Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones

DNA Research

Volumn 7, Issue 2, 2000, Pages 131-135

  Sato, Shusei ^a   Nakamura, Yasukazu ^a   Kaneko, Takakazu ^a   Katoh, Tomohiko ^a   Asamizu, Erika ^a   Tabata, Satoshi ^a  

^a KAZUSA DNA RESEARCH INSTITUTE   (Japan)

Author keywords

Arabidopsis thaliana chromosome 3; Gene prediction; Genomic sequence; P1 genomic library; TAC genomic library

Indexed keywords

ARABIDOPSIS THALIANA;

ARABIDOPSIS; ARTICLE; CHROMOSOME; DNA SEQUENCE; GENE; GENETICS; METABOLISM;

ARABIDOPSIS; CHROMOSOMES; GENES, PLANT; SEQUENCE ANALYSIS, DNA;

EID: 0034724503     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/7.2.131     Document Type: Article

References (24)

1. Lin, X., Kaul, S., Rounsley, S. et al. 1999, Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana, Nature, 402, 761-768.
2. Mayer, M., Schüller, C., Wambutt, R. et al. 1999, Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana, Nature, 402, 769-777.
3. Kotani, H., Sato, S., Liu, Y-G. et al. 1997, A fine physical map of Arabidopsis thaliana chromosome 5: Construction of a sequence-ready contig map, DNA Res., 4, 371-378.
4. Sato, S., Kotani, H., Hayashi, R. et al. 1998, A physical map of Arabidopsis thaliana chromosome 3 represented by two contigs of CIC YAC, P1, TAC and BAC clones, DNA Res., 5, 163-168.
5. Sato, S., Kaneko, T., Kotani, H. et al. 1999, A sequence-ready contig map of the top arm of Arabidopsis thaliana chromosome, DNA Res., 6, 117-121.
6. Sato, S., Kotani, H., Nakamura, Y. et al. 1997, Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones, DNA Res., 4, 215-230.
7. Kotani, H., Nakamura, Y., Sato, S. et al. 1997, Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones, DNA Res., 4, 291-300.
8. Nakamura, Y., Sato, S., Kaneko, T. et al. 1997, Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones, DNA Res., 4, 401-414.
9. Sato, S., Kaneko, T., Kotani, H. et al. 1998, Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones, DNA Res., 5, 41-54.
10. Kaneko, T., Kotani, H., Nakamura, Y. et al. 1998, Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones, DNA Res., 5, 131-145.
11. Kotani, H., Nakamura, Y., Sato, S. et al. 1998, Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones, DNA Res., 5, 203-216.
12. Nakamura, Y., Sato, S., Asamizu, E. et al. 1998, Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones, DNA Res., 5, 297-308.
13. Asamizu, E., Sato, S., Kaneko, T. et al. 1998, Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones, DNA Res., 5, 379-391.
14. Kaneko, T., Kato, T., Sato, S. et al. 1999, Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence features of the regions of 1,011,550 bp covered by seventeen P1 and TAC clones, DNA Res., 6, 183-195.
15. Sato, S., Nakamura, Y., Kaneko, T. et al. 2000, Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones, DNA Res., 7, 31-63.
16. Liu, Y.-G., Mitsukawa, N., Vazquez-Tello, A., and Whittier, R. F. 1995, Generation of a high-quality P1 library of Arabidopsis suitable for chromosome walking. Plant J., 7, 351-358.
17. Liu, Y.-G., Shirano, Y., Fukaki, H. et al. 1999, Complementation of plant mutants with large genomic DNA fragments by a transformation-competent artificial chromosome vector accelerates positional cloning, Proc. Natl. Acad. Sci. USA, 96, 6535-6540.
18. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403-410.
19. Uberbacher, E. C. and Mural, R. J. 1991, Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach, Proc. Natl. Acad. Sci. USA, 88, 11261-11205.
20. Burge, C. and Karlin, S. 1997, Prediction of complete gene structures in human genomic DNA, J. Mol. Biol., 268, 78-94.
21. Hebsgaard, S. M., Korning, P. G., Tolstrup, N. et al. 1996, Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information, Nucl. Acids Res., 24, 3439-3452.
22. Newman, T., Bruijn, F. J., and Green, P. 1991, Genes galore: A summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones, Plant Physiol., 106, 1211-1255.
23. Cooke, R., Raynal, M., Laudié, M. et al. 1996. Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs, Plant J., 9, 101-124.
24. Lowe, T. M. and Eddy, S. R. 1997, tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence, Nucl. Acids Res., 25, 955-964.