand.
, vol.25
, pp. 1297-1312
-
-
Werner, P.-E.1
Linnros, B.2
Leijonmarck, M.3
-
68
-
-
0035814939
-
Structural bases for inhibitor binding and catalysis in polyamine oxidase
-
Binda, C., Angelini, R., Federico, R., Ascenzi, P., and Mattevi, A. (2001) Structural bases for inhibitor binding and catalysis in polyamine oxidase, Biochemistry 40, 2766-2776.
-
(2001)
Biochemistry
, vol.40
, pp. 2766-2776
-
-
Binda, C.1
Angelini, R.2
Federico, R.3
Ascenzi, P.4
Mattevi, A.5
-
69
-
-
0042693016
-
Insights into the mode of inhibition of human mitochondrial monoamine oxidase B from high-resolution crystal structures
-
Binda, C., Li, M., Hubalek, F., Restelli, N., Edmondson, D. E., and Mattevi, A. (2003) Insights into the mode of inhibition of human mitochondrial monoamine oxidase B from high-resolution crystal structures, Proc. Natl. Acad. Sci. U.S.A. 100, 9750-9755.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 9750-9755
-
-
Binda, C.1
Li, M.2
Hubalek, F.3
Restelli, N.4
Edmondson, D.E.5
Mattevi, A.6
-
70
-
-
0842330598
-
Acyl-CoA dehydrogenases. A mechanistic overview
-
Ghisla, S., and Thorpe, C. (2004) Acyl-CoA dehydrogenases. A mechanistic overview, Eur. J. Biochem. 271, 494-508.
-
(2004)
Eur. J. Biochem.
, vol.271
, pp. 494-508
-
-
Ghisla, S.1
Thorpe, C.2
-
71
-
-
9644273915
-
Acyl-CoA oxidase 1 from Arabidopsis thaliana. Structure of a key enzyme in plant lipid metabolism
-
Pedersen, L., and Henriksen, A. (2005) Acyl-CoA oxidase 1 from Arabidopsis thaliana. Structure of a key enzyme in plant lipid metabolism, J. Mol. Biol. 345, 487-500.
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 487-500
-
-
Pedersen, L.1
Henriksen, A.2
-
72
-
-
0036221422
-
Three-dimensional structure of the flavoenzyme acyl-CoA oxidase-II from rat liver, the peroxisomal counterpart of mitochondrial acyl-CoA dehydrogenase
-
Nakajima, Y., Miyahara, I., Hirotsu, K., Nishina, Y., Shiga, K., Setoyama, C., Tamaoki, H., and Miura, R. (2002) Three-dimensional structure of the flavoenzyme acyl-CoA oxidase-II from rat liver, the peroxisomal counterpart of mitochondrial acyl-CoA dehydrogenase, J. Biochem. 131, 365-374.
-
(2002)
J. Biochem.
, vol.131
, pp. 365-374
-
-
Nakajima, Y.1
Miyahara, I.2
Hirotsu, K.3
Nishina, Y.4
Shiga, K.5
Setoyama, C.6
Tamaoki, H.7
Miura, R.8
-
73
-
-
0242663236
-
Crystal structure of an acyl-ACP dehydrogenase from the FK520 polyketide biosynthetic pathway: Insights into extender unit biosynthesis
-
Watanabe, K., Khosla, C., Stroud, R. M., and Tsai, S. C. (2003) Crystal structure of an acyl-ACP dehydrogenase from the FK520 polyketide biosynthetic pathway: Insights into extender unit biosynthesis, J. Mol. Biol. 334, 435-444.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 435-444
-
-
Watanabe, K.1
Khosla, C.2
Stroud, R.M.3
Tsai, S.C.4
-
74
-
-
3342953763
-
Crystal structures of human glutaryl-CoA dehydrogenase with and without an alternate substrate: Structural bases of dehydrogenation and decarboxylation reactions
-
Fu, Z., Wang, M., Paschke, R., Rao, K. S., Frerman, F. E., and Kim, J. J. (2004) Crystal structures of human glutaryl-CoA dehydrogenase with and without an alternate substrate: Structural bases of dehydrogenation and decarboxylation reactions, Biochemistry 43, 9674-9684.
-
(2004)
Biochemistry
, vol.43
, pp. 9674-9684
-
-
Fu, Z.1
Wang, M.2
Paschke, R.3
Rao, K.S.4
Frerman, F.E.5
Kim, J.J.6
-
75
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel, E., and Henrick, K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions, Acta Crystallogr., Sect. D: Biol. Crystallogr. 60, 2256-2268.
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
76
-
-
12444298922
-
Structure of the transition state analog of medium-chain acyl-CoA dehydrogenase. Crystallographic and molecular orbital studies on the charge-transfer complex of medium-chain acyl-CoA dehydrogenase with 3-thiaoctanoyl-CoA
-
Satoh, A., Nakajima, Y., Miyahara, I., Hirotsu, K., Tanaka, T., Nishina, Y., Shiga, K., Tamaoki, H., Setoyama, C., and Miura, R. (2003) Structure of the transition state analog of medium-chain acyl-CoA dehydrogenase. Crystallographic and molecular orbital studies on the charge-transfer complex of medium-chain acyl-CoA dehydrogenase with 3-thiaoctanoyl-CoA, J. Biochem. 134, 297-304.
-
(2003)
J. Biochem.
, vol.134
, pp. 297-304
-
-
Satoh, A.1
Nakajima, Y.2
Miyahara, I.3
Hirotsu, K.4
Tanaka, T.5
Nishina, Y.6
Shiga, K.7
Tamaoki, H.8
Setoyama, C.9
Miura, R.10
|