Rapid assessment of two major repair activities against DNA double-strand breaks in vertebrate cells

Biochemical and Biophysical Research Communications

Volumn 339, Issue 2, 2006, Pages 583-590

  Sasaki, Shigeru ^a,e   Sato, Masanori ^a   Katsura, Yukitaka ^a   Kurimasa, Akihiro ^b   Chen, David J ^c   Takeda, Shunichi ^d   Kuwano, Hiroyuki ^e   Yokota, Jun ^a   Kohno, Takashi ^a  

^a NATIONAL CANCER CENTER RESEARCH INSTITUTE   (Japan)

^b TOTTORI UNIVERSITY   (Japan)

^c UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^d KYOTO UNIVERSITY   (Japan)

^e GUNMA UNIVERSITY   (Japan)

Author keywords

DNA double strand break; DT40; Homologous recombinational repair; Non homologous end joining; Single strand annealing

Indexed keywords

DOUBLE STRANDED DNA; PLASMID DNA;

ANIMAL CELL; ARTICLE; CELL LINE; CONTROLLED STUDY; DNA REPAIR; DNA STRAND BREAKAGE; DNA TRANSFECTION; GENE TARGETING; HUMAN; HUMAN CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; SEQUENCE HOMOLOGY; TANDEM REPEAT; VERTEBRATE;

BASE SEQUENCE; BIOLOGICAL ASSAY; CELL LINE; DNA; DNA DAMAGE; DNA REPAIR; HUMANS; MOLECULAR SEQUENCE DATA; PLASMIDS; RECOMBINATION, GENETIC; TIME FACTORS;

ANIMALIA; VERTEBRATA;

EID: 28444433111     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.11.052     Document Type: Article

References (40)

1. J.E. Haber Partners and pathways repairing a double-strand break Trends Genet. 16 2000 259 264
2. P. Pfeiffer, W. Goedecke, and G. Obe Mechanisms of DNA double-strand break repair and their potential to induce chromosomal aberrations Mutagenesis 15 2000 289 302
3. K. Valerie, and L.F. Povirk Regulation and mechanisms of mammalian double-strand break repair Oncogene 22 2003 5792 5812
4. G. Iliakis, H. Wang, A.R. Perrault, W. Boecker, B. Rosidi, F. Windhofer, W. Wu, J. Guan, G. Terzoudi, and G. Pantelias Mechanisms of DNA double strand break repair and chromosome aberration formation Cytogenet. Genome Res. 104 2004 14 20
5. M. Jasin Chromosome breaks and genomic instability Cancer Invest. 18 2000 78 86
6. M. Takata, M.S. Sasaki, E. Sonoda, C. Morrison, M. Hashimoto, H. Utsumi, Y. Yamaguchi-Iwai, A. Shinohara, and S. Takeda Homologous recombination and non-homologous end-joining pathways of DNA double-strand break repair have overlapping roles in the maintenance of chromosomal integrity in vertebrate cells EMBO J. 17 1998 5497 5508
7. M.L. Dronkert, H.B. Beverloo, R.D. Johnson, J.H. Hoeijmakers, M. Jasin, and R. Kanaar Mouse RAD54 affects DNA double-strand break repair and sister chromatid exchange Mol. Cell. Biol. 20 2000 3147 3156
8. N.E. Sharpless, D.O. Ferguson, R.C. O'Hagan, D.H. Castrillon, C. Lee, P.A. Farazi, S. Alson, J. Fleming, C.C. Morton, K. Frank, L. Chin, F.W. Alt, and R.A. DePinho Impaired nonhomologous end-joining provokes soft tissue sarcomas harboring chromosomal translocations, amplifications, and deletions Mol. Cell 8 2001 1187 1196
9. A. Tutt, D. Bertwistle, J. Valentine, A. Gabriel, S. Swift, G. Ross, C. Griffin, J. Thacker, and A. Ashworth Mutation in Brca2 stimulates error-prone homology-directed repair of DNA double-strand breaks occurring between repeated sequences EMBO J. 20 2001 4704 4716
10. G.J. Downing, and J.F. Battey Jr. Technical assessment of the first 20 years of research using mouse embryonic stem cell lines Stem Cells 22 2004 1168 1180
11. E. Sonoda, C. Morrison, Y.M. Yamashita, M. Takata, and S. Takeda Reverse genetic studies of homologous DNA recombination using the chicken B-lymphocyte line, DT40 Philos. Trans. R. Soc. Lond. B. Biol. Sci. 356 2001 111 117
12. P. Winding, and M.W. Berchtold The chicken B cell line DT40: a novel tool for gene disruption experiments J. Immunol. Methods 249 2001 1 16
13. T. Waldman, K.W. Kinzler, and B. Vogelstein p21 is necessary for the p53-mediated G1 arrest in human cancer cells Cancer Res. 55 1995 5187 5190
14. K. Polyak, T. Waldman, T.C. He, K.W. Kinzler, and B. Vogelstein Genetic determinants of p53-induced apoptosis and growth arrest Genes Dev. 10 1996 1945 1952
15. R.B. Cervantes, J.R. Stringer, C. Shao, J.A. Tischfield, and P.J. Stambrook Embryonic stem cells and somatic cells differ in mutation frequency and type Proc. Natl. Acad. Sci. USA 99 2002 3586 3590
16. T. Matsuda, M. Kawanishi, T. Yagi, S. Matsui, and H. Takebe Specific tandem GG to TT base substitutions induced by acetaldehyde are due to intra-strand crosslinks between adjacent guanine bases Nucleic Acids Res. 26 1998 1769 1774
17. N. Sunaga, T. Kohno, K. Shinmura, T. Saitoh, R. Saito, and J. Yokota OGG1 protein suppresses G:C to T:A mutation in a shuttle vector containing 8-hydroxyguanine in human cells Carcinogenesis 22 2001 1355 1362
18. A. Yamane, K. Shinmura, N. Sunaga, T. Saitoh, S. Yamaguchi, K. Shinmura, K. Yoshimura, H. Murakami, Y. Nojima, T. Kohno, and J. Yokota Suppressive activities of OGG1 and MYH proteins against G:C to T:A mutations caused by 8-hydroxyguanine but not by benzo[a]pyrene diol epoxide in human cells in vivo Carcinogenesis 24 2003 1031 1037
19. A. Yamane, T. Kohno, K. Ito, N. Sunaga, K. Aoki, K. Yoshimura, H. Murakami, Y. Nojima, and J. Yokota Differential ability of polymorphic OGG1 proteins to suppress mutagenesis induced by 8-hydroxyguanine in human cell in vivo Carcinogenesis 25 2004 1689 1694
20. C.W. Anderson, J.J. Dunn, P.I. Freimuth, A.M. Galloway, and M.J. Allalunis-Turner Frameshift mutation in PRKDC, the gene for DNA-PKcs, in the DNA repair-defective, human, glioma-derived cell line M059J Radiat. Res. 156 2001 2 9
21. C. Allen, A. Kurimasa, M.A. Brenneman, D.J. Chen, and J.A. Nickoloff DNA-dependent protein kinase suppresses double-strand break-induced and spontaneous homologous recombination Proc. Natl. Acad. Sci. USA 99 2002 3758 3763
22. K. Hamada, T. Kohno, M. Takahashi, M. Yamazaki, H. Tashiro, C. Sugawara, S. Ohwada, Y. Sekido, J.D. Minna, and J. Yokota Two regions of homozygous deletion clusters at chromosome band 9p21 in human lung cancer Genes Chromosomes Cancer 27 2000 308 318
23. Y. Peng, Q. Zhang, H. Nagasawa, R. Okayasu, H.L. Liber, and J.S. Bedford Silencing expression of the catalytic subunit of DNA-dependent protein kinase by small interfering RNA sensitizes human cells for radiation-induced chromosome damage, cell killing, and mutation Cancer Res. 62 2002 6400 6404
24. E. Sonoda, M.S. Sasaki, J.M. Buerstedde, O. Bezzubova, A. Shinohara, H. Ogawa, M. Takata, Y. Yamaguchi-Iwai, and S. Takeda Rad51-deficient vertebrate cells accumulate chromosomal breaks prior to cell death EMBO J. 17 1998 598 608
25. J. Rubnitz, and S. Subramani The minimum amount of homology required for homologous recombination in mammalian cells Mol. Cell. Biol. 4 1984 2253 2258
26. P. Branch, R. Hampson, and P. Karran DNA mismatch binding defects, DNA damage tolerance, and mutator phenotypes in human colorectal carcinoma cell lines Cancer Res. 55 1995 2304 2309
27. R.J. Slebos, and J.A. Taylor A novel host cell reactivation assay to assess homologous recombination capacity in human cancer cell lines Biochem. Biophys. Res. Commun. 281 2001 212 219
28. H. Willers, E.E. McCarthy, P. Hubbe, J. Dahm-Daphi, and S.N. Powell Homologous recombination in extrachromosomal plasmid substrates is not suppressed by p53 Carcinogenesis 22 2001 1757 1763
29. C. Baldeyron, E. Jacquemin, J. Smith, C. Jacquemont, I. De Oliveira, S. Gad, J. Feunteun, D. Stoppa-Lyonnet, and D. Papadopoulo A single mutated BRCA1 allele leads to impaired fidelity of double strand break end-joining Oncogene 21 2002 1401 1410
30. S.J. Collis, V.K. Sangar, A. Tighe, S.A. Roberts, N.W. Clarke, J.H. Hendry, and G.P. Margison Development of a novel rapid assay to assess the fidelity of DNA double-strand-break repair in human tumour cells Nucleic Acids Res. 30 2002 E1
31. J. Oshima, S. Huang, C. Pae, J. Campisi, and R.H. Schiestl Lack of WRN results in extensive deletion at nonhomologous joining ends Cancer Res. 62 2002 547 551
32. H. Tauchi, J. Kobayashi, K. Morishima, D.C. van Gent, T. Shiraishi, N.S. Verkaik, D. vanHeems, E. Ito, A. Nakamura, E. Sonoda, M. Takata, S. Takeda, S. Matsuura, and K. Komatsu Nbs1 is essential for DNA repair by homologous recombination in higher vertebrate cells Nature 420 2002 93 98
33. N.S. Verkaik, R.E. Esveldt-van Lange, D. van Heemst, H.T. Bruggenwirth, J.H. Hoeijmakers, M.Z. Zdzienicka, and D.C. van Gent Different types of V(D)J recombination and end-joining defects in DNA double-strand break repair mutant mammalian cells Eur. J. Immunol. 32 2002 701 709
34. H. Willers, F. Xia, and S.N. Powell Recombinational DNA repair in cancer and normal cells: the challenge of functional analysis J. Biomed. Biotechnol. 2 2002 86 93
35. Q. Zhong, C.F. Chen, P.L. Chen, and W.H. Lee BRCA1 facilitates microhomology-mediated end joining of DNA double strand breaks J. Biol. Chem. 277 2002 28641 28647
36. S. Sengupta, S.P. Linke, R. Pedeux, Q. Yang, J. Farnsworth, S.H. Garfield, K. Valerie, J.W. Shay, N.A. Ellis, B. Wasylyk, and C.C. Harris BLM helicase-dependent transport of p53 to sites of stalled DNA replication forks modulates homologous recombination EMBO J. 22 2003 1210 1222
37. A. Dudas, and M. Chovanec DNA double-strand break repair by homologous recombination Mutat. Res. 566 2004 131 167
38. M.S. Sasaki, M. Takata, E. Sonoda, A. Tachibana, and S. Takeda Recombination repair pathway in the maintenance of chromosomal integrity against DNA interstrand crosslinks Cytogenet. Genome Res. 104 2004 28 34
39. E. Van Dyck, A.Z. Stasiak, A. Stasiak, and S.C. West Visualization of recombination intermediates produced by RAD52-mediated single-strand annealing EMBO Rep. 2 2001 905 909
40. J. Smith, C. Baldeyron, I. De Oliveira, M. Sala-Trepat, and D. Papadopoulo The influence of DNA double-strand break structure on end-joining in human cells Nucleic Acids Res. 29 2001 4783 4792