Genomic mining for Aspergillus natural products

Chemistry and Biology

Volumn 13, Issue 1, 2006, Pages 31-37

  Bok, Jin Woo ^a   Hoffmeister, Dirk ^b   Maggio Hall, Lori A ^a   Murillo, Renato ^c   Glasner, Jeremy D ^a   Keller, Nancy P ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF FREIBURG   (Germany)

^c UNIVERSIDAD DE COSTA RICA   (Costa Rica)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PRODUCT; INDOLE DERIVATIVE; TERREQUINONE A;

ARTICLE; ASPERGILLUS NIDULANS; CHEMICAL STRUCTURE; CHEMISTRY; DNA MICROARRAY; FUNGAL GENE; GENE EXPRESSION REGULATION; GENETICS; GENOMICS; ISOLATION AND PURIFICATION; METABOLISM; MULTIGENE FAMILY; MUTATION;

ASPERGILLUS NIDULANS; BIOLOGICAL PRODUCTS; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; GENOMICS; INDOLES; MOLECULAR STRUCTURE; MULTIGENE FAMILY; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

ASPERGILLUS; EMERICELLA NIDULANS;

EID: 30744456748     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chembiol.2005.10.008     Document Type: Article

References (32)

1. R. Cole, M. Schweikert, and B. Jarvis Handbook of Fungal Secondary Metabolites 2003 Academic Press San Diego, CA
2. T. Anke Bioactive metabolites from microorganisms M.E. Bushell U. Grafe Progress in Industrial Microbiology, Volume 27 1989 Elsevier Amsterdam 51 66
3. K. Lorenzen, and T. Anke Basidiomycetes as a source for new bioactive natural products Curr. Org. Chem. 2 1998 329 364
4. D. Bhatnagar, J. Yu, and K.C. Ehrlich Toxins of filamentous fungi Chem. Immunol. 81 2002 167 206
5. J.D. Walton Host-selective toxins: agents of compatibility Plant Cell 8 1996 1723 1733
6. Y.-Q. Zhang, H. Wilkinson, N.P. Keller, and D.I. Tsitsigiannis Secondary metabolite gene clusters Z. An Handbook of Industrial Microbiology 2004 Marcel Dekker New York 355 386
7. J.F. Martin New aspects of genes and enzymes for β-lactam antibiotic biosynthesis Appl. Microbiol. Biotechnol. 50 1998 1 15
8. J. Kennedy, K. Auclair, S.G. Kendrew, C. Park, J.C. Vederas, and C.R. Hutchinson Modulation of polyketide synthase activity by accessory proteins during lovastatin biosynthesis Science 284 1999 1368 1372
9. T. Correia, N. Grammel, I. Ortel, U. Keller, and P. Tudzynski Molecular cloning and analysis of the ergopeptine assembly system in the ergot fungus Claviceps purpurea Chem. Biol. 10 2003 1281 1292
10. L.E.H. Bingle, T.J. Simpson, and C.M. Lazarus Ketosynthase domain probes indentify two subclasses of fungal polyketide synthase genes Fung. Gen. Biol. 26 1999 209 223
11. R.J. Cox, F. Glod, D. Hurley, C.M. Lazarus, T.P. Nicholson, B.A.M. Rudd, T.J. Simpson, B. Wilkinson, and Y. Zhang Rapid cloning and expression of a fungal polyketide synthase gene involved in squalestatin biosynthesis Chem. Commun. 20 2004 2260 2261
12. P. van den Broek, A. Pittet, and H. Hajjaj Aflatoxin genes and the aflatoxigenic potential of Koji moulds Appl. Environ. Microbiol. 57 2001 192 199
13. J.W. Bok, and N.P. Keller LaeA, a regulator of secondary metabolism in Aspergillus spp Eukaryot. Cell 3 2004 527 535
14. P.C. Lee, T. Umeyama, and S. Horinouchi afsS is a target of AfsR, a transcriptional factor with ATPase activity that globally controls secondary metabolism in Streptomyces coelicolor A3(2) Mol. Microbiol. 43 2002 1413 1430
15. T. Umeyama, P.-C. Lee, K. Ueda, and S. Horinouchi An AfsK/AfsR system involved in the response of aerial mycelium formation to glucose in Streptomyces griseus Microbiol. 145 1999 2281 2292
16. D. Schwarzer, R. Finking, and M.A. Marahiel Nonribosomal peptides: from genes to products Nat. Prod. Rep. 20 2003 275 287
17. R. Finking, and M.A. Marahiel Biosynthesis of nonribosomal peptides Annu. Rev. Microbiol. 58 2004 453 488
18. S. Doekel, and M.A. Marahiel Biosynthesis of natural products on modular peptide synthetases Metab. Eng. 3 2001 64 77
19. J. Wang, C. Machado, and C.L. Schardl The determinant step in ergot alkaloid biosynthesis by a grass endophyte Fungal Genet. Biol. 41 2004 189 198
20. J. He, E.M.K. Wijeratne, B.P. Bashyal, J. Zhan, C.J. Seliga, M.X. Liu, E.E. Pierson, L.S. Pierson, H.D. VanEtten, and A.A.L. Gunatilaka Cytotoxic and other metabolites of Aspergillus inhabiting the rhizosphere of Sonoran desert plants J. Nat. Prod. 67 2004 1985 1991
21. K. Arai, and Y. Yamamoto Metabolic products of Aspergillus terreus. X. Biosynthesis of asterriquinones Chem. Pharm. Bull. 38 1990 2929 2932
22. J.J. May, N. Kessler, M.A. Marahiel, and M.T. Stubbs Crystal structure of DhbE, an archetype for aryl acid activating domains of modular nonribosomal peptide synthetases Proc. Natl. Acad. Sci. USA 99 2002 12120 12125
23. J.W. Trauger, R.M. Kohli, H.D. Mootz, M.A. Marahiel, and C.T. Walsh Peptide cyclization catalysed by the thioesterase domain of tyrocidine synthetase Nature 407 2000 215 218
24. S. Kroken, N.L. Glass, J.W. Taylor, O.C. Yoder, and B.G. Turgeon Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes Proc. Natl. Acad. Sci. USA 100 2003 15670 15675
25. H. Ikeda, J. Ishikawa, A. Hanamoto, M. Shinose, H. Kikuchi, T. Shiba, Y. Sakaki, M. Hattori, and S. Omura Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis Nat. Biotechnol. 21 2003 526 531
26. S.D. Bentley, K.F. Chater, A.M. Cerdeno-Tarraga, G.L. Challis, N.R. Thomson, K.D. James, D.E. Harris, M.A. Quail, H. Kieser, and D. Harper Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) Nature 417 2002 141 147
27. K. Shimizu, and N.P. Keller Genetic involvement of a cAMP-dependent protein kinase in a G protein signaling pathway regulating morphological and chemical transitions in Aspergillus nidulans Genetics 157 2001 591 600
28. T.H. Adams, and W.E. Timberlake Developmental repression of growth and gene expression in Aspergillus Proc. Natl. Acad. Sci. USA 87 1990 5405 5409
29. J. Sambrook, E.F. Fritsch, and T. Maniatis Molecular Cloning: A Laboratory Manual Second Edition 1989 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
30. C.D. Skory, P.K. Chang, J. Cary, and J.E. Linz Isolation and characterization of a gene from Aspergillus parasiticus associated with the conversion of versicolorin A to sterigmatocystin in aflatoxin biosynthesis Appl. Environ. Microbiol. 58 1992 3527 3537
31. C.M. Kendziorski, M.A. Newton, H. Lan, and M.N. Gould On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles Stat. Med. 22 2003 3899 3914
32. M.A. Newton, and C.M. Kendziorski Parametric empirical Bayes method for microarrays G. Parmigiani E.S. Garrett R. Irizarry S.L. Zeger The Analysis of Gene Expression Data: Methods and Software 2003 Springer New York 254 271