Expression profiling of human fetal growth plate cartilage by EST sequencing

Matrix Biology

Volumn 24, Issue 8, 2005, Pages 530-538

  Tagariello, Andreas ^a   Schlaubitz, Silke ^b,c   Hankeln, Thomas ^b   Mohrmann, Gerrit ^d   Stelzer, Christiane ^b   Schweizer, Anja ^a   Hermanns, Pia ^b,c   Lee, Brendan ^c   Schmidt, Erwin R ^b   Winterpacht, Andreas ^a   Zabel, Bernhard ^b  

^a UNIVERSITY OF ERLANGEN NUREMBERG   (Germany)

^b JOHANNES GUTENBERG UNIVERSITY   (Germany)

^c BAYLOR COLLEGE OF MEDICINE   (United States)

^d LEIBNIZ INSTITUTE FOR EXPERIMENTAL VIROLOGY   (Germany)

Author keywords

ESTs; Expression profiling; Growth plate; Skeletal development

Indexed keywords

COMPLEMENTARY DNA; MATRIX PROTEIN;

ARTICLE; BONE DEVELOPMENT; CALCULATION; CARTILAGE; CHONDRODYSPLASIA; COMPUTER ANALYSIS; COMPUTER MODEL; DEVELOPMENTAL STAGE; DNA LIBRARY; EXPRESSED SEQUENCE TAG; FETUS; GENE EXPRESSION PROFILING; GENE FREQUENCY; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC DISORDER; GENETIC TRANSCRIPTION; GROWTH PLATE; HEMOSTASIS; HUMAN; HUMAN TISSUE; NUCLEOTIDE SEQUENCE; PERINATAL PERIOD; PRENATAL PERIOD; PRIORITY JOURNAL; PROTEIN EXPRESSION; SEQUENCE ANALYSIS; TISSUE SPECIFICITY;

EXPRESSED SEQUENCE TAGS; EXTRACELLULAR MATRIX PROTEINS; FETUS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GROWTH PLATE; HUMANS; PROTEOGLYCANS;

EID: 28244487472     PISSN: 0945053X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.matbio.2005.08.002     Document Type: Article

References (42)

1. J. Ahn, H.J. Ludecke, S. Lindow, W.A. Horton, B. Lee, M.J. Wagner, B. Horsthemke, and D.E. Wells Cloning of the putative tumour suppressor gene for hereditary multiple exostoses (EXT1) Nat. Genet. 11 1995 137 143
2. T. Aigner, E. Bartnik, F. Sohler, and R. Zimmer Functional genomics of osteoarthritis: on the way to evaluate disease hypotheses Clin. Orthop. 2004 S138 S143
3. S. Audic, and J.M. Claverie The significance of digital gene expression profiles Genome Res. 7 1997 986 995
4. S. Bord, A. Horner, R.M. Hembry, J.J. Reynolds, and J.E. Compston Distribution of matrix metalloproteinases and their inhibitor, TIMP-1, in developing human osteophytic bone J. Anat. 191 1997 39 48
5. S. Bord, A. Horner, R.M. Hembry, and J.E. Compston Stromelysin-1 (MMP-3) and stromelysin-2 (MMP-10) expression in developing human bone: potential roles in skeletal development Bone 23 1998 7 12
6. S. Bortoluzzi, F. d'Alessi, C. Romualdi, and G.A. Danieli The human adult skeletal muscle transcriptional profile reconstructed by a novel computational approach Genome Res. 10 2000 344 349
7. S. Bortoluzzi, F. d'Alessi, C. Romualdi, and G.A. Danieli Differential expression of genes coding for ribosomal proteins in different human tissues Bioinformatics 17 2001 1152 1157
8. J. Fukushi, M. Inatani, Y. Yamaguchi, and W.B. Stallcup Expression of NG2 proteoglycan during endochondral and intramembranous ossification Dev. Dyn. 228 2003 143 148
9. C.M. Hall International nosology and classification of constitutional disorders of bone (2001) Am. J. Med. Genet. 113 2002 65 77
10. G. Haeusler, I. Walter, M. Helmreich, and M. Egerbacher Localization of matrix metalloproteinases, (MMPs) their tissue inhibitors, and vascular endothelial growth factor (VEGF) in growth plates of children and adolescents indicates a role for MMPs in human postnatal growth and skeletal maturation Calcif. Tissue Int. 76 2005 326 335
11. A. Hotz-Wagenblatt, T. Hankeln, P. Ernst, K.H. Glatting, E.R. Schmidt, and S. Suhai ESTAnnotator: a tool for high throughput EST annotation Nucleic Acids Res. 31 2003 3716 3719
12. Y.K. Jung, J.H. Jeong, H.M. Ryoo, H.N. Kim, Y.J. Kim, E.K. Park, H.J. Si, S.Y. Kim, M. Takigawa, B.H. Lee, R.W. Park, I.S. Kim, and J.Y. Choi Gene expression profile of human chondrocyte HCS-2/8 cell line by EST sequencing analysis Gene 330 2004 85 92
13. A. Kassner, U. Hansen, N. Miosge, D.P. Reinhardt, T. Aigner, L. Bruckner-Tuderman, P. Bruckner, and S. Grassel Discrete integration of collagen XVI into tissue-specific collagen fibrils or beaded microfibrils Matrix Biol. 22 2003 131 143
14. A. Kassner, K. Tiedemann, H. Notbohm, T. Ludwig, M. Morgelin, D.P. Reinhardt, M.L. Chu, P. Bruckner, and S. Grassel Molecular structure and interaction of recombinant human type XVI collagen J. Mol. Biol. 339 2004 835 853
15. L. Kevorkian, D.A. Young, C. Darrah, S.T. Donell, L. Shepstone, S. Porter, S.M. Brockbank, D.R. Edwards, A.E. Parker, and I.M. Clark Expression profiling of metalloproteinases and their inhibitors in cartilage Arthritis Rheum. 50 2004 131 141
16. I. Kou, and S. Ikegawa SOX9-dependent and -independent transcriptional regulation of human cartilage link protein J. Biol. Chem. 279 2004 50942 50948
17. H.M. Kronenberg Developmental regulation of the growth plate Nature 423 2003 332 336
18. S. Kumar, J.R. Connor, R.A. Dodds, W. Halsey, M. Van Horn, J. Mao, G. Sathe, P. Mui, P. Agarwal, A.M. Badger, J.C. Lee, M. Gowen, and M.W. Lark Identification and initial characterization of 5000 expressed sequenced tags (ESTs) each from adult human normal and osteoarthritic cartilage cDNA libraries Osteoarthr. Cartil. 9 2001 641 653
19. C.H. Lai, and M.L. Chu Tissue distribution and developmental expression of type XVI collagen in the mouse Tissue Cell 28 1996 155 164
20. V. Mattot, M.B. Raes, P. Henriet, Y. Eeckhout, D. Stehelin, B. Vandenbunder, and X. Desbiens Expression of interstitial collagenase is restricted to skeletal tissue during mouse embryogenesis J. Cell. Sci. 108 Pt 2 1995 529 535
21. S. Mundlos, H. Engel, I. Michel-Behnke, and B. Zabel Distribution of type I and type II collagen gene expression during the development of human long bones Bone 11 1990 275 279
22. S. Mundlos, B. Schwahn, T. Reichert, and B. Zabel Distribution of osteonectin mRNA and protein during human embryonic and fetal development J. Histochem. Cytochem. 40 1992 283 291
23. P.J. Neame, H. Tapp, and A. Azizan Noncollagenous, nonproteoglycan macromolecules of cartilage Cell. Mol. Life. Sci. 55 1999 1327 1340
24. L. Niswander Pattern formation: old models out on a limb Nat. Rev. Genet. 4 2003 133 143
25. H. Okihana, and K. Yamada Preparation of a cDNA library and preliminary assessment of 1400 genes from mouse growth cartilage J. Bone Miner. Res. 14 1999 304 310
26. J.M. Pace, M. Corrado, C. Missero, and P.H. Byers Identification, characterization and expression analysis of a new fibrillar collagen gene, COL27A1 Matrix Biol. 22 2003 3 14
27. M. Perala, M. Savontaus, M. Metsaranta, and E. Vuorio Developmental regulation of mRNA species for types II, IX and XI collagens during mouse embryogenesis Biochem. J. 324 Pt 1 1997 209 216
28. J. Peters, J. Sechrist, S. Luetolf, G. Loredo, and M. Bronner-Fraser Spatial expression of the alternatively spliced EIIIB and EIIIA segments of fibronectin in the early chicken embryo Cell Commun. Adhes. 9 2002 221 238
29. R. Pogue, E. Sebald, L. King, E. Kronstadt, D. Krakow, and D.H. Cohn A transcriptional profile of human fetal cartilage Matrix Biol. 23 2004 299 307
30. Y. Sasano, J.-X. Zhu, M. Tsubota, I. Takahashi, K. Onodera, I. Mizoguchi, and M. Kagayama Gene expression of MMP8 and MMP13 during embryonic development of bone and cartilage in the rat mandible and hind limb J Histochem. Cytochem. 50 2002 325 332
31. I. Sekiya, J.T. Vuoristo, B.L. Larson, and D.J. Prockop In vitro cartilage formation by human adult stem cells from bone marrow stroma defines the sequence of cellular and molecular events during chondrogenesis Proc. Natl. Acad. Sci. U. S. A. 99 2002 4397 4402
32. J.W. Spranger, P.W. Brill, and A.K. Poznanski Bone Dysplasias. An Atlas of Genetic Disorders of Skeletal Development 2002 Urban & Fischer München, Jena
33. D. Stickens, D.J. Behonick, N. Ortega, B. Heyer, B. Hartenstein, Y. Yu, A.J. Fosang, M. Schorpp-Kistner, P. Angel, and Z. Werb Altered endochondral bone development in matrix metalloproteinase 13-deficient mice Development 131 2004 5883 5895
34. M. van der Rest, and R. Garrone Collagen family of proteins FASEB J. 5 1991 2814 2823
35. J.C. Venter, S. Levy, T. Stockwell, K. Remington, and A. Halpern Massive parallelism, randomness and genomic advances Nat. Genet. 33 2003 219 227
36. M.P. Vincenti, and C.E. Brinckerhoff Transcriptional regulation of collagenase (MMP-1, MMP-13) genes in arthritis: integration of complex signaling pathways for the recruitment of gene-specific transcription factors Arthritis Res. 4 2002 157 164
37. R.J. Waddington, H.C. Roberts, R.V. Sugars, and E. Schonherr Differential roles for small leucine-rich proteoglycans in bone formation Eur. Cell. Mater. 6 2003 12 21
38. Y. Wang, F. Middleton, J.A. Horton, L. Reichel, C.E. Farnum, and T.A. Damron Microarray analysis of proliferative and hypertrophic growth plate zones identifies differentiation markers and signal pathways Bone 35 2004 1273 1293
39. H. Watanabe, and Y. Yamada Mice lacking link protein develop dwarfism and craniofacial abnormalities Nat. Genet. 21 1999 225 229
40. C.W. Wu, E.V. Tchetina, F. Mwale, K. Hasty, I. Pidoux, A. Reiner, J. Chen, H.E. Van Wart, and A.R. Poole Proteolysis involving matrix metalloproteinase 13 (collagenase-3) is required for chondrocyte differentiation that is associated with matrix mineralization J. Bone Miner. Res. 17 2002 639 651
41. M.F. Young, Y. Bi, L. Ameye, and X.D. Chen Biglycan knockout mice: new models for musculoskeletal diseases Glycoconj. J. 19 2002 257 262
42. H. Zhang, K.W. Marshall, H. Tang, D.M. Hwang, M. Lee, and C.C. Liew Profiling genes expressed in human fetal cartilage using 13,155 expressed sequence tags Osteoarthr. Cartil. 11 2003 309 319