Development of PCR markers for the P15/P18 locus for resistance to Plasmopara halstedii in sunflower, Helianthus annuus L. from complete CC-NBS-LRR sequences

Theoretical and Applied Genetics

Volumn 109, Issue 1, 2004, Pages 176-185

  Radwan, O ^a   Bouzidi, M F ^a   Nicolas, P ^a   Mouzeyar, S ^a  

^a Diversity and Ecophysiology of Cereals   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; CROPS; DISEASES; GENES; PLANTS (BOTANY);

GENE CLUSTERS; RESISTANCE GENES ANALOGS (RGA); SEQUENCE TAGGED SITES (STS);

GENETIC ENGINEERING;

COMPLEMENTARY DNA; PRIMER DNA;

AMINO ACID SEQUENCE; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; DNA SEQUENCE; GENETIC MARKER; GENETICS; INNATE IMMUNITY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID AMPLIFICATION; NUCLEOTIDE SEQUENCE; OOMYCETES; PLANT DISEASE; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE TAGGED SITE; SOUTHERN BLOTTING; SUNFLOWER;

AMINO ACID SEQUENCE; BASE SEQUENCE; BLOTTING, SOUTHERN; CHROMOSOME MAPPING; DNA PRIMERS; DNA, COMPLEMENTARY; GENETIC MARKERS; HELIANTHUS; IMMUNITY, NATURAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; OOMYCETES; PLANT DISEASES; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE TAGGED SITES;

HELIANTHUS; HELIANTHUS ANNUUS; PERONOSPORA FARINOSA; PLASMOPARA; PLASMOPARA HALSTEDII;

EID: 3142771441     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-004-1613-0     Document Type: Article

References (49)

1. Altschul SF, Madden TL, Schaffer AA, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Aravind L, Dixit VM, Koonin EV (1999) The domains of death: evolution of the apoptosis machinery. Trends Biochem Sci 24:47-53
3. Ballvora A, Ercolano MR, Welis J, Meksem K, Bormann CA, Oberbagemann P, Salamini F, Gebhardt C (2002) The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes. Plant J 30:361-371
4. Bent AF (1996) Plant disease resistance genes - function meets structure. Plant Cell 8:1757-1771
5. Bent AF, Kunkel BN, Dahlbeck D, Brown KL, Schmidt R, Girauda J, Leung J, Staskawicz BJ (1994) RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes. Science 265:1856-1860
6. Bert PF, Tourvielle De Labrouhe D, Philippon J, Mouzeyar S, Jouan I, Nicolas P, Vear F (2001) Identification of a second linkage group carrying genes controlling resistance to downy mildew (Plasmopara halstedii) in sunflower (Helianthus annuus L.). Theor Appl Genet 103:992-997
7. Biezen EA van der, Jones JDG (1998) The NB-ARC domain: a novel signaling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 8:226-227
8. Bittner-Eddy P, Crute IR, Holub EB, Beynon JL (2000) RPP13 is a simple locus in Arabidopsis thaliana for alleles that specify downy mildew resistance to different avirulence determinants in Peronospora parasitica. Plant J 21:177-188
9. Bogorad L, Gubbins EJ, Krebbers E, Larrinua IM, Mulligan BJ, Muskavitch KMT, Orr EA, Rodermel SR, Schantz R, Steinmetz AA, de Vos G, Ye YK (1983) Cloning and physical mapping of maize plastid genes. Methods Enzymol 97:524-554
10. Bouzidi MF, Badaoui S, Cambon F, Vear F, Tourvielle de Labrouhe D, Nicolas P, Mouzeyar S (2002) Molecular analysis of a major locus for resistance to downy mildew in sunflower with specific PCR-based markers. Theor Appl Genet 104:592-600
11. Brunner S, Keller B, Feuillet C (2000) Molecular mapping of the Rph7.g leaf rust resistance gene in barley (Hordeum vulgare L.). Theor Appl Genet 101:783-788
12. Flor HH (1955) Host-parasite interaction in flax rust: its genetics and other implications. Phytopathology 45:680-685
13. Gedil MA, Slabaugh MB, Berry S, Johnson R, Michelmore R, Miller J, Gulya T, Knapp SJ (2001) Candidate disease resistance genes in sunflower cloned using conserved nucleotide binding site motifs: genetic mapping and linkage to the downy mildew resistance gene Pl1. Genome 44:205-212
14. Gentzbittel L, Mestries E, Mouzeyar S, Mazeyrat F, Badaui S, Vear F, Tourvieille de Labrouhe D, Nicolas P (1999) A composite map of expressed sequences and phenotypic traits of the sunflower (Helianthus annuus L.) genome. Theor Appl Genet 99:218-234
15. Grant MR, Godiard L, Straube E, Ashfield T, Lewald J, Sattler A, Innes RW, Dangl JL (1995) Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance. Science 269:843-846
16. Hammond-Kosack KE, Jones JDG (1997) Plant disease resistance genes. Annu Rev Plant Physiol Mol Biol 48:575-607
17. Hammond-Kosack KE, Parker JE (2003) Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Curr Opin Biotechnol 14:177-193
18. Hehl R, Faurie E, Hesselbach J, Salamini F, Whitham S, Barker B, Gebhardt C (1999) TMV resistance gene N homologues are linked to Synchytrium endobioticum resistance in potato. Theor Appl Genet 98:379-386
19. Heyes AJ, Saghai Marrof MA (2000) Targeted resistance gene mapping in soybean using modified AFLPs. Theor Appl Genet 100:1279-1283
20. Jones DA, Thomas CM, Hammond-Kosack KE, Balintkurti PJ, Jones JDG (1994) Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging. Science 266:789-793
21. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
22. Lawrence GJ, Finnegan EJ, Ayliffe MA, Ellis JG (1995) The L6 gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N. Plant Cell 7:1195-1206
23. Lawson WR, Goulter KC, Henry RJ, Kong GA, Kochman JK (1998) Marker-assisted selection for two rust resistance genes in sunflower. Mol Breed 4:227-234
24. Meyers BC, Chin DB, Shen KA, Sivaramakrishnan S, Lavelle DO, Zhang Z, Michelmore RW (1998) The major resistance gene cluster in lettuce is highly duplicated and spans several megabases. Plant Cell 10:1817-1832
25. Meyers BC, Dickerman AW, Michelmore RW, Pecherer RM, Sivaramakrishnan S, Sobral B, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide binding super family. Plant J 20:317-332
26. Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8:1113-1130
27. Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease resistance genes by bulked segregant analysis: a rapid method to markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88:9828-9832
28. Miller JF, Gulya TJ (1991) Inheritance of resistance to race 4 of downy mildew derived from interspecific crosses in sunflower. Crop Sci 31:40-43
29. Milligan SB, Bodeau J, Yajhoobi J, Kalohian I, Zabel P, Williamson VM (1998) The root nematode resistance gene Mi from tomato is a member of leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes. Plant Cell 10:1307-1319
30. Mindrinos M, Katagiri, Yu GL, Ausubel FM (1994) The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide binding site and leucine-reach repeats. Cell 78:1089-1099
31. Mouzeyar S, Tourvieille De Labrouhe D, Vear F (1994) Effect of host-race combination on resistance of sunflower (Helianthus annuus L.) to downy mildew (Plasmopara halistedii). J Phytopathol 141:249-258
32. Nicholas KB, Nicholas HB, Deerfield DW (1997) EMBnet News 4:14
33. Ori N, Eshed Y, Paran I, Presting G, Aviv D, Tanksley S, Zamir D, Fluhr R (1997) The I2C family from the wilt disease resistance locus I2 belongs to the nucleotide binding, leuciene-rich repeat superfamily of plant resistance genes. Plant Cell 9:521-532
34. Pan QL, Wendel J, Fluhr R (2000) Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes. J Mol Evol 50:203-213
35. Parker JE, Holub EB, Frost LN, Falk A, Gunn ND, Daniels MJ (1996) Characterization of eds 1, a mutation in Arabidopsis suppressing resistance to Peronospora parasitica specified by several different RPP genes. Plant Cell 8:2033-2046
36. Radwan O, Bouzidi MF, Vear F, Philippon J, Tourvieille de Labrouhe D, Nicolas P, Mouzeyar S (2003) Identification of non-TIR-NBS-LRR markers linked to PL5/PL8 locus for resistance to downy mildew in sunflower. Theor Appl Genet 106:1438-1446
37. Saghai Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Sci USA 81:8014-8018
38. Sato S, Nakmura Y, Kaneko T, Katoh T, Asamizu E, Tabata S (2000) Structural analysis of Arabidopsis thaliana chromosome 3 1. Sequence features of the regions of 4,504,864 bp covered by 60 P1 and TAC clones. DNA Res 7:131-135
39. Sela-Burrlage MB, Budai-Hadrian O, Pan Q, Carmel-Goren L, Vunsch R, Zamir D, Fluhr R (2001) Genome wide dissection of Fusarium resistance in tomato reveals multiple complex loci. Mol Genet Genomics 265:1104-1111
40. Shen KA, Meyers BC, Islam-Faridi MN, Chin DB, Stelly DM, Michelmore RW (1998) Resistance gene candidates identified by PCR with degenerate oligonucleotide primers map clusters of resistance genes in lettuce. Mol Plant Microbe Interact 11:815-823
41. Shen KA, Chin DB, Arroyo-Garcia R, Ochoa OF, Lavelle DO, Wroblewski T, Meyers BG, Michelmore RW (2002) Dm3 is one member of a large constitutively expressed family of nucleotide binding site-leucine-rich repeat encoding genes. Mol Plant Microbe Interact 3:251-261
42. Song WY, Xang GL, Chen LL (1995) A receptor kinase-like protein encoded by the rice resistance gene, Xa21. Science 270:1804-1806
43. Staskawicz BJ, Ausubel FM, Baker BJ, Ellis JG, Jones JDG (1995) Molecular-genetics of plant disease resistance. Science 268:661-667
44. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgens DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
45. Vear F, Gentzbittel L, Philippon J, Mouzeyar S, Mestries E, Roeckel-Drevet P, Tourvieille De Labrouhe D, Nicolas P (1997) The genetics of resistance to five races of downy mildew (Plasmopara halstedii). Theor Appl Genet 95:584-589
46. Webb CA, Richter TE, Collins NC, Nicolas M, Trick HN, Pryor T, Hulbert SH (2002) Genetic and molecular characterization of the maize rp3 rust resistance locus. Genetics 162:381-394
47. Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, Baker B (1994) The product of tobacco mosaic virus resistance gene N: similarity to Toll and interleukin-1 receptor. Cell 78:1101-1115
48. Williams CE, Wang B, Holsten TE, Scambray J, de Assis Goes da Silva F, Ronald PC (1996) Markers for selection of rice Xa21 disease resistance gene. Theor Appl Genet 93:1119-1122
49. Yu JK, Tang S, Slabaugh MB, Heesacker A, Cole G, Herring MJ, Soper J, Han F, Chu WC, Webb DM, Thompson L, Edwards KJ, Berry S, Leon A, Olungu C, Macs N, Knapp SJ (2003) Towards a saturated molecular genetic linkage map for cultivated sunflower. Crop Sci 43:367-387