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Volumn 47, Issue 4, 2004, Pages 385-395

An evaluation of 18S rDNA approaches for the study of fungal diversity in grassland soils

Author keywords

[No Author keywords available]

Indexed keywords

COMMUNITY STRUCTURE; DNA; FUNGUS; GRASSLAND SOIL; SPECIES DIVERSITY;

EID: 3042808436     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-003-2018-3     Document Type: Article
Times cited : (77)

References (49)
  • 1
    • 0001541432 scopus 로고
    • Mycorrhizae and plant community development: Mechanisms and patterns
    • Carroll, GC, Wicklow, DT (Eds.) Marcel Dekker, New York
    • Allen, MF, Allen, EB (1992) Mycorrhizae and plant community development: mechanisms and patterns. In: Carroll, GC, Wicklow, DT (Eds.) The Fungal Community. Marcel Dekker, New York, pp 455-481
    • (1992) The Fungal Community , pp. 455-481
    • Allen, M.F.1    Allen, E.B.2
  • 2
    • 0037224886 scopus 로고    scopus 로고
    • Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil
    • Anderson, IC, Campbell, CD, Prosser, JI (2003) Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environ Microbiol 5: 36
    • (2003) Environ Microbiol , vol.5 , pp. 36
    • Anderson, I.C.1    Campbell, C.D.2    Prosser, J.I.3
  • 3
    • 0027871886 scopus 로고
    • The effects of agricultural management on the soil biota of some upland grasslands
    • Bardgett, RD, Frankland, JC, Whittaker, JB (1993) The effects of agricultural management on the soil biota of some upland grasslands. Agric Ecosyst Environ 45: 25-45
    • (1993) Agric Ecosyst Environ , vol.45 , pp. 25-45
    • Bardgett, R.D.1    Frankland, J.C.2    Whittaker, J.B.3
  • 5
    • 0033771173 scopus 로고    scopus 로고
    • PCR primers that amplify fungal rRNA genes from environmental samples
    • Borneman, J, Hartin, RJ (2000) PCR primers that amplify fungal rRNA genes from environmental samples. Appl Environ Microbiol 66: 4356-4360
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4356-4360
    • Borneman, J.1    Hartin, R.J.2
  • 6
    • 0026519029 scopus 로고
    • Rapid extraction of fungal DNA for PCR amplification
    • Cenis, JL (1992) Rapid extraction of fungal DNA for PCR amplification. Nucleic Acids Res 20: 2380
    • (1992) Nucleic Acids Res , vol.20 , pp. 2380
    • Cenis, J.L.1
  • 7
    • 0034942590 scopus 로고    scopus 로고
    • Molecular diversity of arbuscular mycorrhizal fungi colonising arable crops
    • Daniell, TJ, Husband, R, Fitter, AH, Young, JPW (2001) Molecular diversity of arbuscular mycorrhizal fungi colonising arable crops. FEMS Microbiol Ecol 36: 203-209
    • (2001) FEMS Microbiol Ecol , vol.36 , pp. 203-209
    • Daniell, T.J.1    Husband, R.2    Fitter, A.H.3    Young, J.P.W.4
  • 10
    • 0033963257 scopus 로고    scopus 로고
    • Management influences on soil microbial communities and their function in botanically diverse haymeadows of northern England and Wales
    • Donnison, LM, Griffith, GS, Hedger, J, Hobbs, PJ, Bardgett, RD (2000) Management influences on soil microbial communities and their function in botanically diverse haymeadows of northern England and Wales. Soil Biol Biochem 32: 253-263
    • (2000) Soil Biol Biochem , vol.32 , pp. 253-263
    • Donnison, L.M.1    Griffith, G.S.2    Hedger, J.3    Hobbs, P.J.4    Bardgett, R.D.5
  • 12
    • 77956815981 scopus 로고
    • Methods for studying fungi in soil and forest litter
    • Frankland, JC, Dighton, J, Boddy, L (1990) Methods for studying fungi in soil and forest litter. Methods Microbiol 22: 343-404
    • (1990) Methods Microbiol , vol.22 , pp. 343-404
    • Frankland, J.C.1    Dighton, J.2    Boddy, L.3
  • 13
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes - Application to the identification of mycorrhizae and rusts
    • Gardes, M, Bruns, TD (1993) ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113-118
    • (1993) Mol Ecol , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 14
    • 0003161392 scopus 로고
    • The analysis of communities of saprophytic microfungi with special reference to soil fungi
    • Winterhoff, W (Ed.) Kluwer Academic, Boston
    • Gams, W (1992) The analysis of communities of saprophytic microfungi with special reference to soil fungi. In: Winterhoff, W (Ed.) Fungi in Vegetation Science. Kluwer Academic, Boston
    • (1992) Fungi in Vegetation Science
    • Gams, W.1
  • 16
    • 0035712954 scopus 로고    scopus 로고
    • The magnitude of fungal diversity: The 1.5 million species estimate revisited
    • Hawksworth, DL (2001) The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycol Res 105: 1422-1432
    • (2001) Mycol Res , vol.105 , pp. 1422-1432
    • Hawksworth, D.L.1
  • 18
    • 0004735306 scopus 로고    scopus 로고
    • August University of Georgia, Athens
    • Holland, S (August 2001) aRarefactWin program. University of Georgia, Athens. http://www.uga.edu/~strata/software/AnRare Readme.html
    • (2001) ARarefactWin Program
    • Holland, S.1
  • 19
    • 0034843854 scopus 로고    scopus 로고
    • The molecular revolution in ectomycorrhizal ecology: Peeking into the black box
    • Horton, TR, Bruns, TD (2001) The molecular revolution in ectomycorrhizal ecology: peeking into the black box. Mol Ecol 10: 1855-1871
    • (2001) Mol Ecol , vol.10 , pp. 1855-1871
    • Horton, T.R.1    Bruns, T.D.2
  • 20
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 21
    • 0020459102 scopus 로고
    • Microfungi in ecosystems. Fungal occurrence and activity in litter and soil
    • Kjoller, A, Struwe, S (1982) Microfungi in ecosystems. Fungal occurrence and activity in litter and soil. Oikos 39: 389-422
    • (1982) Oikos , vol.39 , pp. 389-422
    • Kjoller, A.1    Struwe, S.2
  • 22
    • 0030754258 scopus 로고    scopus 로고
    • Detection and characterisation of fungal infections of Ammophila arenaria (Marram Grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18S rDNA
    • Kowalchuk, GA, Gerards, S, Woldendorp, JW (1997) Detection and characterisation of fungal infections of Ammophila arenaria (Marram Grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18S rDNA. Appl Environ Microbiol 63: 3858-3865
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3858-3865
    • Kowalchuk, G.A.1    Gerards, S.2    Woldendorp, J.W.3
  • 23
    • 0030695223 scopus 로고    scopus 로고
    • Sequence variation of the rDNA ITS regions within and between anastomosis groups in Rhizoctonia solani
    • Kuninaga, S, Natsuaki, T, Takeuchi, T, Yokosawa, R (1997) Sequence variation of the rDNA ITS regions within and between anastomosis groups in Rhizoctonia solani. Curr Genet 32: 237-243
    • (1997) Curr Genet , vol.32 , pp. 237-243
    • Kuninaga, S.1    Natsuaki, T.2    Takeuchi, T.3    Yokosawa, R.4
  • 24
    • 0032845186 scopus 로고    scopus 로고
    • Design of a primer for ribosomal DNA internal transcribed spacer with enhanced specificity for ascomycetes
    • Larena, I, Salazar, O, Gonzalez, V, Julian, MC, Rubio, V (1999) Design of a primer for ribosomal DNA internal transcribed spacer with enhanced specificity for ascomycetes. J Biotechnol 75: 187-194
    • (1999) J Biotechnol , vol.75 , pp. 187-194
    • Larena, I.1    Salazar, O.2    Gonzalez, V.3    Julian, M.C.4    Rubio, V.5
  • 26
    • 0032811694 scopus 로고    scopus 로고
    • 2 content on soil and rhizosphere bacterial communities beneath Lolium perenne and Trifolium repens under field conditions
    • 2 content on soil and rhizosphere bacterial communities beneath Lolium perenne and Trifolium repens under field conditions. Microb Ecol 38: 39-49
    • (1999) Microb Ecol , vol.38 , pp. 39-49
    • Marilley, L.1    Hartwig, U.A.2    Aragno, M.3
  • 27
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure and diversity in unimproved and improved grass pastures
    • McCaig, AE, Glover, AL, Prosser, JI (1999) Molecular analysis of bacterial community structure and diversity in unimproved and improved grass pastures. Appl Environ Microbiol 65: 1721-1730
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1721-1730
    • McCaig, A.E.1    Glover, A.L.2    Prosser, J.I.3
  • 28
    • 0029902203 scopus 로고    scopus 로고
    • A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature
    • Moyer, CL, Tiedje, JM, Dobbs, FC, Karl, DM (1996) A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl Environ Microbiol 62: 2501-2507
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2501-2507
    • Moyer, C.L.1    Tiedje, J.M.2    Dobbs, F.C.3    Karl, D.M.4
  • 29
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins, TD, Britschgl, TB, Krest, RL, Giovannoni, SJ (1995) Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol Oceanogr 40: 148-158
    • (1995) Limnol Oceanogr , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgl, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 31
    • 0034940124 scopus 로고    scopus 로고
    • Structure and diversity of Gram-negative sulfate-reducing bacteria on rice roots
    • Scheid, D, Stubner, S (2001) Structure and diversity of Gram-negative sulfate-reducing bacteria on rice roots. FEMS Microbiol Ecol 36: 175-183
    • (2001) FEMS Microbiol Ecol , vol.36 , pp. 175-183
    • Scheid, D.1    Stubner, S.2
  • 32
    • 0035711692 scopus 로고    scopus 로고
    • A new fungal phylum, Glomeromycota: Phylogeny and evolution
    • Schußler, D, Schwarzott, D, Walker, C (2001) A new fungal phylum, Glomeromycota: phylogeny and evolution. Mycol Res 105: 1413-1421
    • (2001) Mycol Res , vol.105 , pp. 1413-1421
    • Schußler, D.1    Schwarzott, D.2    Walker, C.3
  • 34
    • 0033014645 scopus 로고    scopus 로고
    • Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis
    • Smit, E, Leeflang, P, Glandorf, B, van Elsas, JD, Wernars, K (1999) Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis. Appl Environ Microbiol 65: 2614-2621
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2614-2621
    • Smit, E.1    Leeflang, P.2    Glandorf, B.3    Van Elsas, J.D.4    Wernars, K.5
  • 36
    • 0034914549 scopus 로고    scopus 로고
    • Species richness, abundance and phenology of fungal fruit bodies over 21 years in a Swiss forest plot
    • Straatsma, G, Ayer, F, Egli, S (2001) Species richness, abundance and phenology of fungal fruit bodies over 21 years in a Swiss forest plot. Mycol Res 105: 515-523
    • (2001) Mycol Res , vol.105 , pp. 515-523
    • Straatsma, G.1    Ayer, F.2    Egli, S.3
  • 37
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, MT, Giovannoni, SJ (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62: 625-630
    • (1996) Appl Environ Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 38
    • 0033652044 scopus 로고    scopus 로고
    • Bias caused by using different isolation media for assessing the genetic diversity of a natural microbial population
    • Tabacchioni, S, Chiarini, L, Bevivino, A, Cantale, C, Dalmastri, C (2000) Bias caused by using different isolation media for assessing the genetic diversity of a natural microbial population. Microb Ecol 40: 169-176
    • (2000) Microb Ecol , vol.40 , pp. 169-176
    • Tabacchioni, S.1    Chiarini, L.2    Bevivino, A.3    Cantale, C.4    Dalmastri, C.5
  • 39
    • 0027202733 scopus 로고
    • Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast
    • Tebbe, CC, Vahjen, W (1993) Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast. Appl Environ Microbiol 59: 2657-2665
    • (1993) Appl Environ Microbiol , vol.59 , pp. 2657-2665
    • Tebbe, C.C.1    Vahjen, W.2
  • 40
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, JD, Gibson, TJ, Plewniak, F, Jeanmougin, F, Higgins, DG (1997) The CLUSTAL X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 42
    • 0030881030 scopus 로고    scopus 로고
    • The influence of functional diversity and composition on ecosystem processes
    • Tilman, DA, Knops, J, Wedin, D (1997) The influence of functional diversity and composition on ecosystem processes. Science 277: 1300-1302
    • (1997) Science , vol.277 , pp. 1300-1302
    • Tilman, D.A.1    Knops, J.2    Wedin, D.3
  • 43
    • 0034672742 scopus 로고    scopus 로고
    • Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis
    • Van Elsas, JD, Duarte, GF, Keijzer-Wolters, A, Smit, E (2000) Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis. J Microbiol Methods 43: 133-151
    • (2000) J Microbiol Methods , vol.43 , pp. 133-151
    • Van Elsas, J.D.1    Duarte, G.F.2    Keijzer-Wolters, A.3    Smit, E.4
  • 44
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • von Wintzingerode, F, Gobel, UB, Stackebrandt, E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21: 213-229
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 213-229
    • Von Wintzingerode, F.1    Gobel, U.B.2    Stackebrandt, E.3
  • 45
    • 0000178873 scopus 로고
    • The soil plate method for isolation of fungi from soil
    • Warcup, JH (1950) The soil plate method for isolation of fungi from soil. Nature (Lond) 166: 117-118
    • (1950) Nature (Lond) , vol.166 , pp. 117-118
    • Warcup, J.H.1
  • 46
    • 0030437774 scopus 로고    scopus 로고
    • The quest for a contemporary ecological dimension to soil biology
    • Wardle, DA, Giller, KE (1997) The quest for a contemporary ecological dimension to soil biology. Soil Biol Biochem 28: 1549-1554
    • (1997) Soil Biol Biochem , vol.28 , pp. 1549-1554
    • Wardle, D.A.1    Giller, K.E.2
  • 48
    • 0000007546 scopus 로고
    • Jackknifing an index of diversity
    • Zahl, S (1977) Jackknifing an index of diversity. Ecology 58: 907-913
    • (1977) Ecology , vol.58 , pp. 907-913
    • Zahl, S.1
  • 49
    • 0030070838 scopus 로고    scopus 로고
    • DNA recovery from soils of diverse composition
    • Zhou, J, Bruns, MA, Tiedje, JM (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62: 2316-2322
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2316-2322
    • Zhou, J.1    Bruns, M.A.2    Tiedje, J.M.3


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