Bias caused by using different isolation media for assessing the genetic diversity of a natural microbial population

Microbial Ecology

Volumn 40, Issue 3, 2000, Pages 169-176

  Tabacchioni, S ^a   Chiarini, L ^a   Bevivino, A ^a   Cantale, C ^a   Dalmastri, C ^a  

^a ENEA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS OF MOLECULAR VARIANCE; CULTURE MEDIUM; DILUTION; GENETIC DISTANCE; GENETIC DIVERSITY; GENETIC VARIANCE; PLANT ROOT; RANDOM AMPLIFIED POLYMORPHIC DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RHIZOSPHERE; RIBOSOMAL RNA;

ASSESSMENT METHOD; GENETIC VARIATION; MICROORGANISM; SAMPLING BIAS;

EID: 0033652044     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002480000015     Document Type: Article

References (36)

1. Phylogenetic identification and in situ detection of individual microbial cells without cultivation
2. Characterization of a free-living maizerhizosphere population of Burkholderia cepacia: Effect of seed treatment on disease suppression and growth promotion of maize
3. A soil and rhizosphere microorganism isolation and enumeration medium that inhibits Bacillus mycoides
4. A medium selective for Pseudomonas cepacia
5. Genetic structure of Acetobacter diazotrophicus populations and identification of a new genetically distant group
6. Different portions of the maize root system host Burkholderia cepacia: Populations with different degrees of genetic polymorphism
7. Soil type and maize cultivar affect the genetic diversity of maize-root associated Burkholderia cepacia populations
8. Pseudomonas cepacia and Pseudomonas putida as winter wheat inoculants for biocontrol of Rhizoctonia solani
9. Biodiversity of a Burkholderia cepacia population isolated from maize rhizosphere at different plant growth stages
10. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
11. RAPD fingerprinting for useful identification of Azospirillum strains
12. PHYLIP - Phylogeny inference package
13. Identification of Azospirillum strains by restriction fragment length polymorphism of the 16S rDNA and of the histidine operon
14. Applications of random amplified polymorphic DNA (RAPD) in molecular ecology
15. A selective medium for enumeration and recovery of Pseudomonas cepacia biotypes from soil
16. Burkholderia cepacia, a plant growth promoting rhizobacterial associate of maize
17. Identification of Burkholderia cepacia isolates from patients with cystic fibrosis and use of a simple new selective medium
18. The identification of Pseudomonas cepacia and its occurrence in clinical material
19. Mode of suppression of sugar beet damping-off caused by Rhizoctonia solani by seed bacterization with Pseudomonas cepacia
20. RAPD variation among natural populations of outcrossing buffalograss [Buchloe dactyloides (Nutt.) Engelm.]
21. Linkage analysis of geographic and clinical clusters in Pseudomonas cepacia infections by multilocus enzyme electrophoresis and ribotyping
22. Molecular epidemiology of Pseudomonas cepacia determined by polymerase chain reaction ribotyping
23. Genomic complexity and plasticity of Burkholderia cepacia
24. Comparison of aerobic heterotrophic taxa isolated from four root domains of mature sugar beet (Beta vulgaris)
25. Development of a PCR probe test for identifying Pseudornonas aeruginosa and Pseudomonas (Burkholderia) cepacia
26. Genetic diversity of an italian Rhizobium melitoti population from different Medicago sativa varieties
27. TREEVIEW: An application to display phylogenetic trees on personal computers
28. Phenotypical divergences between populations of soil bacteria isolated on different media
29. Molecular characterization of rhizosphere and clinical isolates of Burkholderia cepacia
30. Rapid identification of bacteria of the Comamonadaceae with amplified ribosomal DNA-restriction analysis (ARDRA)
31. Fingerprinting genomes using PCR with arbitrary primers
32. Sex in soil
33. Genetic structure of a lotic population of Burkholderia (Pseudomonas) cepacia
34. Temporal variation in genetic diversity and structure of a lotic population of Burkholderia (Pseudornonas) cepacia
35. Selective medium for Pseudornonas cepacia containing 9-chloro-9-(4-diethylaminophenyl)-10-phenylacridan and Polymyxin B sulfate