Molecular analysis of a major locus for resistance to downy mildew in sunflower with specific PCR-based markers

Theoretical and Applied Genetics

Volumn 104, Issue 4, 2002, Pages 592-600

  Bouzidi, M F ^a   Badaoui, S ^a   Cambon, F ^a   Vear, F ^b   De Labrouhe, D Tourvielle ^b   Nicolas, P ^a   Mouzeyar, Said ^a  

^a Diversity and Ecophysiology of Cereals   (France)

^b CEMAGREF   (France)

Author keywords

Disease resistance; Helianthus annuus; Molecular markers; Nucleotide binding site (NBS); Plasmopara halstedii; Toll Interleukin 1 Receptor (TIR)

Indexed keywords

CLONING; DISEASES;

PRIMERS;

GENES;

EMBRYOPHYTA; HELIANTHUS; HELIANTHUS ANNUUS; PERONOSPORA FARINOSA; PLASMOPARA; PLASMOPARA HALSTEDII;

EID: 0036955804     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-001-0790-3     Document Type: Article

References (33)

1. Altschul SF, Madden TL, Shaffer AA, Zhang J, Zhang Z, Miller, W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer EL (2000) The Pfam protein families database. Nucleic Acids Res 28:263-266
3. Bert PF, Tourvieille de Labrouhe D, Philippon J, Mouzeyar S, Jouan I, Nicolas P, Vear F (2001) Identification of a second group of genes controlling resistance to downy mildew (Plasmopara halstedii) in sunflower (Helianthus annuus L). Theor Appl Genet (in press)
4. Bogorad L, Gubbins EJ, Krebbers E, Larrinua IM, Mulligan BJ, Muskavitch KMT, Orr EA, Rodermel SR, Schantz R, Steinmetz AA, de Vos G, Ye YK (1983) Cloning and physical mapping of maize plastid genes. Methods Enzymol 97:524-554
5. Botella MA, Parker JE, Frost LN, Bittner-Eddy PD, Beynon JL, Daniels MJ, Holub EB, Jones JDG (1998) Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. Plant Cell 10:1847-1860
6. Brunner S, Keller B, Feuillet C (2000) Molecular mapping of the Rph7.g leaf rust resistance gene in barley (Hordeum vulgare L.). Theor Appl Genet 101:783-788
7. Burge C, Karlin S (1997) Prediction of complete gene structures in human genomic DNA. J Mol Biol 268:78-94
8. Ellis JG, Jones D (1998) Structure and function of proteins controlling strain-specific pathogen resistance in plants. Curr Opin Plant Biol 1:288-293
9. Gentzbittel L, Mouzeyar S, Badaoui S, Mestrie E, Vear F, Tourvieille de Labrouhe D, Nicolas P (1998) Cloning and molecular markers for disease resistance in sunflower, Helianthus annuus L. Theor Appl Genet 96:519-525
10. Gentzbittel L, Mestries E, Mouzeyar S, Mazeyrat F, Badaoui S, Vear F, Tourvieille de Labrouhe D, Nicolas P (1999) A composite map of expressed sequences and phenotypic traits of the sunflower (Helianthus annuus L.) genome. Theor Appl Genet 99:218-234
11. Hayes AJ, Saghai Marrof MA (2000) Targeted resistance gene mapping in soybean using modified AFLPs. Theor Appl Genet 100:1279-1283
12. Hehl R, Faurie E, Hesselbach J, Salamini F, Whitham S, Baker B, Gebhardt C (1999) TMV resistance gene N homologues are linked to Synchytrium endobioticum resistance in potato. Theor Appl Genet 98:379-386
13. Kanazin V, Marek LF, Shoemaker RC (1996) Resistance gene analogs are conserved and clustered in soybean. Proc Natl Acad Sci USA 93:11746-11750
14. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural popullations. Genomics 1:174-181
15. Lawrence GJ, Finnegan EJ, Ayliffe MA, Ellis JG (1995) The L6 gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N. Plant Cell 7:1195-1206
16. Leister D, Ballvora A, Salamini F, Gephardt C (1996) A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants. Nature Genet 14:421-428
17. Martin GB (1999) Functional analysis of plant disease resistance genes and their downstream effectors. Curr Opin Plant Biol 2:273-279
18. Meyers BC, Chin DB, Shen KA, Sivaramakrishnan S, Lavelle DO, Zhang Z, Michelmore RW (1998a) The major resistance gene cluster in lettuce is highly duplicated and spans several megabases. Plant Cell 10:1817-1832
19. Meyers BC, Shen KA, Rohani P, Gaut BS and Michelmore RW (1998b) Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell 10:1833-1846
20. Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20:317-332
21. Michelmore RW (2000) Genomic approaches to plant disease resistance. Curr Opin Plant Biol 3:125-131
22. Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomes. Proc Natl Acad Sci USA 88:9828-32
23. Miller JF, Gulya TJ (1991) Inheritance of resistance to race 4 of downy mildew derived from interspecific crosses in sunflower. Crop Sci 31:40-43
24. Mindrinos M, Katagiri F, Yu GL, Ausubel FM (1994) The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide binding site and leucine-rich repeats. Cell 78:1089-1099
25. Nicholas KB, Nicholas HB, Deerfield, DW (1997) EMBnet News 4:14
26. Noël L, Moores TL, van der Biezen EA, Parniske, Daniels MJ, Parker JE, Jones JDG (1999) Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis. Plant Cell 11:2099-2112
27. Saghai Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81:8014-8018
28. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgens DG (1997) The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
29. Vear F, Gentzbittel L, Philippon J, Mouzeyar S, Mestries E, Roeckel-Drevet P, Tourvieille De Labrouhe D, Nicolas P (1997) The genetics of resistance to five races of downy mildew (Plasmopara halstedii) in sunflower (Helianthus annuus). Theor Appl Genet 95:584-589
30. Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, Baker B (1994) The product of tobacco mosaic virus resistance gene N: Similarity to Toll and the interleukin- 1 receptor. Cell 78:1101-1115
31. Williams CE, Wang B, Holsten TE, Scambray J, de Assis Goes da Silva F, Ronald PC (1996) Markers for selection of the rice Xa21 disease resistance gene. Theor Appl Genet 93:1119-1122
32. Yoshimura S, Yamanouchi U, Katayose Y, Toki S, Wang ZX, Kono I, Kurata N, Yano M, Iwata N, Sasaki T (1998) Expression of Xal, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc Natl Acad Sci USA 95:1663-1668
33. Yu YG, Buss GR, Maroof MA (1996) Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site. Proc Natl Acad Sci USA 93:11751-11756