-
3
-
-
0000476915
-
An N-glycosidase from Escherichia coli that releases free uracil from DNA containing deaminated cytosine residues
-
Lindahl T. An N-glycosidase from Escherichia coli that releases free uracil from DNA containing deaminated cytosine residues. Proc. Natl. Acad. Sci. USA. 71:1974;3649-3653
-
(1974)
Proc. Natl. Acad. Sci. USA
, vol.71
, pp. 3649-3653
-
-
Lindahl, T.1
-
4
-
-
0034576553
-
The α/β fold uracil-DNA glyosylases: A common origin with diverse fates
-
Aravind L., Koonin E.V. The. α/β fold uracil-DNA glyosylases: a common origin with diverse fates Genome Biol. 1:2000;1-8
-
(2000)
Genome Biol.
, vol.1
, pp. 1-8
-
-
Aravind, L.1
Koonin, E.V.2
-
5
-
-
0017392934
-
DNA N-glycosidase
-
Lindahl T., Ljungquist S., Siegert W., Nybert B., Sperens B. DNA N-glycosidase. J. Biol. Chem. 252:1977;3286-3294
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 3286-3294
-
-
Lindahl, T.1
Ljungquist, S.2
Siegert, W.3
Nybert, B.4
Sperens, B.5
-
6
-
-
0028934537
-
Crystal structure and mutational analysis of human uracil-DNA glycosylase: Structural basis for specificity and catalysis
-
Mol C.D., Arvai A.S., Slupphaug G., Kavli B., Alseth I., Krokan H.E., Tainer J.A. Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis. Cell. 80:1995;869-878
-
(1995)
Cell
, vol.80
, pp. 869-878
-
-
Mol, C.D.1
Arvai, A.S.2
Slupphaug, G.3
Kavli, B.4
Alseth, I.5
Krokan, H.E.6
Tainer, J.A.7
-
7
-
-
0028959237
-
The structural basis of specific base excision repair by uracil-DNA glycosylase
-
Savva R., McAuley-Hecht K., Brown T., Pearl L. The structural basis of specific base excision repair by uracil-DNA glycosylase. Nature. 373:1995;487-493
-
(1995)
Nature
, vol.373
, pp. 487-493
-
-
Savva, R.1
McAuley-Hecht, K.2
Brown, T.3
Pearl, L.4
-
8
-
-
0029904839
-
A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
-
Slupphaug G., Mol C.D., Kavli B., Arvai A.S., Krokan H.E., Tainer J.A. A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature (London). 384:1996;87-92
-
(1996)
Nature (London)
, vol.384
, pp. 87-92
-
-
Slupphaug, G.1
Mol, C.D.2
Kavli, B.3
Arvai, A.S.4
Krokan, H.E.5
Tainer, J.A.6
-
9
-
-
3643055084
-
X-ray analysis of a complex of E. coli uracil-DNA glycosylase (EcUDG) with its proteinaceous inhibitor. the structure elucidation of a prokaryotic UDG
-
Ravishankar R., Bidya Sagar M., Roy S., Purnapatre K., Handa P., Varshney U., Vijayan M. X-ray analysis of a complex of E. coli uracil-DNA glycosylase (EcUDG) with its proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG. Nucleic Acids Res. 26:1998;4880-4887
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4880-4887
-
-
Ravishankar, R.1
Bidya Sagar, M.2
Roy, S.3
Purnapatre, K.4
Handa, P.5
Varshney, U.6
Vijayan, M.7
-
10
-
-
0033605817
-
Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase
-
Putnam C.D., Shroyer M.J.N., Lundquist A.J., Mol C.D., Arvai A.S., Mosbaugh D.W. Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase. J. Mol. Biol. 287:1999;331-346
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 331-346
-
-
Putnam, C.D.1
Shroyer, M.J.N.2
Lundquist, A.J.3
Mol, C.D.4
Arvai, A.S.5
Mosbaugh, D.W.6
-
11
-
-
0032167424
-
Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA
-
Parikh S.S., Mol C.D., Slupphaug G., Bharati S., Krokan H.E., Tainer J.A. Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. EMBO J. 17:1998;5214-5226
-
(1998)
EMBO J.
, vol.17
, pp. 5214-5226
-
-
Parikh, S.S.1
Mol, C.D.2
Slupphaug, G.3
Bharati, S.4
Krokan, H.E.5
Tainer, J.A.6
-
12
-
-
0034625082
-
Uracil-DNA glycosylase-DNA substrate and product structures: Conformational strain promotes catalytic efficiency by coupled stereoelectronic effects
-
Parikh S.S., Walcher G., Jones G.D., Slupphaug G., Krokan H.E., Blackburn G.M., Tainer J.A. Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects. Proc. Natl. Acad. Sci. USA. 97:2000;5083-5088
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5083-5088
-
-
Parikh, S.S.1
Walcher, G.2
Jones, G.D.3
Slupphaug, G.4
Krokan, H.E.5
Blackburn, G.M.6
Tainer, J.A.7
-
13
-
-
0030861915
-
DNA glycosylases in the base excision repair of DNA
-
Krokan H.E., Standal R., Slupphaug G. DNA glycosylases in the base excision repair of DNA. Biochem. J. 325:1997;1-15
-
(1997)
Biochem. J.
, vol.325
, pp. 1-15
-
-
Krokan, H.E.1
Standal, R.2
Slupphaug, G.3
-
14
-
-
0033554424
-
Role of electrophilic and general base catalysis in the mechanism of Escherichia coli uracil-DNA glycosylase
-
Drohat A.C., Jagadeesh J., Ferguson E., Stivers J.T. Role of electrophilic and general base catalysis in the mechanism of Escherichia coli uracil-DNA glycosylase. Biochemistry. 38:1999;11866-11875
-
(1999)
Biochemistry
, vol.38
, pp. 11866-11875
-
-
Drohat, A.C.1
Jagadeesh, J.2
Ferguson, E.3
Stivers, J.T.4
-
15
-
-
0033554395
-
Heteronuclear NMR and crystallographic studies of wild-type and H187Q Escherichia coli uracil-DNA glycosylase: Electrophilic catalysis of uracil expulsion by a neutral histidine 187
-
Drohat A.C., Xiao G., Tordova M., Jagadeesh J., Pankiewics K.W., Watanabe K.A., Gilliland G.L., Stivers J.T. Heteronuclear NMR and crystallographic studies of wild-type and H187Q Escherichia coli uracil-DNA glycosylase: electrophilic catalysis of uracil expulsion by a neutral histidine 187. Biochemistry. 38:1999;11876-11886
-
(1999)
Biochemistry
, vol.38
, pp. 11876-11886
-
-
Drohat, A.C.1
Xiao, G.2
Tordova, M.3
Jagadeesh, J.4
Pankiewics, K.W.5
Watanabe, K.A.6
Gilliland, G.L.7
Stivers, J.T.8
-
16
-
-
0034734383
-
Structure and function in the uracil-DNA glycosylase superfamily
-
Pearl L.H. Structure and function in the uracil-DNA glycosylase superfamily. Mut. Res. 460:2000;165-181
-
(2000)
Mut. Res.
, vol.460
, pp. 165-181
-
-
Pearl, L.H.1
-
17
-
-
0034734380
-
Lessons learned from structural results on uracil-DNA glycosylase
-
Parikh S.S., Putnam C.D., Tainer J.A. Lessons learned from structural results on uracil-DNA glycosylase. Mut. Res. 460:2000;183-199
-
(2000)
Mut. Res.
, vol.460
, pp. 183-199
-
-
Parikh, S.S.1
Putnam, C.D.2
Tainer, J.A.3
-
18
-
-
0030035663
-
Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase
-
Kavli B., Slupphaugh G., Mol C.D., Arvai S.A., Petersen S.B., Tainer J.A., Krokan H.E. Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase. EMBO J. 15:1996;3442-3447
-
(1996)
EMBO J.
, vol.15
, pp. 3442-3447
-
-
Kavli, B.1
Slupphaugh, G.2
Mol, C.D.3
Arvai, S.A.4
Petersen, S.B.5
Tainer, J.A.6
Krokan, H.E.7
-
19
-
-
0035907352
-
The role of leucine 191 of Escherichia coli uracil-DNA glycosylase in forming a stable complex with a substrate mimic, Ugi, and in uracil excision from synthetic substrates
-
Handa P., Roy S., Varshney U. The role of leucine 191 of Escherichia coli uracil-DNA glycosylase in forming a stable complex with a substrate mimic, Ugi, and in uracil excision from synthetic substrates. J. Biol. Chem. 276:2001;17324-17331
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 17324-17331
-
-
Handa, P.1
Roy, S.2
Varshney, U.3
-
20
-
-
0037100702
-
Effects of mutations at tyrosine 66 and asparagine 123 in the active site pocket of Escherichia coli uracil-DNA glycosylase on uracil excision from synthetic DNA oligomers: Evidence for the occurrence of long-range interactions between the enzyme and substrate
-
Handa P., Acharya N., Varshney U. Effects of mutations at tyrosine 66 and asparagine 123 in the active site pocket of Escherichia coli uracil-DNA glycosylase on uracil excision from synthetic DNA oligomers: evidence for the occurrence of long-range interactions between the enzyme and substrate. Nucleic Acids Res. 30:2002;3086-3095
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3086-3095
-
-
Handa, P.1
Acharya, N.2
Varshney, U.3
-
21
-
-
0037754338
-
Contrasting effects of mutating active site residues, aspartic acid 64 and histidine 187 of Escherichia coli uracil-DNA glycosylase on uracil excision and interaction with an inhibitor protein
-
Handa P., Acharya N., Talawar R.K., Roy S., Varshney U. Contrasting effects of mutating active site residues, aspartic acid 64 and histidine 187 of Escherichia coli uracil-DNA glycosylase on uracil excision and interaction with an inhibitor protein. Ind. J. Biochem. Biophys. 39:2002;312-317
-
(2002)
Ind. J. Biochem. Biophys.
, vol.39
, pp. 312-317
-
-
Handa, P.1
Acharya, N.2
Talawar, R.K.3
Roy, S.4
Varshney, U.5
-
22
-
-
0348143493
-
Substitutions at tyrosine 66 of Escherichia coli uracil-DNA glycosylase lead to characterization of an efficient enzyme that is recalcitrant to product inhibition
-
Acharya N., Talawar R.K., Saikrishnan K., Vijayan M., Varshney U. Substitutions at tyrosine 66 of Escherichia coli uracil-DNA glycosylase lead to characterization of an efficient enzyme that is recalcitrant to product inhibition. Nucleic Acids Res. 31:2003;7216-7226
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 7216-7226
-
-
Acharya, N.1
Talawar, R.K.2
Saikrishnan, K.3
Vijayan, M.4
Varshney, U.5
-
23
-
-
0035909316
-
Uracil-DNA glycosylase acts by substrate autocatalysis
-
Dinner A.R., Blackburn G.M., Karplus M. Uracil-DNA glycosylase acts by substrate autocatalysis. Nature. 413:2001;752-755
-
(2001)
Nature
, vol.413
, pp. 752-755
-
-
Dinner, A.R.1
Blackburn, G.M.2
Karplus, M.3
-
24
-
-
0036314935
-
Biochemical properties of single stranded DNA binding protein from Mycobacterium smegmatis, a fast growing mycobacterium and its physical and functional interaction with uracil-DNA glycosylases
-
Acharya N., Varshney U. Biochemical properties of single stranded DNA binding protein from Mycobacterium smegmatis, a fast growing mycobacterium and its physical and functional interaction with uracil-DNA glycosylases. J. Mol. Biol. 318:2002;1251-1264
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 1251-1264
-
-
Acharya, N.1
Varshney, U.2
-
25
-
-
0032530427
-
Uracil-DNA glycosylase from Mycobacterium smegmatis and its distinct biochemical properties
-
Purnapatre K., Varshney U. Uracil-DNA glycosylase from Mycobacterium smegmatis and its distinct biochemical properties. Eur. J. Biochem. 256:1998;580-588
-
(1998)
Eur. J. Biochem.
, vol.256
, pp. 580-588
-
-
Purnapatre, K.1
Varshney, U.2
-
26
-
-
0345462030
-
Molecular Cloning: A Laboratory Manual
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
-
Sambrook J.E., Fritsch F., Maniatis T. Molecular Cloning: A Laboratory Manual. second ed. 1989;Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
(1989)
Second Ed.
-
-
Sambrook, J.E.1
Fritsch, F.2
Maniatis, T.3
-
27
-
-
0032127151
-
Use of coupled transcriptional system for consistent overexpression and purification of UDG-Ugi complex and Ugi from E. coli
-
Roy S., Purnapatre K., Handa P., Boyanapalli M., Varshney U. Use of coupled transcriptional system for consistent overexpression and purification of UDG-Ugi complex and Ugi from E. coli. Protein Expr. Purif. 13:1998;155-162
-
(1998)
Protein Expr. Purif.
, vol.13
, pp. 155-162
-
-
Roy, S.1
Purnapatre, K.2
Handa, P.3
Boyanapalli, M.4
Varshney, U.5
-
28
-
-
0030806246
-
Contrasting effects of single stranded DNA binding protein on the activity of uracil-DNA glycosylase from Escherichia coli towards different DNA substrates
-
Kumar N.V., Varshney U. Contrasting effects of single stranded DNA binding protein on the activity of uracil-DNA glycosylase from Escherichia coli towards different DNA substrates. Nucleic Acids Res. 25:1997;2336-2343
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2336-2343
-
-
Kumar, N.V.1
Varshney, U.2
-
29
-
-
0019306430
-
Uracil-DNA-glycosylase. Purification and properties of this enzyme isolated from blast cells of acute myelocytic leukemia patients
-
Caradonna S.J., Cheng Y.C. Uracil-DNA-glycosylase. Purification and properties of this enzyme isolated from blast cells of acute myelocytic leukemia patients. J. Biol. Chem. 255:1980;2293-2300
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 2293-2300
-
-
Caradonna, S.J.1
Cheng, Y.C.2
-
30
-
-
0019878052
-
Uracil DNA-glycosylase from HeLa cells: General properties, substrate specificity and effect of uracil analogs
-
Krokan H.E., Wittwer C.U. Uracil DNA-glycosylase from HeLa cells: general properties, substrate specificity and effect of uracil analogs. Nucleic Acids Res. 9:1981;2599-2613
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 2599-2613
-
-
Krokan, H.E.1
Wittwer, C.U.2
-
31
-
-
0020478598
-
Properties of purified uracil-DNA glycosylase from calf thymus
-
Borle M.T., Campagnari F., Creissen D.M. Properties of purified uracil-DNA glycosylase from calf thymus. J. Biol. Chem. 257:1982;1208-1214
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 1208-1214
-
-
Borle, M.T.1
Campagnari, F.2
Creissen, D.M.3
-
32
-
-
0023782193
-
Purification and properties of mitochondrial uracil-DNA glycosylase from rat liver
-
Domena J.D., Timmer R.T., Dicharry S.A., Mosbaugh D.W. Purification and properties of mitochondrial uracil-DNA glycosylase from rat liver. Biochemistry. 27:1988;6742-6751
-
(1988)
Biochemistry
, vol.27
, pp. 6742-6751
-
-
Domena, J.D.1
Timmer, R.T.2
Dicharry, S.A.3
Mosbaugh, D.W.4
-
33
-
-
0025334495
-
A mollicute (mycoplasma) DNA repair enzyme: Purification and characterization of uracil-DNA glycosylase
-
Williams M.V., Pollack J.D. A mollicute (mycoplasma) DNA repair enzyme: purification and characterization of uracil-DNA glycosylase. J. Bacteriol. 172:1990;2979-2985
-
(1990)
J. Bacteriol.
, vol.172
, pp. 2979-2985
-
-
Williams, M.V.1
Pollack, J.D.2
-
34
-
-
0027261129
-
Herpes simplex virus type 1 uracil-DNA glycosylase: Isolation and selective inhibition by novel uracil derivatives
-
Focher F., Verri A., Spadari S., Manservigi R., Gambino J., Wright G.E. Herpes simplex virus type 1 uracil-DNA glycosylase: isolation and selective inhibition by novel uracil derivatives. Biochem. J. 292:1993;883-889
-
(1993)
Biochem. J.
, vol.292
, pp. 883-889
-
-
Focher, F.1
Verri, A.2
Spadari, S.3
Manservigi, R.4
Gambino, J.5
Wright, G.E.6
-
35
-
-
0037163122
-
Mutational analysis of the uracil-DNA glycosylase inhibitor protein and its interaction with Escherichia coli uracil-DNA glycosylase
-
Acharya N., Roy S., Varshney U. Mutational analysis of the uracil-DNA glycosylase inhibitor protein and its interaction with Escherichia coli uracil-DNA glycosylase. J. Mol. Biol. 321:2002;579-590
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 579-590
-
-
Acharya, N.1
Roy, S.2
Varshney, U.3
-
36
-
-
0033551258
-
Mutation of an active site residue in Escherichia coli uracil-DNA glycosylase: Effect on DNA binding, uracil inhibition and catalysis
-
Shroyer M.J., Bennett S.E., Putnam C.D., Tainer J.A., Mosbaugh D.W. Mutation of an active site residue in Escherichia coli uracil-DNA glycosylase: effect on DNA binding, uracil inhibition and catalysis. Biochemistry. 38:1999;4834-4845
-
(1999)
Biochemistry
, vol.38
, pp. 4834-4845
-
-
Shroyer, M.J.1
Bennett, S.E.2
Putnam, C.D.3
Tainer, J.A.4
Mosbaugh, D.W.5
-
37
-
-
0033587492
-
Specificity and catalysis of uracil-DNA glycosylase, a molecular dynamics study of reactant and product complexes with DNA
-
Luo N., Osman R. Specificity and catalysis of uracil-DNA glycosylase, a molecular dynamics study of reactant and product complexes with DNA. Biochemistry. 38:1999;9209-9220
-
(1999)
Biochemistry
, vol.38
, pp. 9209-9220
-
-
Luo, N.1
Osman, R.2
|