Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes

Journal of Molecular Evolution

Volumn 50, Issue 3, 2000, Pages 203-213

  Pan, Qilin ^a   Wendel, Jonathan ^b   Fluhr, Robert ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

^b IOWA STATE UNIVERSITY   (United States)

Author keywords

Evolution; Innate immunity; Plant disease resistance genes

Indexed keywords

INTERLEUKIN RECEPTOR; VEGETABLE PROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CEREAL; DISEASE RESISTANCE; GENE STRUCTURE; IMMUNITY; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT; UNINDEXED SEQUENCE;

ANIMALIA; EMBRYOPHYTA; MAGNOLIOPHYTA;

EID: 0343352530     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002399910023     Document Type: Article

References (50)

1. Aarts MGM, Hekkert BT, Holub EB, Beynon JL, Stiekema WJ, Pereira A (1998a) Identification of R-gene homologous DNA fragments genetically linked to disease resistance loci in Arabidopsis thaliana. Mol Plant-Microbe Interact 11:251-258
2. Aarts N, Metz M, Holub E, Staskawicz BJ, Daniels MJ, Parker JE (1998b) Different requirements for EDS1 and NDR1 by disease resistance genes define at least two R gene-mediated signaling pathways in Arabidopsis. Proc Natl Acad Sci USA 95:10306-10311
3. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
4. Anderson PA, Lawrence GJ, Morrish BC, Ayliffe MA, Finnegan EJ, Ellis JG (1997) Inactivation of the flax rust resistance gene M associated with loss of a repeated unit within the leucine-rich repeat coding region. Plant Cell 9:641-651
5. Baker B, Zambriski P, Staskawicz B, Dinesh-Kumar SP (1997) Signaling in plant-microbe interactions. Science 276:726-733
6. Bent A, Kunkel BN, Dahlbeck D, Brown KL, Schmidt R, Giraudat J, Leung J, Staskawicz BJ (1994) RPS2 of Arabidopsis thaliana: A leucine-rich repeat class of plant disease resistance genes. Science 265:1856-1860
7. Bold HC (1977) The plant kingdom. Prentice-Hall, Englewood Cliffs, NJ
8. Botella MA, Parker JE, Frost LN, Bittner-Eddy PD, Beynon JL, Daniels MJ, Holub EB, Jones JDG (1998) Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. Plant Cell 10: 1847-1860
9. Burge C, Karlin S (1997) Prediction of complete gene structures in human genomic DNA. J Mol Biol 268:78-94
10. Crane PR, Friis EM, Pedersen KR (1995) The origin and early diversification of angiosperms. Nature 374:27-33
11. Dixon MS, Jones DA, Keddie JS, Thomas CM, Harrison K, and Jones JDG (1996) The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell 84:451-459
12. Dixon MS, Hatzixanthis K, Jones DA, Harrison K, Jones JDG (1998) The tomato Cf-5 disease resistance gene and six homologs show pronounced allelic variation in leucine-rich repeat copy number. Plant Cell 10:1915-1925
13. Gale MD, Devos KM (1998) Comparative genetics in the grasses. Proc Natl Acad Sci USA 95:1971-1974
14. Galtier N, Gouy M, Galtier C (1996) SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. CABIOS 12:543-548
15. Grant MR, Godiard L, Straube E, Ashfield T, Lewald J, Sattler A, Innes RW, Dangl JL (1995a) Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance. Science 269:843-846
16. Hammond-Kosack KE, Jones JDG (1997) Plant disease resistance genes. Annu Rev Plant Physiol Plant Mol Biol 48:575-607
17. Hashimoto C, Hudson KL, Anderson KV (1988) The Toll gene of Drosophila, required for dorsal-ventral embryonic polarity, appears to encode a transmembrane protein. Cell 52:269-279
18. Jones DA, Thomas CM, Hammond-Kosack KE, Balint-Kurti PJ, and Jones JDG (1994) Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by tranposon tagging. Science 266:789-793
19. Kanazin V, Marek LF, Shoemarker (1996) Resistance gene analogs are conserved and clustered in soybean. Proc Natl Acad Sci USA 93: 11746-11750
20. Lagudah ES, Moullet O, Appels R (1997) Map-based cloning of a gene sequence encoding a nucleotide-binding domain and a leucine-rich region at the Cre3 nematode resistance locus of wheat. Genome 40:659-665
21. Lawrence GJ, Finnegan EJ, Ayliffe MA, Ellis JG (1995) The L6 gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N. Plant Cell 7:1195-1206
22. Leister D, Ballvora A, Salamini F, Gebhardt C (1996) A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants. Nature Genetics 14:421-429
23. Leister D, Kurth J, Laurie DA, Yano M, Sasaki T, Devos K, Graner A, Schulze-Lefert P (1998) Rapid reorganization of resistance gene homologues in cereal genomes. Proc Natl Acad Sci USA 95:370-375
24. Li P, Nijhawan D, Budihardjo I, Srinivasula SM, Ahmad M, Alnemri ES, Wang X (1997) Cytochrome c and dATP-dependent formation of Apaf-1/caspase-9 complex initiates an apoptotic protease cascade. Cell 91:479-489
25. Lupas A (1996) Coiled coils: New structures and new functions. Trends Biochem Sci 21:375-382
26. Lupas A (1997) Predicting coiled-coil regions in proteins. Curr Opin Struct Biol 7:388-393
27. Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Ganal MW, Spivey R, Wu T, Earle ED, Tanksley SD (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262:1432-1436
28. McDowell JM, Dhandaydham M, Long TA, Aarts MGM, Goff S, Holub EG, Dangl JL (1998) Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of arabidopsis. Plant Cell 10:1861-1874
29. Medzhitov R, Preston-Hurlburt P, Janeway CAJ (1997) A human homologue of the Drosophila Toll protein signals activation of adaptive immunity. Nature 388:394-397
30. Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20:317-332
31. Meyers BC, Shen KA, Rohani P, Gaut BS, Michelmore RW (1998) Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell 10:1833-1846
32. Milligan SB, Bodeau J, Yaghoobi J, Kaloshian I, Zabel P, Williamson VM (1998) The root knot nematode resistance gene Mi from tomato is a member of the leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes. Plant Cell 10:1307-1319
33. Mindrinos M, Katagiri F, Yu G, Ausubel FM (1994) The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats. Cell 78:1089-1099
34. Morel J, Dangl JL (1997) The hypersensitive response and the induction of cell death in plants. Cell Death Different 4:671-683
35. Ori N, Eshed Y, Paran I, Presting G, Aviv D, Tanksley S, Zamir D, Fluhr R (1997) The I2C1 family from the wilt disease resistance locus I2 belong to the nucleotide binding, leucine-rich repeat superfamily of plant resistance genes. Plant Cell 9:521-532
36. Parker JE, Coleman MJ, Szabo V, Frost LN, Schmidt R, Van der Biezen EA, Moores T, Dean C, Daniels M, Jones JDG (1997) the Arabidopsis downy mildew resistance gene RPP5 shares similarity to the Toll and interleukin-1 receptors with N and L6. Plant Cell 9:879-894
37. Rock FL, Hardiman G, Timans JC, Kastelein RA, Bazan JF (1998b) A family of human receptors structurally related to Drosophila Toll. Proc Natl Acad Sci USA 95:588-593
38. Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
39. Salmeron J, Oldroyd GED, Rommens CM, Scofield SR, Kim HS, Lavelle DT, Dahlbeck D, Staskawicz BJ (1996) Tomato Prf is a member of leucine-rich repeat class of plant disease resistance genes and lies embedded within the Pto kinase gene cluster. Cell 86:123-133
40. Saraste M, Sibbald PR, Wittinghofer A (1990) The P-loop: A common motif in ATP-and GTP-binding proteins. Trends Biochem Sci 15:430-434
41. Smith TF, Waterman MS (1981) Identification of common molecular subsequences. J Mol Biol 147:195-197
42. Song WY, Wang GL, Chen LL, Kim HS, Pi LY, Holsten T, Gardner J, Wang B, Zhai WX, Zhu LH, Fauquet C, Ronald P (1995) A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 270:1804-1806
43. Thomas CM, Jones DA, Parniske M, Harrison K, Balint-Kurti PJ, Hatzixanthis K, Jones JDG (1997) Characterization of the tomato Cf-4 gene for resistance to Cladosporium fulvum identifies sequences that determine recognitional specificity in Cf-4 and Cf-9. Plant Cell 9:2209-2224
44. Torii KU, McNellis TW, Deng XW (1998) Functional dissection of Arabidopsis COP1 reveals specific roles of its three structural modules in light control of seedling development. EMBO 17:5577-5587
45. Traut TW (1994) The functions and consensus motifs of nine types of peptide segments that form different types of nucleotide-binding sites. Eur J Biochem 222:9-19
46. Warren RF, Henk A, Mowery P, Holub E, Innes RW (1998) A mutation within the leucine-rich repeat domain of the arabidopsis disease resistance gene RPS5 partially suppresses multiple bacterial and downy mildew resistance genes. Plant Cell 10:1439-1452
47. Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Coor C, Baker B (1994) The product of the tobacco mosaic virus resistance gene N: Similarity to Toll and the interleukin-1 receptor. Cell 78:1101-1115
48. Yang RB, Mark MR, Gran A, Huang A, Xie MH, Zhang M, Goddard A, Wood WI, Gurney AL, Godowski PJ (1998) Toll-like receptor-2 mediates lipopolysaccharide-induced cellular signalling. Nature 395:284-288
49. Yoshimura S, Yamanouchi U, Katayose Y, Toki S, Wang ZX, Kono I, Kurata N, Yano M, Iwata N, Sasaki T (1998) Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc Natl Acad Sci USA 95:1663-1668
50. Yu YG, Buss GR, Saghai Maroof MA (1996) Isolation of a superfamily of candidate disease resistance genes in soybean based on a conserved nucleotide-binding site. Proc Natl Acad Sci USA 93:11751-11756