Preparation of a cDNA library and preliminary assessment of 1400 genes from mouse growth cartilage

Journal of Bone and Mineral Research

Volumn 14, Issue 2, 1999, Pages 304-310

  Okihana, H ^a   Yamada, K ^a  

^a Fujimoto Pharmaceutical Corporation   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

OSTEONECTIN;

ANIMAL TISSUE; ARTICLE; BONE MATRIX; CARTILAGE CELL; CELL GROWTH; DNA LIBRARY; EMBRYO DEVELOPMENT; EXTRACELLULAR MATRIX; GENETIC ANALYSIS; IMMUNOHISTOCHEMISTRY; MOLECULAR CLONING; MOUSE; NONHUMAN; OSSIFICATION; PROTEIN EXPRESSION;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; COLLAGEN; DNA PRIMERS; DNA, COMPLEMENTARY; GENE EXPRESSION; GENE LIBRARY; GROWTH PLATE; MICE; MICE, INBRED BALB C; RNA, MESSENGER;

EID: 0032899909     PISSN: 08840431     EISSN: None     Source Type: Journal    
DOI: 10.1359/jbmr.1999.14.2.304     Document Type: Article

References (48)

1. Kahn AS, Wilcox AS, Polymeropoulos MH, Hopkins JA, Stevens TJ, Robinson M, Orpana AK, Sikela JM 1992 Single pass sequencing and physical and genetic mapping of human brain cDNAs. Nat Genet 2:180-185.
2. Liew CC, Hwang DM, Fung YW, Laurenssen C, Cukerman E, Tsui S, Lee CY 1994 A catalogue of genes in the cardiovascular system as identified by expressed sequence tags. Proc Natl Acad Sci USA 91:10645-10649.
3. Nishiguchi S, Sakuma R, Nomura M, Zou Z, Jearanaisilavong J, Joh T, Yasunaga T, Shimada K 1996 A catalogue of genes in mouse embryonal carcinoma F9 cells identified with expressed sequence tags. J Biochem 119:749-767.
4. Okubo K, Hori N, Matoba R, Niiyama T, Fukushima A, Kojima Y, Matsubara K 1992 Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nat Genet 2:173-179.
5. Sudo K, Chinen K, Nakamura Y 1994 2058 expressed sequence tags (ESTs) from a human fetal lung cDNA library. Genomics 24:276-279.
6. Adams MD, Kelley JM, Gocayne JD, Duhnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF, Kcrlavage AR, McCombie WR, Venter JC 1991 Complementary DNA sequencing: Expressed sequence tags and human genome project. Science 252:1651-1656.
7. Adams MD, Dubnick M, Kerlavage AR, Moreno R, Kelley JM, Utterback TR, Nagle JW, Fields C, Venter JC 1992 Sequence identification of 2,375 human brain genes. Nature 355:632-634.
8. Noonan DM, Horigan EA, Ledbetter SR, Vogeli G, Sasaki M, Yamada Y, Hassell JR 1988 Identification of cDNA clones encoding different domains of the basement membrane heparan sulfate proteoglycan. J Biol Chem 263:16379-16387.
9. Sakai D, Tong H-S, Minkin C 1995 Osteoclast molecular phenotyping by random cDNA sequencing. Bone 17:111-119.
10. Argraves WS, Deak F, Sparks KJ, Kiss I, Goetinck PF 1987 Structural features of cartilage matrix protein deduced from cDNA. Proc Natl Acad Sci USA 84:464-468.
11. Bianco P, Fisher LW, Young MF, Termine JD, Robey PG 1990 Expression and localization of the two small proteoglycans biglycan and decorin in developing human skeletal and nonskeletal tissues. J Histochem Cytochem 38:1549-1563.
12. Bourdon MA, Oldberg A, Pierschbacher M, Ruoslahti E 1985 Molecular cloning and sequence analysis of a chondroitin sulfate proteoglycan cDNA. Proc Natl Acad Sci USA 82:1321-1325.
13. Oldberg A, Franzen A, Heinegard D 1986 Cloning and sequence analysis of rat bone sialoprotein (osteopontin) cDNA reveals an Arg-Gly-Asp cell-binding sequence. Proc Natl Acad Sci USA 83:8819-3823.
14. Castagnola P, Moro G, Descalzi-Cancedda F, Cancedda R 1986 Type X collagen synthesis during in vitro development of chick embryo tibial chondrocytes. J Cell Biol 102:2310-2317.
15. Kravis D, Upholt WB 1985 Quantitation of type II procollagen mRNA levels during chick limb cartilage differentiation. Dev Biol 108:164-172.
16. Leboy PS, Shapiro IM, Ushmann BD, Oshima O, Lin D 1988 Gene expression in mineralising chick epiphyseal cartilage. J Biol Chem 263:8515-8520.
17. Nojima H 1993 Method of mRNA preparation. In: Nojima H (ed.) Methods of Gene Library Preparation, Biomanual series 2. Yohdosya Co., Tokyo. Japan, pp. 33-40. (in Japanese).
18. Nojima H, Kobori M 1993 Method of cDNA preparation: Linker-primer method. In: Nojima H (ed.) Methods of Gene Library Preparation, Biomanual series 2. Yohdosya Co., Tokyo, Japan, pp. 79-94 (in Japanese).
19. Kobori M, Ikeda Y, Nara H, Kato M, Kumegawa M, Nojima H, Kawashima H 1998 Large scale isolation of osteoclast-specific genes by an improved method involving the preparation of a subtracted cDNA library. Genes Cells 3:459-475.
20. Kielty CM, Hopkinson I, Grant ME 1993 Collagen: The collagen family: Structure assembly, and organization in the extracellular matrix. In: Royce PM, Steinmann B (eds.) Connective Tissue and Its Heritable Disorders. Wiley-Liss Inc., New York, NY, U.S.A., pp. 103-147.
21. Line S, Rhodes C, Yamada Y 1993 Molecular biology of cartilage matrix. In: Noda M (ed.) Cellular and Molecular Biology of Bone. Academic Press Inc., San Diego, CA, U.S.A., pp. 539-555.
22. Choi HU, Johnson TL, Pal S, Tang L-H, Rosenberg L, Neame PJ 1989 Characterization of the dermatan sulfate proteoglycans, DS-PGI and DS-PGII, from bovine articular cartilage and skin isolated by octyl-sepharose chromatography. J Biol Chem 264:2876-2884.
23. Roughley P, White RJ 1989 Dermatan sulfate proteoglycans of human articular cartilage: The properties of dermatan sulphate proteoglycans I and II. Biochem J 262:823-827.
24. Dessau W, Sasse J, Timple R, Jilek F, von der Mark K 1978 Synthesis and extracellular deposition of fibronectin in chondrocytes cultures. J Cell Biol 79:342-355.
25. von der Mark K, Goodman S 1993 Adhesive glycoproteins. In: Royce PM, Steinmann B (eds.) Connective Tissue and Its Heritable Disorders. Wiley-Liss Inc., New York, NY, U.S.A., pp. 211-236.
26. Mundlos S, Schwahn B, Reichert T, Zabel B 1992 Distribution of osteonectin mRNA and protein during human embryonic and fetal development. J Histochem Cytochem 40:283-291.
27. Nomura S, Wills AJ, Edwards DR, Heath JK, Hogan BLM 1988 Developmental expression of 2ar (osteopontin) and SPARC (osteonectin) RNA as revealed by in situ hybridization. J Cell Biol 106:441-450.
28. Pacific M, Oshima O, Fisher LW, Young MF, Shapiro IM, Leboy PS 1990 Changes in osteonectin distribution and levels are associated with mineralization of the chicken tibial growth cartilage. Calcif Tissue Int 47:51-61.
29. Ikeda T, Nomura S, Yamaguchi A, Suda T, Yoshiki S 1992 In situ hybridization of bone matrix proteins in undecalcified adult rat bone sections. J Histochem Cytochem 40:1079-1088.
30. Weinreb M, Shinar D, Rodan GA 1990 Different pattern of alkaline phosphatase, osteopontin, and osteocalcin expression in developing rat bone visualized by in situ hybridization. J Bone Miner Res 5:831-842.
31. Larsson T, Sommarin Y, Paulsson M, Antonsson P, Hedbom E, Wendel M, Heinegard D 1991 Cartilage matrix proteins: A basic 36-kDa protein with a restricted distribution to cartilage and bone. J Biol Chem 266:20428-20433.
32. Neame PJ, Sommarin Y, Boynton RE, Heinegard D 1994 The structure of a 38-kDa leucine-rich protein (chondroadherin) isolated from bovine cartilage. J Biol Chem 269:21547-21554.
33. Hedbom E, Antonsson P, Hjerpe A, Aeschlimann D, Paulsson M, Rosa-Pimentel E, Sommarin Y, Wendel M, Oldberg A, Heinegard D 1992 Cartilage matrix proteins: An acidic oligomeric protein (COMP) detected only in cartilage. J Biol Chem 267:6132-6136.
34. Morgelin M, Heinegard D, Engel J, Paulsson M 1992 Electron microscopy of native cartilage oligomeric matrix protein purified from the Swarm rat chondrosarcome reveals a five-armed structure. J Biol Chem 267:6137-6141.
35. Oldberg A, Antonsson P, Lindblom K, Heinegard D 1992 COMP (cartilage oligomeric matrix protein) is structurally related to the thrombospondins. J Biol Chem 267:22346-22350.
36. Jenkins RN, Osborne-Lawrence SL, Sinclair AK, Eddy RL Jr, Byers MG, Shows TB, Duby AD 1990 Structure and chromosomal location of the human gene encoding cartilage matrix protein. J Biol Chem 265:19624-19631.
37. Paulsson M, Heinegard D 1982 Radioimmunoassay of the 148-kilodalton cartilage protein. Biochem J 207:207-213.
38. Hale JE, Fraser JD, Price PA 1988 The identification of matrix Gla protein in cartilage. J Biol Chem 263:5820-5824.
39. Loeser R, Carlson CS, Tulli H, Gray-Jerome W, Miller L, Wallin R 1992 Articular cartilage matrix γ-carboxyglutamic acid containing protein: Characterization and immunolocalization. Biochem J 282:1-6.
40. Hiraki Y, Tanaka H, Inoue H, Kondo J, Kamizono A, Suzuki F 1991 Molecular cloning of a new class of cartilage-specific matrix, chondromodulin-I, which stimulates growth of cultured chondrocytes. Biochem Biophys Res Commun 175:971-977.
41. Heinegard D, Larsson T, Sommarin Y, Franzen A, Paulsson M, Hedbom E 1986 Two novel matrix proteins isolated from articular cartilage show wide distributions among connective tissues. J Biol Chem 261:13866-13872.
42. Oldberg A, Antonsson P, Lindblom K, Heinegard D 1989 A collagen-binding 59-kd protein (fibromodulin) is structurally related to the small interstitial proteoglycans PG-S1 and PG-S2 (decorin). EMBO J 8:2601-2604.
43. Zhao G-Q, Zhou X, Eberspaecher H, Solursh M, de Crombrugghe B 1993 Cartilage homeoprotein 1, a homeoprotein selectively expressed in chondrocytes. Proc Natl Acad Sci USA 90:8633-3637.
44. Kato Y 1995 Differentiation of chondrocyte and control of calcification. J Bone Miner Metabol 13:99-105 (in Japanese).
45. Seyedin SM, Thompson AY, Bentz H, Rosen DM, McPherson JM, Conti A, Siegel NR, Gallupi GR, Piez KA 1986 Cartilage inducing factor-A apparent identity to transforming growth factor-β. J Biol Chem 261:5693-5695.
46. Segarini PR, Rosen DM, Seyedin SM 1989 Binding of transforming growth factor-β to cell surface proteins varies with cell type. Mol Endocrinol 3:261-272.
47. Koenig BB, Cook JS, Wolsing DH, Ting J, Tiesman JP, Correa PE, Olson CA, Pecquet AL, Ventura F, Grant RA, Chen G-X, Wrana JL, Massague J, Rosenbaum JS 1994 Characterization and cloning of a receptor for BMP-2 and BMP-4 from NIH 3T3 cells. Mol Cell Biol 14:5961-5974.
48. Brown CC, Hembry RM, Reynolds JJ 1989 Immunolocalization of metalloproteinases and their inhibitor in the rabbit growth plate. J Bone Joint Surg 71A:580-593.