메뉴 건너뛰기




Volumn 49, Issue 2, 2006, Pages 85-96

Genome-wide analysis of differentially expressed genes from Penicillium chrysogenum grown with a repressing or a non-repressing carbon source

Author keywords

Carbon regulation; Differential expression; Gene expression; Genomes; Penicillium chrysogenum; Subtractive hybridization

Indexed keywords

CARBON; FUNGAL RNA; GLUCOSE; GLUCOSE TRANSPORTER; HYDROLASE; ISOPENICILLIN N SYNTHETASE; LACTOSE;

EID: 31444453410     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00294-005-0029-y     Document Type: Article
Times cited : (14)

References (44)
  • 1
    • 0026800606 scopus 로고
    • Penicillin and cephalosporin biosynthetic genes: Structure, organization, regulation, and evolution
    • Aharanowitz Y, Cohen G, Martín JF (1992) Penicillin and cephalosporin biosynthetic genes: Structure, organization, regulation, and evolution. Annu Rev Microbiol 46:461-495
    • (1992) Annu Rev Microbiol , vol.46 , pp. 461-495
    • Aharanowitz, Y.1    Cohen, G.2    Martín, J.F.3
  • 3
    • 0033929128 scopus 로고    scopus 로고
    • Overexpression of the lys1 gene in Penicillium chrysogenum: Homocitrate synthase levels, α-aminoadipic acid pool and penicillin production
    • Bañuelos O, Casqueiro J, Gutiérrez S, Martín JF (2000) Overexpression of the lys1 gene in Penicillium chrysogenum: homocitrate synthase levels, α-aminoadipic acid pool and penicillin production. Appl Microbiol Biotechnol 54:69-77
    • (2000) Appl Microbiol Biotechnol , vol.54 , pp. 69-77
    • Bañuelos, O.1    Casqueiro, J.2    Gutiérrez, S.3    Martín, J.F.4
  • 4
    • 0024538826 scopus 로고
    • Cloning, sequence analysis and transcriptional study of the isopenicillin N synthase of Penicillium chrysogenum AS-P-78
    • Barredo JL, Cantoral JM, Álvarez E, Díez B, Martín JF (1989a) Cloning, sequence analysis and transcriptional study of the isopenicillin N synthase of Penicillium chrysogenum AS-P-78. Mol Gen Genet 216:91-98
    • (1989) Mol Gen Genet , vol.216 , pp. 91-98
    • Barredo, J.L.1    Cantoral, J.M.2    Álvarez, E.3    Díez, B.4    Martín, J.F.5
  • 6
    • 0031717488 scopus 로고    scopus 로고
    • Molecular regulation of β-lactam biosynthesis in filamentous fungi
    • Brakhage AA (1998) Molecular regulation of β-lactam biosynthesis in filamentous fungi. Microbiol Mol Biol Rev 62:547-585
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 547-585
    • Brakhage, A.A.1
  • 7
    • 0028009523 scopus 로고
    • The thioredoxin system of Penicillium chrysogenum and its possible role in penicillin biosynthesis
    • Cohen G, Argaman A, Schreiber R, Mislovati M, Aharonowitz Y (1994) The thioredoxin system of Penicillium chrysogenum and its possible role in penicillin biosynthesis. J Bacteriol 176:973-984
    • (1994) J Bacteriol , vol.176 , pp. 973-984
    • Cohen, G.1    Argaman, A.2    Schreiber, R.3    Mislovati, M.4    Aharonowitz, Y.5
  • 9
    • 0025026399 scopus 로고
    • The cluster of penicillin biosynthetic genes. Identification and characterization of the pcbAB gene encoding the α-aminoadipyl-cysteinil-valine synthetase and linkage to the pcbC and penDE genes
    • Díez B, Gutiérrez S, Barredo J, van Solingen P, van der Vort LHM, Martín JF (1990) The cluster of penicillin biosynthetic genes. Identification and characterization of the pcbAB gene encoding the α-aminoadipyl-cysteinil-valine synthetase and linkage to the pcbC and penDE genes. J Biol Chem 265:16358-16365
    • (1990) J Biol Chem , vol.265 , pp. 16358-16365
    • Díez, B.1    Gutiérrez, S.2    Barredo, J.3    van Solingen, P.4    van der Vort, L.H.M.5    Martín, J.F.6
  • 10
    • 0037441736 scopus 로고    scopus 로고
    • High-throughput confirmation of differential display PCR results using reverse Northern blotting
    • Dilks DW, Ring RH, Khawaja XZ, Novak TJ, Aston C (2003) High-throughput confirmation of differential display PCR results using reverse Northern blotting. J Neurosci Methods 123:47-54
    • (2003) J Neurosci Methods , vol.123 , pp. 47-54
    • Dilks, D.W.1    Ring, R.H.2    Khawaja, X.Z.3    Novak, T.J.4    Aston, C.5
  • 11
    • 0028054214 scopus 로고
    • A reporter gene analysis of penicillin biosynthesis gene expression in Penicillium chrysogenum and its regulation by nitrogen and glucose catabolite repression
    • Feng B, Friedlin E, Marzluf GA (1994) A reporter gene analysis of penicillin biosynthesis gene expression in Penicillium chrysogenum and its regulation by nitrogen and glucose catabolite repression. Appl Environ Microbiol 60:4432-4439
    • (1994) Appl Environ Microbiol , vol.60 , pp. 4432-4439
    • Feng, B.1    Friedlin, E.2    Marzluf, G.A.3
  • 12
    • 0027135227 scopus 로고
    • Resolution of four large chromosomes in penicillin producing filamentous fungi: The penicillin gene cluster is located on chromosome II (9.6 Mb) in Penicillium notatum and chromosome I (10.4 Mb) in Penicillium chrysogenum
    • Fierro F, Gutiérrez S, Díez B, Martín JF (1993) Resolution of four large chromosomes in penicillin producing filamentous fungi: The penicillin gene cluster is located on chromosome II (9.6 Mb) in Penicillium notatum and chromosome I (10.4 Mb) in Penicillium chrysogenum. Mol Gen Genet 241:573-578
    • (1993) Mol Gen Genet , vol.241 , pp. 573-578
    • Fierro, F.1    Gutiérrez, S.2    Díez, B.3    Martín, J.F.4
  • 14
    • 0030070112 scopus 로고    scopus 로고
    • Mutants blocked in penicillin biosynthesis show a deletion of the entire penicillin gene cluster at a specific site within a conserved hexanucleotide sequence
    • Fierro F, Montenegro E, Gutiérrez S, Martín JF (1996) Mutants blocked in penicillin biosynthesis show a deletion of the entire penicillin gene cluster at a specific site within a conserved hexanucleotide sequence. Appl Microbiol Biotechnol 44:597-604
    • (1996) Appl Microbiol Biotechnol , vol.44 , pp. 597-604
    • Fierro, F.1    Montenegro, E.2    Gutiérrez, S.3    Martín, J.F.4
  • 15
    • 31444432554 scopus 로고    scopus 로고
    • Sulfur-containing β-lactam antibiotics: Enzymes, genes and regulation of the biosynthesis
    • Fierro F, Martín JF (eds) Research Signpost, Trivandrum
    • Fierro F, Martín JF, Kosalková K (2002) Sulfur-containing β-lactam antibiotics: Enzymes, genes and regulation of the biosynthesis. In: Fierro F, Martín JF (eds) Microbial secondary metabolites: Biosynthesis, genetics and regulation. Research Signpost, Trivandrum, pp 179-210
    • (2002) Microbial Secondary Metabolites: Biosynthesis, Genetics and Regulation , pp. 179-210
    • Fierro, F.1    Martín, J.F.2    Kosalková, K.3
  • 16
    • 0031810672 scopus 로고    scopus 로고
    • Yeast carbon catabolite repression
    • Gancedo JM (1998) Yeast carbon catabolite repression. Microb Mol Biol Rev 62:334-361
    • (1998) Microb Mol Biol Rev , vol.62 , pp. 334-361
    • Gancedo, J.M.1
  • 17
    • 0030586931 scopus 로고    scopus 로고
    • Equalizing cDNA substraction based on selective suppression of polymerase chain reaction: Cloning of Jurkat cell transcripts induced by phytohemaglutinin and phorbol 12-myristate 13-acetate
    • Gurskaya N, Diatchenko L, Chenchik A, Siebert P, Khaspekov G, Lukyanov K, Vagner L, Ermolaeva O, Lukyanov S, Sverdlov E (1996) Equalizing cDNA substraction based on selective suppression of polymerase chain reaction: Cloning of Jurkat cell transcripts induced by phytohemaglutinin and phorbol 12-myristate 13-acetate. Anal Biochem 240:90-97
    • (1996) Anal Biochem , vol.240 , pp. 90-97
    • Gurskaya, N.1    Diatchenko, L.2    Chenchik, A.3    Siebert, P.4    Khaspekov, G.5    Lukyanov, K.6    Vagner, L.7    Ermolaeva, O.8    Lukyanov, S.9    Sverdlov, E.10
  • 18
    • 0025904272 scopus 로고
    • Characterization of the Cephalosporium acremonium pcbAB gene encoding α-aminoadipyl-cysteinyl-valine synthetase, a large multidomain peptide synthetase: Linkage to the pcbC gene as a cluster of early cephalosporin biosynthetic genes and evidence of multiple functional domains
    • Gutiérrez S, Díez B, Montenegro E, Martín JF (1991) Characterization of the Cephalosporium acremonium pcbAB gene encoding α-aminoadipyl-cysteinyl-valine synthetase, a large multidomain peptide synthetase: Linkage to the pcbC gene as a cluster of early cephalosporin biosynthetic genes and evidence of multiple functional domains. J Bacteriol 173:2354-2365
    • (1991) J Bacteriol , vol.173 , pp. 2354-2365
    • Gutiérrez, S.1    Díez, B.2    Montenegro, E.3    Martín, J.F.4
  • 19
    • 0026632661 scopus 로고
    • The cefG gene of Cephalosporium acremonium is linked to the cefEF gene and encodes a deacetylcephalosporin C acetyltransferase closely related to homoserine O -acetyltransferase
    • Gutiérrez S, Velasco J, Fernández FJ, Martín JF (1992) The cefG gene of Cephalosporium acremonium is linked to the cefEF gene and encodes a deacetylcephalosporin C acetyltransferase closely related to homoserine O -acetyltransferase. J Bacteriol 174:3056-3064
    • (1992) J Bacteriol , vol.174 , pp. 3056-3064
    • Gutiérrez, S.1    Velasco, J.2    Fernández, F.J.3    Martín, J.F.4
  • 20
    • 18144451613 scopus 로고    scopus 로고
    • Transcription of the pcbAB, pcbC and penDE genes of Penicillium chrysogenum AS-P-78 is repressed by glucose and the repression is not reversed by alkaline pHs
    • Gutiérrez S, Marcos AT, Casqueiro J, Kosalkova K, Fernández FJ, Velasco J, Martín JF (1999) Transcription of the pcbAB, pcbC and penDE genes of Penicillium chrysogenum AS-P-78 is repressed by glucose and the repression is not reversed by alkaline pHs. Microbiology 145:317-324
    • (1999) Microbiology , vol.145 , pp. 317-324
    • Gutiérrez, S.1    Marcos, A.T.2    Casqueiro, J.3    Kosalkova, K.4    Fernández, F.J.5    Velasco, J.6    Martín, J.F.7
  • 22
    • 0034723253 scopus 로고    scopus 로고
    • A novel heptameric sequence (TTAGTAA) is the binding site for a protein required for high level expression of pcbAB, the first gene of the penicillin biosynthesis in Penicillium chrysogenum
    • Kosalková K, Marcos AT, Fierro F, Hernando-Rico V, Gutiérrez S, Martín JF (2000) A novel heptameric sequence (TTAGTAA) is the binding site for a protein required for high level expression of pcbAB, the first gene of the penicillin biosynthesis in Penicillium chrysogenum. J Biol Chem 275:2423-2430
    • (2000) J Biol Chem , vol.275 , pp. 2423-2430
    • Kosalková, K.1    Marcos, A.T.2    Fierro, F.3    Hernando-Rico, V.4    Gutiérrez, S.5    Martín, J.F.6
  • 23
    • 0036193358 scopus 로고    scopus 로고
    • Production of penicillin by fungi growing on food products: Identification of a complete penicillin cluster in Penicillium griseofulvum and a truncated cluster in Penicillium verrucosum
    • Laich F, Fierro F, Martín JF (2002) Production of penicillin by fungi growing on food products: Identification of a complete penicillin cluster in Penicillium griseofulvum and a truncated cluster in Penicillium verrucosum. Appl Environ Microbiol 68:1211-1219
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1211-1219
    • Laich, F.1    Fierro, F.2    Martín, J.F.3
  • 24
    • 0030968716 scopus 로고    scopus 로고
    • Yeast metallothionein gene expression in response to metals and oxidative stress
    • Liu X, Thiele D (1997) Yeast metallothionein gene expression in response to metals and oxidative stress. Methods: A companion to Methods Enzymol 11:289-299
    • (1997) Methods: A Companion to Methods Enzymol , vol.11 , pp. 289-299
    • Liu, X.1    Thiele, D.2
  • 25
    • 0035117592 scopus 로고    scopus 로고
    • Targeted inactivation of the mecB gene encoding cystathionine-γ-lyase shows that the transsulfuration pathway is required for high level cephalosporin biosynthesis in Acremonium chrysogenum C10 but not for methionine-induction of the cephalosporin genes
    • Liu G, Casqueiro J, Bañuelos O, Cardoza RE, Gutiérrez S, Martín JF (2001) Targeted inactivation of the mecB gene encoding cystathionine-γ-lyase shows that the transsulfuration pathway is required for high level cephalosporin biosynthesis in Acremonium chrysogenum C10 but not for methionine-induction of the cephalosporin genes. J Bacteriol 183:1765-1772
    • (2001) J Bacteriol , vol.183 , pp. 1765-1772
    • Liu, G.1    Casqueiro, J.2    Bañuelos, O.3    Cardoza, R.E.4    Gutiérrez, S.5    Martín, J.F.6
  • 26
    • 0030940265 scopus 로고    scopus 로고
    • rco-3, a gene involved in glucose transport and conidiation in Neurospora crassa
    • Madi L, McBride SA, Bailey LA, Ebbole DJ (1997) rco-3, a gene involved in glucose transport and conidiation in Neurospora crassa. Genetics 146:499-508
    • (1997) Genetics , vol.146 , pp. 499-508
    • Madi, L.1    McBride, S.A.2    Bailey, L.A.3    Ebbole, D.J.4
  • 27
    • 0034003889 scopus 로고    scopus 로고
    • Molecular control of expression of penicillin biosynthesis genes in fungi: Regulatory proteins interact with a bidirectional promoter region
    • Martín JF (2000) Molecular control of expression of penicillin biosynthesis genes in fungi: Regulatory proteins interact with a bidirectional promoter region. J Bacteriol 182:2355-2362
    • (2000) J Bacteriol , vol.182 , pp. 2355-2362
    • Martín, J.F.1
  • 28
    • 0033057423 scopus 로고    scopus 로고
    • Penicillin and cephalosporin biosynthesis: Mechanism of carbon catabolite regulation of penicillin production
    • Martín JF, Casqueiro J, Kosalková K, Marcos AT, Gutiérrez S (1999) Penicillin and cephalosporin biosynthesis: mechanism of carbon catabolite regulation of penicillin production. Antonie Van Leeuwenhoek 75:21-31
    • (1999) Antonie Van Leeuwenhoek , vol.75 , pp. 21-31
    • Martín, J.F.1    Casqueiro, J.2    Kosalková, K.3    Marcos, A.T.4    Gutiérrez, S.5
  • 29
    • 0025835309 scopus 로고
    • The regulation and nature of the cyanide-resistant alternative oxidase of plant mitochondria
    • Moore A, Siedow J (1991) The regulation and nature of the cyanide-resistant alternative oxidase of plant mitochondria. Biochim Biophys Acta 1059:121-140
    • (1991) Biochim Biophys Acta , vol.1059 , pp. 121-140
    • Moore, A.1    Siedow, J.2
  • 30
    • 0035212521 scopus 로고    scopus 로고
    • The conversion of pipecolic acid into lisine in Penicillium chrysogenum requires pipecolate oxidase and saccharopine reductase: Characterization of the lys7 gene encoding saccharopine reductase
    • Naranjo L, Martín de Valmaseda E, Bañuelos O, López P, Riaño J, Casqueiro J, Martín JF (2001) The conversion of pipecolic acid into lisine in Penicillium chrysogenum requires pipecolate oxidase and saccharopine reductase: Characterization of the lys7 gene encoding saccharopine reductase. J Bacteriol 183:7165-7172
    • (2001) J Bacteriol , vol.183 , pp. 7165-7172
    • Naranjo, L.1    Martín de Valmaseda, E.2    Bañuelos, O.3    López, P.4    Riaño, J.5    Casqueiro, J.6    Martín, J.F.7
  • 32
    • 0028079589 scopus 로고
    • Cloning and characterisation of the cytochrome C gene of Aspergillus nidulans
    • Raitt DC, Bradshaw RE, Pillar TM (1994) Cloning and characterisation of the cytochrome C gene of Aspergillus nidulans. Mol Gen Genet 242:17-22
    • (1994) Mol Gen Genet , vol.242 , pp. 17-22
    • Raitt, D.C.1    Bradshaw, R.E.2    Pillar, T.M.3
  • 33
    • 0021260976 scopus 로고
    • Carbon catabolite expresión of penicillin biosíntesis by Penicillium chrysogenum
    • Revilla G, López-Nieto MJ, Martín JF (1984) Carbon catabolite expresión of penicillin biosíntesis by Penicillium chrysogenum. J Antibiot 37:781-789
    • (1984) J Antibiot , vol.37 , pp. 781-789
    • Revilla, G.1    López-Nieto, M.J.2    Martín, J.F.3
  • 34
    • 0022971322 scopus 로고
    • Glucose represses formation of δ-(l-α-aminoadipyl)-l- cysteinyl-d-valine and isopenicillin N synthase but not penicillin acyltransferase in Penicillium chrysogenum
    • Revilla G, Ramos FR, López-Nieto MJ, Álvarez E, Martín JF (1986) Glucose represses formation of δ- (l-α-aminoadipyl)-l-cysteinyl-d-valine and isopenicillin N synthase but not penicillin acyltransferase in Penicillium chrysogenum. J Bacteriol 168:947-952
    • (1986) J Bacteriol , vol.168 , pp. 947-952
    • Revilla, G.1    Ramos, F.R.2    López-Nieto, M.J.3    Álvarez, E.4    Martín, J.F.5
  • 36
    • 0028835605 scopus 로고
    • Glucose repression in fungi
    • Ronne H (1995) Glucose repression in fungi. Trends Genet 11:12-17
    • (1995) Trends Genet , vol.11 , pp. 12-17
    • Ronne, H.1
  • 38
    • 0033000330 scopus 로고    scopus 로고
    • Std1 and Mth1 proteins interact with the glucose sensors to control glucose-regulated gene expression in Saccharomyces cerevisiae
    • Schmidt MC, McCartney R, Zhang X, Tillman T, Solimeo H, Wölfl S, Almonte C, Watkins S (1999) Std1 and Mth1 proteins interact with the glucose sensors to control glucose-regulated gene expression in Saccharomyces cerevisiae. Mol Cell Biol 19:4561-4571
    • (1999) Mol Cell Biol , vol.19 , pp. 4561-4571
    • Schmidt, M.C.1    McCartney, R.2    Zhang, X.3    Tillman, T.4    Solimeo, H.5    Wölfl, S.6    Almonte, C.7    Watkins, S.8
  • 39
    • 0034663499 scopus 로고    scopus 로고
    • The mitochondrial cyanide-resistant oxidase: Structural conservation amid regulatory diversity
    • Siedow J, Umback A (2000) The mitochondrial cyanide-resistant oxidase: structural conservation amid regulatory diversity. Biochim Biophys Acta 1459:432-439
    • (2000) Biochim Biophys Acta , vol.1459 , pp. 432-439
    • Siedow, J.1    Umback, A.2
  • 40
    • 0000193267 scopus 로고    scopus 로고
    • Identification and cloning of differentially expressed genes
    • Soares MB (1997) Identification and cloning of differentially expressed genes. Curr Opin Biotechnol 8:542-546
    • (1997) Curr Opin Biotechnol , vol.8 , pp. 542-546
    • Soares, M.B.1
  • 41
    • 0001378651 scopus 로고
    • Reversal of lysine inhibition of penicillin production by α-aminoadipic acid
    • Somerson NL, Demain AL, Nunheimer TD (1961) Reversal of lysine inhibition of penicillin production by α-aminoadipic acid. Arch Biochem 93:238-241
    • (1961) Arch Biochem , vol.93 , pp. 238-241
    • Somerson, N.L.1    Demain, A.L.2    Nunheimer, T.D.3
  • 42
    • 0037500087 scopus 로고    scopus 로고
    • Metabolic engineering of β-lactam production
    • Thykaer J, Nielsen J (2003) Metabolic engineering of β-lactam production. Metab Engineer 5:56-69
    • (2003) Metab Engineer , vol.5 , pp. 56-69
    • Thykaer, J.1    Nielsen, J.2
  • 43
    • 0030854707 scopus 로고    scopus 로고
    • A high throughput screening for rarely transcribed differentially expressed genes
    • Von Stein O, Thies W-G, Hofmann M (1997) A high throughput screening for rarely transcribed differentially expressed genes. Nucleic Acids Res 25:2598-2602
    • (1997) Nucleic Acids Res , vol.25 , pp. 2598-2602
    • Von Stein, O.1    Thies, W.-G.2    Hofmann, M.3
  • 44
    • 23744516546 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in leaf and root between wheat hybrid and its parental inbreds using PCR-based cDNA subtraction
    • Yao Y, Ni Z, Zhang Y, Chen Y, Ding Y, Han Z, Liu Z, Sun Q (2005) Identification of differentially expressed genes in leaf and root between wheat hybrid and its parental inbreds using PCR-based cDNA subtraction. Plant Mol Biol 58:367-384
    • (2005) Plant Mol Biol , vol.58 , pp. 367-384
    • Yao, Y.1    Ni, Z.2    Zhang, Y.3    Chen, Y.4    Ding, Y.5    Han, Z.6    Liu, Z.7    Sun, Q.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.