Proteomic analysis of SRm160-containing complexes reveals a conserved association with cohesin

Journal of Biological Chemistry

Volumn 280, Issue 51, 2005, Pages 42227-42236

  McCracken, Susan ^a   Longman, Dasa ^c   Marcon, Edyta ^d   Moens, Peter ^d   Downey, Michael ^b   Nickerson, Jeffrey A ^e   Jessberger, Rolf ^f   Wilde, Andrew ^b   Caceres, Javier F ^c   Emili, Andrew ^a,b   Blencowe, Benjamin J ^a,b  

^a UNIVERSITY OF TORONTO   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

^c UNIVERSITY OF EDINBURGH   (United Kingdom)

^d YORK UNIVERSITY   (Canada)

^e UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^f UNIVERSITY HOSPITAL CARL GUSTAV CARUS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CHARACTERIZATION; IMMUNOLOGY; MASS SPECTROMETRY; PROTEINS; PURIFICATION; RNA;

CAENORHABDITIS ELEGANS; EXON JUNCTION COMPLEX; IMMUNOPRECIPITATION; PROTEOMIC ANALYSIS;

IMMUNIZATION;

COHESIN; MESSENGER RNA; NUCLEAR MATRIX PROTEIN; PROTEIN RAD1; PROTEIN RAD21; PROTEIN SA2; PROTEIN SMC1ALPHA; PROTEIN SMC3; PROTEIN SRM160; PROTEIN SUBUNIT; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CAENORHABDITIS ELEGANS; CHROMATIN; CONTROLLED STUDY; EXON; HUMAN; HUMAN CELL; IMMUNOPRECIPITATION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; PROTEOMICS; RNA INTERFERENCE; RNA METABOLISM; RNA PROCESSING; RNA SPLICING; RNA TRANSLATION; RNA TRANSPORT; SISTER CHROMATID; TANDEM MASS SPECTROMETRY;

CAENORHABDITIS ELEGANS;

EID: 29644440031     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M507410200     Document Type: Article

References (64)

1. Aebersold, R., and Mann, M. (2003) Nature 422, 198-207
2. Tian, Q., Stepaniants, S. B., Mao, M., Weng, L., Feetham, M. C., Doyle, M. J., Yi, E. C., Dai, H., Thorsson, V., Eng, J., Goodlett, D., Berger, J. P., Gunter, B., Linseley, P. S., Stoughton, R. B., Aebersold, R., Collins, S. J., Hanlon, W. A., and Hood, L. E. (2004) Mol. Cell. Proteomics 3, 960-969
3. Yates, J. R., III (2004) Annu. Rev. Biophys. Biomol. Struct. 33, 297-316
4. Blencowe, B. J., Issner, R., Nickerson, J. A., and Sharp, P. A. (1998) Genes Dev. 12, 996-1009
5. Eldridge, A. G., Li, Y., Sharp, P. A., and Blencowe, B. J. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 6125-6130
6. Le Hir, H., Izaurralde, E., Maquat, L. E., and Moore, M. J. (2000) EMBO J. 19, 6860-6869
7. McCracken, S., Lambermon, M., and Blencowe, B. J. (2002) Mol. Cell. Biol. 22, 148-160
8. Szymczyna, B. R., Bowman, J., McCracken, S., Pineda-Lucena, A., Lu, Y., Cox, B., Lambermon, M., Graveley, B. R., Arrowsmith, C. H., and Blencowe, B. J. (2003) Genes Dev. 17, 461-475
9. Blencowe, B. J., Nickerson, J. A., Issner, R., Penman, S., and Sharp, P. A. (1994) J. Cell Biol. 127, 593-607
10. Wan, K. M., Nickerson, J. A., Krockmalnic, G., and Penman, S. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 594-598
11. McCracken, S., Longman, D., Johnstone, I. L., Caceres, J. F., and Blencowe, B. J. (2003) J. Biol. Chem. 278, 44153-44160
12. Le Hir, H., Moore, M. J., and Maquat, L. E. (2000) Genes Dev. 14, 1098-1108
13. Le Hir, H., Gatfield, D., Braun, I. C., Forler, D., and Izaurralde, E. (2001) EMBO Rep. 2, 1119-1124
14. Tange, T. O., Nott, A., and Moore, M. (2004) Curr. Opin. Cell Biol. 16, 279-284
15. Nasmyth, K. (2002) Science 297, 559-565
16. Gruber, S., Haering, C. H., and Nasmyth, K. (2003) Cell 112, 765-777
17. Hagstrom, K. A., and Meyer, B. J. (2003) Nat. Rev. Genet. 4, 520-534
18. Jessberger, R. (2002) Nat. Rev. Mol. Cell. Biol. 3, 767-778
19. Li, Y., and Blencowe, B. J. (1999) J. Biol. Chem. 274, 35074-35079
20. Dignam, J. D., Lebovitz, R. M., and Roeder, R. G. (1983) Nucleic Acids Res. 11, 1475-1489
21. Murray, A. W. (1991) Methods Cell Biol. 36, 581-605
22. Krogan, N. J., Peng, W. T., Cagney, G., Robinson, M. D., Haw, R., Zhong, G., Guo, X., Zhang, X., Canadien, V., Richards, D. P., Beattie, B. K., Lalev, A., Zhang, W., Davierwala, A. P., Mnaimneh, S., Starostine, A., Tikuisis, A. P., Grigull, J., Datta, N., Bray, J. E., Hughes, T. R., Emili, A., and Greenblatt, J. F. (2004) Mol. Cell 13, 225-239
23. Eijpe, M., Heyting, C., Gross, B., and Jessberger, R. (2000) J. Cell Sci. 113, 673-682
24. Longman, D., Johnstone, I. L., and Caceres, J. F. (2000) EMBO J. 19, 1625-1637
25. Tarsounas, M., Morita, T., Pearlman, R. E., and Moens, P. B. (1999) J. Cell Biol. 147, 207-220
26. Dobson, M. J., Pearlman, R. E., Karaiskakis, A., Spyropoulos, B., and Moens, P. B. (1994) J. Cell Sci. 107, 2749-2760
27. Blencowe, B. J., Issner, R., Kim, J., McCaw, P., and Sharp, P. A. (1995) RNA (N. Y.) 1, 852-865
28. Blencowe, B. J., Bauren, G., Eldridge, A. G., Issner, R., Nickerson, J. A., Rosonina, E., and Sharp, P. A. (2000) RNA (N. Y.) 6, 111-120
29. Thompson, N. E., Steinberg, T. H., Aronson, D. B., and Burgess, R. R. (1989) J. Biol. Chem. 264, 11511-11520
30. Mortillaro, M. J., Blencowe, B. J., Wei, X., Nakayasu, H., Du, L., Warren, S. L., Sharp, P. A., and Berezney, R. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 8253-8257
31. Emili, A., Shales, M., McCracken, S., Xie, W., Tucker, P. W., Kobayashi, R., Blencowe, B. J., and Ingles, C. J. (2002) RNA (N. Y.) 8, 1102-1111
32. Champion-Arnaud, P., and Reed, R. (1994) Genes Dev. 8, 1974-1983
33. Gozani, O., Feld, R., and Reed, R. (1996) Genes Dev. 10, 233-243
34. He, L., Weber, A., and Levens, D. (2000) Nucleic Acids Res. 28, 4558-4565
35. Rappsilber, J., Ryder, U., Lamond, A. I., and Mann, M. (2002) Genome Res. 12, 1231-1245
36. Dowhan, D. H., Hong, E. P., Auboeuf, D., Dennis, A. P., Wilson, M. M., Berget, S. M., and O'Malley, B. W. (2005) Mol. Cell 17, 429-439
37. Sauve, F., McBroom, L. D., Gallant, J., Moraitis, A. N., Labrie, F., and Giguere, V. (2001) Mol. Cell. Biol. 21, 343-353
38. Albert, T. K., Lemaire, M., van Berkum, N. L., Gentz, R., Collart, M. A., and Timmers, H. T. (2000) Nucleic Acids Res. 28, 809-817
39. Tong, J. K., Hassig, C. A., Schnitzler, G. R., Kingston, R. E., and Schreiber, S. L. (1998) Nature 395, 917-921
40. Wade, P. A., Jones, P. L., Vermaak, D., and Wolffe, A. P. (1998) Curr. Biol. 8, 843-846
41. Xue, Y., Wong, J., Moreno, G. T., Young, M. K., Cote, J., and Wang, W. (1998) Mol. Cell 2, 851-861
42. Zhang, Y., LeRoy, G., Seelig, H. P., Lane, W. S., and Reinberg, D. (1998) Cell 95, 279-289
43. Jessberger, R., Podust, V., Hubscher, U., and Berg, P. (1993) J. Biol. Chem. 268, 15070-15079
44. Jessberger, R., Riwar, B., Baechtold, H., and Akhmedov, A. T. (1996) EMBO J. 15, 4061-4068
45. Stursberg, S., Riwar, B., and Jessberger, R. (1999) Gene (Amst.) 228, 1-12
46. Losada, A., Yokochi, T., Kobayashi, R., and Hirano, T. (2000) J. Cell Biol. 150, 405-416
47. Sumara, I., Vorlaufer, E., Gieffers, C., Peters, B. H., and Peters, J. M. (2000) J. Cell Biol. 151, 749-762
48. Kim, S. T., Xu, B., and Kastan, M. B. (2002) Genes Dev. 16, 560-570
49. Yazdi, P. T., Wang, Y., Zhao, S., Patel, N., Lee, E. Y., and Qin, J. (2002) Genes Dev. 16, 571-582
50. Losada, A., Hirano, M., and Hirano, T. (1998) Genes Dev. 12, 1986-1997
51. Hakimi, M. A., Bochar, D. A., Schmiesing, J. A., Dong, Y., Barak, O. G., Speicher, D. W., Yokomori, K., and Shiekhattar, R. (2002) Nature 418, 994-998
52. MacCallum, D. E., Losada, A., Kobayashi, R., and Hirano, T. (2002) Mol. Biol. Cell 13, 25-39
53. Sonoda, E., Matsusaka, T., Morrison, C., Vagnarelli, P., Hoshi, O., Ushiki, T., Nojima, K., Fukagawa, T., Waizenegger, I. C., Peters, J. M., Earnshaw, W. C., and Takeda, S. (2001) Dev. Cell 1, 759-770
54. Roth, M. B., Zahler, A. M., and Stolk, J. A. (1991) J. Cell Biol. 115, 587-596
55. Schmiesing, J. A., Ball, A. R., Jr., Gregson, H. C., Alderton, J. M., Zhou, S., and Yokomori, K. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 12906-12911
56. Longman, D., McGarvey, T., McCracken, S., Johnstone, I. L., Blencowe, B. J., and Caceres, J. F. (2001) Curr. Biol. 11, 1923-1933
57. Simmer, F., Moorman, C., Van Der Linden, A. M., Kuijk, E., Van Den Berghe, P. V., Kamath, R., Fraser, A. G., Ahringer, J., and Plasterk, R. H. (2003) PLoS Biol. 1, 77-84
58. Pasierbek, P., Jantsch, M., Melcher, M., Schleiffer, A., Schweizer, D., and Loidl, J. (2001) Genes Dev. 15, 1349-1360
59. Pasierbek, P., Fodermayr, M., Jantsch, V., Jantsch, M., Schweizer, D., and Loidl, J. (2003) Exp. Cell Res. 289, 245-255
60. Revenkova, E., Eijpe, M., Heyting, C., Hodges, C. A., Hunt, P. A., Liebe, B., Scherthan, H., and Jessberger, R. (2004) Nat. Cell Biol. 6, 555-562
61. Eijpe, M., Offenberg, H., Jessberger, R., Revenkova, E., and Heyting, C. (2003) J. Cell Biol. 160, 657-670
62. Hartmuth, K., Urlaub, H., Vornlocher, H. P., Will, C. L., Gentzel, M., Wilm, M., and Luhrmann, R. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 16719-16724
63. Makarova, O. V., Makarov, E. M., Urlaub, H., Will, C. L., Gentzel, M., Wilm, M., and Luhrmann, R. (2004) EMBO J. 23, 2381-2391
64. Vijayraghavan, U., Company, M., and Abelson, J. (1989) Genes Dev. 3, 1206-1216