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Volumn 62, Issue 1, 2006, Pages 99-110

Modeling evolution of hydrogen bonding and stabilization of transition states in the process of cocaine hydrolysis catalysed by human butyrylcholinesterase

Author keywords

( ) cocaine; BChe cocaine complex; Hydrogen bonding; Molecular dynamics simulation; QM MM calculation

Indexed keywords

ACETYLCHOLINE; CARBONYL DERIVATIVE; CARBOXYL GROUP; CHOLINESTERASE; COCAINE; OXYGEN;

EID: 30344445104     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.20713     Document Type: Article
Times cited : (53)

References (51)
  • 1
    • 0023885216 scopus 로고
    • Cocaine and other stimulants - Actions, abuse, and treatment
    • (a) Gawin FH, Ellinwood EH Jr. Cocaine and other stimulants-actions, abuse, and treatment. N Eng J Med 1988;318:1173-1182.
    • (1988) N Eng J Med , vol.318 , pp. 1173-1182
    • Gawin, F.H.1    Ellinwood Jr., E.H.2
  • 2
    • 0031065219 scopus 로고    scopus 로고
    • Immunotherapy for cocaine addiction
    • (b) Landry DW. Immunotherapy for cocaine addiction. Sci Am 1997;276:42-45.
    • (1997) Sci Am , vol.276 , pp. 42-45
    • Landry, D.W.1
  • 3
    • 0001384546 scopus 로고    scopus 로고
    • Chemistry, design, and structure-activity relationship of cocaine antagonists
    • Singh S. Chemistry, design, and structure-activity relationship of cocaine antagonists. Chem Rev 2000;100:925-1024.
    • (2000) Chem Rev , vol.100 , pp. 925-1024
    • Singh, S.1
  • 4
    • 0030781787 scopus 로고    scopus 로고
    • Peripheral cocaine-blocking agents: New medications for cocaine dependence - An introduction to immunological and enzymatic approaches to treating cocaine dependence reported by Fox, Gorelick, and Cohen in the immediately succeeding articles (see pages 153-174)
    • Sparenborg S, Vocci F, Zukin S. Peripheral cocaine-blocking agents: new medications for cocaine dependence-an introduction to immunological and enzymatic approaches to treating cocaine dependence reported by Fox, Gorelick, and Cohen in the immediately succeeding articles (see pages 153-174). Drug Alcohol Depend 1997;48:149-151.
    • (1997) Drug Alcohol Depend , vol.48 , pp. 149-151
    • Sparenborg, S.1    Vocci, F.2    Zukin, S.3
  • 5
    • 0030735986 scopus 로고    scopus 로고
    • Enhancing cocaine metabolism with butyrylcholinesterase as a treatment strategy
    • Gorelick DA. Enhancing cocaine metabolism with butyrylcholinesterase as a treatment strategy. Drug Alcohol Depen 1997;48:159-165.
    • (1997) Drug Alcohol Depen , vol.48 , pp. 159-165
    • Gorelick, D.A.1
  • 7
    • 0030043207 scopus 로고    scopus 로고
    • Participation of cytochromes P4502B and P4503A in cocaine toxicity in rat hepatocytes
    • Poet TS, McQueen CA, Halpert JR. Participation of cytochromes P4502B and P4503A in cocaine toxicity in rat hepatocytes. Drug Metab Dispos 1996;24:74-80.
    • (1996) Drug Metab Dispos , vol.24 , pp. 74-80
    • Poet, T.S.1    McQueen, C.A.2    Halpert, J.R.3
  • 8
    • 0345148795 scopus 로고    scopus 로고
    • Cocaine and alcohol interactions in the rat: Contribution of cocaine metabolites to the pharmacological effects
    • Pan W-J, Hedaya MA. Cocaine and alcohol interactions in the rat: contribution of cocaine metabolites to the pharmacological effects. J Pharm Sci 1999;88:468-476.
    • (1999) J Pharm Sci , vol.88 , pp. 468-476
    • Pan, W.-J.1    Hedaya, M.A.2
  • 9
    • 0029924913 scopus 로고    scopus 로고
    • Characterization of the properties of cocaine in blood: Blood clearance, blood to plasma ratio, and plasma protein binding
    • Sukbuntherng J, Martin DK, Pak Y, Mayersohn M. Characterization of the properties of cocaine in blood: blood clearance, blood to plasma ratio, and plasma protein binding. J Pharm Sci 1996;85: 567-571.
    • (1996) J Pharm Sci , vol.85 , pp. 567-571
    • Sukbuntherng, J.1    Martin, D.K.2    Pak, Y.3    Mayersohn, M.4
  • 10
    • 0031839079 scopus 로고    scopus 로고
    • The influence of plasma butyrylcholinesterase concentration on the in vitro hydrolysis of cocaine in human plasma
    • Browne SP, Slaughter EA, Couch RA, Rudnic EM, McLean AM. The influence of plasma butyrylcholinesterase concentration on the in vitro hydrolysis of cocaine in human plasma. Biopharmaceutics Drug Disposition 1998;19:309-314.
    • (1998) Biopharmaceutics Drug Disposition , vol.19 , pp. 309-314
    • Browne, S.P.1    Slaughter, E.A.2    Couch, R.A.3    Rudnic, E.M.4    McLean, A.M.5
  • 11
    • 0029686495 scopus 로고    scopus 로고
    • Plasma butyrylcholinesterase activity and cocaine half-life differ significantly in rhesus and squirrel monkeys
    • (a) Carmona GN, Baum I, Schindler CW, Goldberg SR, Jufer R. Plasma butyrylcholinesterase activity and cocaine half-life differ significantly in rhesus and squirrel monkeys. Life Sci 1996;59:939-943.
    • (1996) Life Sci , vol.59 , pp. 939-943
    • Carmona, G.N.1    Baum, I.2    Schindler, C.W.3    Goldberg, S.R.4    Jufer, R.5
  • 15
    • 0026034719 scopus 로고
    • Activities of the enantiomers of cocaine and some related compounds as substrates and inhibitors of plasma butyrylcholinesterase
    • Gateley SJ. Activities of the enantiomers of cocaine and some related compounds as substrates and inhibitors of plasma butyrylcholinesterase. Biochem Pharmacol 1991;41:1249-1254.
    • (1991) Biochem Pharmacol , vol.41 , pp. 1249-1254
    • Gateley, S.J.1
  • 16
    • 0025019509 scopus 로고
    • Rapid stereoselective hydrolysis of (+)-cocaine in baboon plasma prevents its uptake in the brain - Implications for behavioral-studies
    • Gatley SJ, MacGregor RR, Fowler JS, Wolf AP, Dewey SL, Schlyer DJ. Rapid stereoselective hydrolysis of (+)-cocaine in baboon plasma prevents its uptake in the brain-implications for behavioral-studies. J Neurochem 1990;54:720-723.
    • (1990) J Neurochem , vol.54 , pp. 720-723
    • Gatley, S.J.1    MacGregor, R.R.2    Fowler, J.S.3    Wolf, A.P.4    Dewey, S.L.5    Schlyer, D.J.6
  • 17
    • 0031043533 scopus 로고    scopus 로고
    • Role of aspartate 70 and tryptophan 82 in binding of succinyldithiocholine to human butyrylcholinesterase
    • (a) Masson P, Legrand P, Bartels CF, Froment M-T, Schopfer LM, Lockridge O. Role of aspartate 70 and tryptophan 82 in binding of succinyldithiocholine to human butyrylcholinesterase. Biochemistry 1997;36:2266-2277.
    • (1997) Biochemistry , vol.36 , pp. 2266-2277
    • Masson, P.1    Legrand, P.2    Bartels, C.F.3    Froment, M.-T.4    Schopfer, L.M.5    Lockridge, O.6
  • 18
    • 0032774638 scopus 로고    scopus 로고
    • Interaction between the peripheral site residues of human butyrylcholinesterase, D70 and Y332, in binding and hydrolysis of substrates
    • (b) Masson P, Xie W, Froment MT, Levitsky V, Fortier PL, Albaret C, Lockridge O. Interaction between the peripheral site residues of human butyrylcholinesterase, D70 and Y332, in binding and hydrolysis of substrates. Biochim Biophys Acta 1999;1433:281-293.
    • (1999) Biochim Biophys Acta , vol.1433 , pp. 281-293
    • Masson, P.1    Xie, W.2    Froment, M.T.3    Levitsky, V.4    Fortier, P.L.5    Albaret, C.6    Lockridge, O.7
  • 19
    • 0032944436 scopus 로고    scopus 로고
    • An improved cocaine hydrolase: The A328Y mutant of human butyrylcholinesterase is 4-fold more efficient
    • (c) Xie W, Altamirano CV, Bartels CF, Speirs RJ, Cashman JR, Lockridge O. An improved cocaine hydrolase: the A328Y mutant of human butyrylcholinesterase is 4-fold more efficient. Mol Pharmacol 1999;55:83-91.
    • (1999) Mol Pharmacol , vol.55 , pp. 83-91
    • Xie, W.1    Altamirano, C.V.2    Bartels, C.F.3    Speirs, R.J.4    Cashman, J.R.5    Lockridge, O.6
  • 20
    • 0036070598 scopus 로고    scopus 로고
    • Wild-type and A328W mutant human butyrylcholinesterase tetramers expressed in Chinese hamster ovary cells have a 16-hour half-life in the circulation and protect mice from cocaine toxicity
    • (d) Duysen EG, Bartels CF, Lockridge O. Wild-type and A328W mutant human butyrylcholinesterase tetramers expressed in Chinese hamster ovary cells have a 16-hour half-life in the circulation and protect mice from cocaine toxicity. J Pharmacol Exp Ther 2002;302:751-758.
    • (2002) J Pharmacol Exp Ther , vol.302 , pp. 751-758
    • Duysen, E.G.1    Bartels, C.F.2    Lockridge, O.3
  • 21
    • 0036164151 scopus 로고    scopus 로고
    • Engineering of a monomeric and low-glycosylated form of human butyrylcholinesterase - Expression, purification, characterization and crystallization
    • (e) Nachon F, Nicolet Y, Viguie N, Masson P, Fontecilla-Camps JC, Lockridge O. Engineering of a monomeric and low-glycosylated form of human butyrylcholinesterase-expression, purification, characterization and crystallization. Eur J Biochem 2002;269:630-637.
    • (2002) Eur J Biochem , vol.269 , pp. 630-637
    • Nachon, F.1    Nicolet, Y.2    Viguie, N.3    Masson, P.4    Fontecilla-Camps, J.C.5    Lockridge, O.6
  • 22
    • 0035280395 scopus 로고    scopus 로고
    • Theoretical studies of competing reaction pathways and energy barriers for alkaline ester hydrolysis of cocaine
    • (f) Zhan CG, Landry DW. Theoretical studies of competing reaction pathways and energy barriers for alkaline ester hydrolysis of cocaine. J Phys Chem A 2001;105:1296-1301.
    • (2001) J Phys Chem A , vol.105 , pp. 1296-1301
    • Zhan, C.G.1    Landry, D.W.2
  • 23
    • 0030668820 scopus 로고    scopus 로고
    • Stereoselective inhibition of human butyrylcholinesterase by phosphonothiolate analogs of (+)- and (-)-cocaine
    • Berkman CE., Underiner GE, Cashman JR. Stereoselective inhibition of human butyrylcholinesterase by phosphonothiolate analogs of (+)- and (-)-cocaine. Biochem Pharmcol 1997;54:1261-1266.
    • (1997) Biochem Pharmcol , vol.54 , pp. 1261-1266
    • Berkman, C.E.1    Underiner, G.E.2    Cashman, J.R.3
  • 24
    • 0035937713 scopus 로고    scopus 로고
    • Predicted Michaelis-Menten complexes of cocaine-butyrylcholinesterase - Engineering effective butyrylcholinesterase mutants for cocaine detoxication
    • (a) Sun H, El Yazal J, Lockridge O, Schopfer LM, Brimijoin S, Pang YP. Predicted Michaelis-Menten complexes of cocaine-butyrylcholinesterase- engineering effective butyrylcholinesterase mutants for cocaine detoxication. J Biol Chem 2001;276:9330-9336.
    • (2001) J Biol Chem , vol.276 , pp. 9330-9336
    • Sun, H.1    El Yazal, J.2    Lockridge, O.3    Schopfer, L.M.4    Brimijoin, S.5    Pang, Y.P.6
  • 25
    • 0036073873 scopus 로고    scopus 로고
    • Cocaine metabolism accelerated by a re-engineered human butyrylcholinesterase
    • (b) Sun H, Shen ML, Pang YP, Lockridge O, Brimijoin S. Cocaine metabolism accelerated by a re-engineered human butyrylcholinesterase. J Pharmacol Exp Ther 2002;302:710-716.
    • (2002) J Pharmacol Exp Ther , vol.302 , pp. 710-716
    • Sun, H.1    Shen, M.L.2    Pang, Y.P.3    Lockridge, O.4    Brimijoin, S.5
  • 26
    • 0036077314 scopus 로고    scopus 로고
    • Re-engineering butyrylcholinesterase as a cocaine hydrolase
    • (c) Sun H, Pang YP, Lockridge O, Brimijoin S. Re-engineering butyrylcholinesterase as a cocaine hydrolase. Mol Pharmacol 2002;62:220-224.
    • (2002) Mol Pharmacol , vol.62 , pp. 220-224
    • Sun, H.1    Pang, Y.P.2    Lockridge, O.3    Brimijoin, S.4
  • 27
    • 0242669341 scopus 로고    scopus 로고
    • Fundamental reaction mechanism for cocaine hydrolysis in human butyrylcholinesterase
    • Zhan CG, Zheng F, Landry DW. Fundamental reaction mechanism for cocaine hydrolysis in human butyrylcholinesterase. J Am Chem Soc 2003;125:2462-2474.
    • (2003) J Am Chem Soc , vol.125 , pp. 2462-2474
    • Zhan, C.G.1    Zheng, F.2    Landry, D.W.3
  • 28
    • 15944420158 scopus 로고    scopus 로고
    • Molecular dynamics simulation of cocaine binding with human butyrylcholinesterase and its mutants
    • Hamza A, Cho H, Tai H-H, Zhan CG. Molecular dynamics simulation of cocaine binding with human butyrylcholinesterase and its mutants. J Phys Chem B 2005;109:4776-4782.
    • (2005) J Phys Chem B , vol.109 , pp. 4776-4782
    • Hamza, A.1    Cho, H.2    Tai, H.-H.3    Zhan, C.G.4
  • 29
    • 0037019547 scopus 로고    scopus 로고
    • Role of the catalytic triad and oxyanion hole in acetylcholinesterase catalysis: An ab initio QM/MM study
    • Zhang Y, Kua J, McCammon JA. Role of the catalytic triad and oxyanion hole in acetylcholinesterase catalysis: an ab initio QM/MM study. J Am Chem Soc 2002;124:10572-10577.
    • (2002) J Am Chem Soc , vol.124 , pp. 10572-10577
    • Zhang, Y.1    Kua, J.2    McCammon, J.A.3
  • 31
    • 0142039868 scopus 로고    scopus 로고
    • Crystal structure of human butyrylcholinesterase and of its complexes with substrate and products
    • Nicolet Y, Lockridge O, Masson P, Fontecilla-Camps JC, Nachon F. Crystal structure of human butyrylcholinesterase and of its complexes with substrate and products. J Biol Chem 2003;278: 41141-41147.
    • (2003) J Biol Chem , vol.278 , pp. 41141-41147
    • Nicolet, Y.1    Lockridge, O.2    Masson, P.3    Fontecilla-Camps, J.C.4    Nachon, F.5
  • 33
    • 30344451328 scopus 로고    scopus 로고
    • (b) http://www.rcsb.org/pdb/.
  • 34
    • 0025317502 scopus 로고
    • Definition of general topological equivalence in protein structures - A procedure involving comparison of properties and relationships through simulated annealing and dynamic-programming
    • Sali A, Blundell TL. Definition of general topological equivalence in protein structures-a procedure involving comparison of properties and relationships through simulated annealing and dynamic-programming. J Mol Biol 1990;212:403-428.
    • (1990) J Mol Biol , vol.212 , pp. 403-428
    • Sali, A.1    Blundell, T.L.2
  • 35
    • 0027136282 scopus 로고
    • Comparative protein modeling by satisfaction of spatial restraints
    • Sali A, Blundell TL. Comparative protein modeling by satisfaction of spatial restraints. J Mol Biol 1993;234:779-815.
    • (1993) J Mol Biol , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 36
  • 37
    • 0042994001 scopus 로고    scopus 로고
    • Determination of two structural forms of catalytic bridging ligand in zinc-phosphotriesterase by molecular dynamics simulation and quantum chemical calculation
    • (a) Zhan CG, Norberto de Souza O, Rittenhouse R, Ornstein RL. Determination of two structural forms of catalytic bridging ligand in zinc-phosphotriesterase by molecular dynamics simulation and quantum chemical calculation. J Am Chem Soc 1999;121:7279-7282.
    • (1999) J Am Chem Soc , vol.121 , pp. 7279-7282
    • Zhan, C.G.1    Norberto De Souza, O.2    Rittenhouse, R.3    Ornstein, R.L.4
  • 38
    • 0035819590 scopus 로고    scopus 로고
    • Mobility of the active site bound paraoxon and sarin in zinc-phosphotriesterase by molecular dynamics simulation and quantum chemical calculation
    • (b) Koca J, Zhan CG, Rittenhouse R, Ornstein RL. Mobility of the active site bound paraoxon and sarin in zinc-phosphotriesterase by molecular dynamics simulation and quantum chemical calculation. J Am Chem Soc 2001;123:817-826.
    • (2001) J Am Chem Soc , vol.123 , pp. 817-826
    • Koca, J.1    Zhan, C.G.2    Rittenhouse, R.3    Ornstein, R.L.4
  • 39
    • 0037328259 scopus 로고    scopus 로고
    • Coordination number of zinc ions in the phosphotriesterase active site by molecular dynamics and quantum mechanics
    • (c) Koca J, Zhan CG, Rittenhouse RC, Ornstein RL. Coordination number of zinc ions in the phosphotriesterase active site by molecular dynamics and quantum mechanics. J Comput Chem 2003;24:368-378.
    • (2003) J Comput Chem , vol.24 , pp. 368-378
    • Koca, J.1    Zhan, C.G.2    Rittenhouse, R.C.3    Ornstein, R.L.4
  • 41
    • 33646940952 scopus 로고
    • Numerical-integration of cartesian equations of motion of a system with constraints - Molecular-dynamics of n-alkanes
    • Ryckaert JP, Ciccotti G, Berendsen HJC. Numerical-integration of cartesian equations of motion of a system with constraints-molecular-dynamics of n-alkanes. J Comp Phys 1977;23:327-341.
    • (1977) J Comp Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 42
    • 33846823909 scopus 로고
    • Particle mesh Ewald: An N · log(N) method for Ewald sums in large systems
    • Darden TA, Lee H, Pedersen LG. Particle mesh Ewald: an N · log(N) method for Ewald sums in large systems. J Chem Phys 1993;98:10089-10092.
    • (1993) J Chem Phys , vol.98 , pp. 10089-10092
    • Darden, T.A.1    Lee, H.2    Pedersen, L.G.3
  • 43
    • 0033515394 scopus 로고    scopus 로고
    • A new ONIOM implementation in Gaussian98. Part I. The calculation of energies, gradients, vibrational frequencies and electric field derivatives
    • Dapprich S, Komaromi I, Byun KS, Morokuma K, Frisch MJ. A new ONIOM implementation in Gaussian98. Part I. The calculation of energies, gradients, vibrational frequencies and electric field derivatives. J Mol Struct (Theochem) 1999;461:1-21.
    • (1999) J Mol Struct (Theochem) , vol.461 , pp. 1-21
    • Dapprich, S.1    Komaromi, I.2    Byun, K.S.3    Morokuma, K.4    Frisch, M.J.5
  • 45
    • 0034702677 scopus 로고    scopus 로고
    • 1) state photoisomerization path of a retinal protonated Schiff base
    • 1) state photoisomerization path of a retinal protonated Schiff base J Chem Phys 2000;113:2969-2975.
    • (2000) J Chem Phys , vol.113 , pp. 2969-2975
    • Vreven, T.1    Morokuma, K.2
  • 46
    • 0037473497 scopus 로고    scopus 로고
    • Efficient and reliable geometry optimization for QM/MM methods
    • Frisch M, Vreven T, Schlegel HB, Morokuma K. Efficient and reliable geometry optimization for QM/MM methods. J Comput Chem 2003;24:760-769.
    • (2003) J Comput Chem , vol.24 , pp. 760-769
    • Frisch, M.1    Vreven, T.2    Schlegel, H.B.3    Morokuma, K.4
  • 47
    • 30344445039 scopus 로고    scopus 로고
    • note
    • By using the geometries optimized at the HF/3-21G:Amber level with all of the transition bonds fixed, the total energies of the high-layer obtained from the single-point energy calculations at the B3LYP/6-31+G*: Amber level roughly suggest that the energy barriers associated with TS1, TS2, TS3, and TS4 are 2.8, 14.2, 6.6, and 20.4 kcal/mol, respectively. We emphasize that the energy barriers estimated without fully optimizing the geometries of the transition states are not reliable.
  • 49
    • 30344448810 scopus 로고    scopus 로고
    • note
    • 0 = 1.49 Å, because it is the shortest H...O distance found in all of our MD simulations and geometry optimizations. The ∈ value was determined by using the condition that HBE(r) = -5.0 kcal/mol, when r = 1.90 Å.
  • 50
    • 0034906622 scopus 로고    scopus 로고
    • Analysis of a 10-ns molecular dynamics simulation of mouse acetylcholinesterase
    • Tai K, Shen T, Börjesson U, Philippopoulos M, McCammon JA. Analysis of a 10-ns molecular dynamics simulation of mouse acetylcholinesterase. Biophys J 2001;81:715-724.
    • (2001) Biophys J , vol.81 , pp. 715-724
    • Tai, K.1    Shen, T.2    Börjesson, U.3    Philippopoulos, M.4    McCammon, J.A.5
  • 51
    • 0345276588 scopus 로고    scopus 로고
    • Studying the roles of W86, E202, and Y337 in binding of acetylcholine to acetylcholinesterase using a combined molecular dynamics and multiple docking approach
    • Kua J, Zhang Y, Eslami AC, Butler JR, McCammon JA. Studying the roles of W86, E202, and Y337 in binding of acetylcholine to acetylcholinesterase using a combined molecular dynamics and multiple docking approach. Protein Sci 2003;12:2675-2684.
    • (2003) Protein Sci , vol.12 , pp. 2675-2684
    • Kua, J.1    Zhang, Y.2    Eslami, A.C.3    Butler, J.R.4    McCammon, J.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.