Profiling genes expressed in human fetal cartilage using 13, 155 expressed sequence tags

Osteoarthritis and Cartilage

Volumn 11, Issue 5, 2003, Pages 309-319

  Zhang, H ^a,b   Marshall, K W ^a,b   Tang, H ^a   Hwang, D M ^c   Lee, M ^c   Liew, C C ^c  

^a GeneNews Limited   (Canada)

^b TORONTO WESTERN HOSPITAL   (Canada)

^c UNIVERSITY OF TORONTO   (Canada)

Author keywords

cDNA library; Expressed sequence tags; Fetal cartilage

Indexed keywords

AGGRECAN; COLLAGEN TYPE 3; COMPLEMENTARY DNA; CONNECTIVE TISSUE GROWTH FACTOR; DECORIN; FIBROBLAST GROWTH FACTOR; GELATINASE A; GENOMIC DNA; GLYPICAN; PROTEINASE; PROTEOGLYCAN; SOMATOMEDIN B; SOMATOMEDIN B RECEPTOR; SOMATOMEDIN BINDING PROTEIN; TISSUE INHIBITOR OF METALLOPROTEINASE;

ARTICLE; ARTICULAR CARTILAGE; CONTROLLED STUDY; DNA LIBRARY; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; EXPRESSION VECTOR; EXTRACELLULAR MATRIX; FETUS; FETUS DEVELOPMENT; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; HUMAN; HUMAN TISSUE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REDUNDANCY ANALYSIS; SEQUENCE ALIGNMENT; TISSUE SPECIFICITY; UNINDEXED SEQUENCE;

EID: 0038780623     PISSN: 10634584     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1063-4584(03)00032-3     Document Type: Article

References (28)

1. Zaleske DJ. Cartilage and bone development. Instr Course Lect 1998;47:461-8.
2. Buckwalter JA, Mankin HJ. Articular cartilage: tissue design and chondrocyte-matrix interactions. Instr Course Lect 1998;47:477-86.
3. Westacott CI, Sharif M. Cytokines in osteoarthritis: mediators or markers of joint destruction? Semin Arthritis Rheum 1996;25:254-72.
4. Adams MD, Kerlavage AR, Fleischmann RD, Fuldner RA, Bult CJ, Lee NH, et al. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature 1995;377(Suppl):3-174.
5. Hwang DM, Dempsey AA, Wang RX, Rezvani M, Barrans JD, Dai KS, et al. A genome-based resource for molecular cardiovascular medicine: toward a compendium of cardiovascular genes. Circulation 1997;96:4146-203.
6. + hematopoietic stem/progenitor cells by expressed sequence tags and efficient fall-length cDNA cloning. Proc Natl Acad Sci USA 1998;95:8175-80.
7. Hillier LD, Lennon G, Becker M, Bonaldo MF, Chiapelli B, Chissoe S, et al. Generation and analysis of 280,000 human expressed sequence tags. Genome Res 1996;6:807-28.
8. Liew CC, Hwang DM, Wang RX, Ng SH, Dempsey A, Wen DHY, et al. Construction of a human heart cDNA library and identification of cardiovascular based genes (CVBest). Mol Cell Biochem 1997;172:81-7.
9. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990; 215:403-10.
10. Bortoluzzi S, d'Alessi F, Romualdi C, Danieli GA. Differential expression of genes coding for ribosomal proteins in different human tissues. Bioinformatics 2001;17:1152-7.
11. Grimshaw MJ, Mason RM. Modulation of bovine articular chondrocyte gene expression in vitro by oxygen tension. Osteoarthritis Cartilage 2001;9:357-64.
12. Mundlos S, Zabel B. Developmental expression of human cartilage matrix protein. Dev Dyn 1994;199: 241-52.
13. Nakamura S, Kamihagi K, Satakeda H, Katayama M, Pan H, Okamoto H, et al. Enhancement of SPARC (osteonectin) synthesis in arthritic cartilage. Increased levels in synovial fluids from patients with rheumatoid arthritis and regulation by growth factors and cytokines in chondrocyte cultures. Arthritis Rheum 1996;39:539-51.
14. Okihana H, Yamada K. Preparation of a cDNA library and preliminary assessment of 1400 genes from mouse growth cartilage. J Bone Miner Res 1999; 14:304-10.
15. Morrison EH, Ferguson MWJ, Bayliss MT, Archer CW. The developmental of articular cartilage: I. The spatial and temporal patterns of collagen types. J Anat 1996;189:9-22.
16. Treilleux I, Mallein-Gerin F, le Guellec D, Herbage D. Localization of the expression of type I, II, III collagens, and aggrecan core protein genes in developing human articular cartilage. Matrix 1992;12:221-32.
17. Akai J, Kimura A, Hata RI. Transcriptional regulation of the human type I collagen alpha2 (COL1A2) gene by the combination of two dinucleotide repeats. Gene 1999;239:65-73.
18. Eyre DR. The collagens of articular cartilage. Semin Arthritis Rheum 1991;21(3 Suppl 2):2-11.
19. Gregory AE, Keene DR, Tufa SF, Lustrum GP, Morris NP. Developmental distribution of collagen type XII in cartilage: association with articular cartilage and the growth plate. J Bone Miner Res 2001;16:2005-16.
20. De Cat B, David G. Developmental roles of the glypicans. Semin Cell Dev Biol 2001;12:117-25.
21. Pilia G, Hughes-Benzie RM, MacKenzie A, Baybayan P, Chen EY, Huber R, et al. Mutations in GPC3, a glypican gene, cause the Simpson-Golabi-Behmel overgrowth syndrome. Nat Genet 1996;12:241-7.
22. Birnbacher R, Amann G, Breitschopf H, Lassmann H, Suchanek G, Heinz-Erian P. Cellular localization of insulin-like growth factor II mRNA in the human fetus and the placenta: detection with a digoxigenin-labeled cRNA probe and immunocytochemistry. Pediatr Res 1998;43:614-20.
23. Wang E, Wang J, Chin E, Zhou J, Bondy CA. Cellular patterns of like-like growth factor system gene expression in murine chondrogenesis and osteogenesis. Endocrinology 1995;136:2741-51.
24. van Kleffens M, Groffen C, Rosato RR, van den Eijnde SM, van Neck JW, Lindenbergh-Kortleve DJ, et al. mRNA expression patterns of the IGF system during mouse limb bud development, determined by whole mount in situ hybridization. Mol Cell Endocrinol 1998; 138:151-61.
25. Stokes DG, Liu G, Coimbra IB, Piera-Velazquez S, Crowl RM, Jimenez SA. Assessment of the gene expression profile of differentiated and dedifferentiated human fetal chondrocytes by microarray analysis. Arthritis Rheum 2002;46:404-19.
26. Braulke T, Gotz W, Claussen M. Immunohistochemical localization of like-like growth factor binding protein-1, -3, and -4 in human fetal tissues and their analysis in media from fetal tissue explants. Growth Regul 1996;6:55-65.
27. Kessler E, Takahara. K, Biniaminov L, Brusel M, Greenspan DS. Bone morphogenetic protein-1: the type I procollagen c-proteinase. Science 1996;271: 360-2.
28. Kumar S, Connor JR, Dodds RA, Halsey W, Van Horn M, Mao J, et al. Identification and initial characterization of 5000 expressed sequenced tags (ESTs) each from adult human normal and osteoarthritic cartilage cDNA libraries. Osteoarthritis Cartilage 2001;9:641-53.