Rapid PCR-RFLP method for discrimination of imported and domestic mackerel

Marine Biotechnology

Volumn 7, Issue 6, 2005, Pages 571-575

  Aranishi, Futoshi ^a  

^a UNIVERSITY OF MIYAZAKI   (Japan)

Author keywords

5S rDNA nontranscribed spacer; fFood inspection; Imported mackerel; PCR RFLP; Scomber japonicus; Scomber scombrus

Indexed keywords

BIODIVERSITY; DNA; LAWS AND LEGISLATION; MOLECULAR DYNAMICS;

5S RDNA NONTRANSCRIBED SPACER; FOOD INSPECTION; IMPORTED MACKEREL; PCR-RFLP; SCOMBER JACONIBUS; SCOMBER SCOMBRUS;

FISHERIES;

RIBOSOMAL SPACER DNA;

POLYMERASE CHAIN REACTION;

ANIMAL; ARTICLE; COMPARATIVE STUDY; DNA SEQUENCE; FOOD INDUSTRY; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PERCIFORMES; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

ANIMALS; BASE SEQUENCE; DNA, RIBOSOMAL SPACER; FISHERIES; MOLECULAR SEQUENCE DATA; PERCIFORMES; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEQUENCE ANALYSIS, DNA;

SCOMBER; SCOMBER AUSTRALASICUS; SCOMBER JAPONICUS; SCOMBER SCOMBRUS;

EID: 28244458955     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-004-4102-1     Document Type: Article

References (38)

1. Aranishi F, Okimoto T (2004a) Engineered XcmI cassette-containing vector for PCR based phylogenetic analysis. J Genet 83, 33-34
2. Aranishi F, Okimoto T (2004b) PCR-based detection of allergenic mackerel ingredients in seafood. J Genet 83, 193-196
3. Asensio L, Gonzalez I, Fernandez A, Cespedes A, Rodriguez MA, Hernandez PE, Garcia T, Martin R (2001) Identification of Nile perch (Lutes niloticus), grouper (Epinephelus guaza), and wreck fish (Polyprion americanus) fillets by PCR amplification of the 5S rDNA gene. J AOAC Int 84, 777-781
4. Bossier P (1999) Authentication of seafood products by DNA patterns. J Food Sci 64, 189-193
5. Carrera E, Garcia T, Cespedes A, Gonzalez I, Fernandez A, Hernandez PE, Martin R (1999) PCR-RFLP of the mitochondrial cytochrome oxidase gene: a simple method for discrimination between Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss). J Sci Food Agric 79, 1654-1658
6. Cato JC (1998) Seafood Safety - Economics of Hazard Analysis and Critical Control Point (HACCP) Programmes. FAO Fisheries Technical Paper 381 Rome, Italy, FAO
7. Cespedes A, Garcia T, Carrera E, Gonzalez I, Sanz B, Hernandez PE, Martin R (1998) Identification of flat-fish species using polymerase chain reaction (PCR) amplification and restriction analysis of the cytochrome b gene. J Food Sci 63, 206-209
8. Cespedes A, Garcia T, Carrera E, Gonzalez I, Fernandez A, Hernandez PE, Martin R (1999) Identification of sole (Solea solea) and Greenland halibut (Reinhardtius hippoglossoides) by PCR amplification of the 5S rDNA gene. J Agric Food Chem 47, 1046-1050
9. Cespedes A, Garcia T, Carrera E, Gonzalez L, Fernandez A, Asensio L, Hernandez PE, Martin R (2000) Genetic differentiation between sole (Solea solea) and Greenland halibut (Reinhardtius hippoglossoides) by PCR-RFLP analysis of a 12S rRNA gene fragment. J Sci Food Agric 80, 29-32
10. Chow S, Clarke ME, Walsh PJ (1993) PCR-RFLP analysis on thirteen western Atlantic snappers (sub-family Lutjaninae): a simple method for species and stock identification. Fish Bull 30, 207-224
11. Civera T (2003) Species identification and safety of fish products. Vet Res Commun 27, 481-489
12. Cocolin L, D'Agaro E, Manzano M, Lanari D, Comi G (2000) Rapid PCR-RFLP method for the identification of marine fish fillets (seabass, seabream, umbrine, and dentex). J Food Sci 65, 1315-1317
13. Collette BB (2003) Family Scombridae Rafinesque 1815 - mackerels, tunas, and bonitos. In: Annotated Checklists of Fishes, No. 19. (San Francisco: California Academy of Sciences)
14. Davidson WS (1998) PCR techniques. In: Analytical Methods of Food Authentication, Ashurt PR, Dennis MJ, eds. (London, UK: Blackie Academic & Professional) pp 182-203
15. Desrosiers B, Sevigny JM, Chanut JP (1999) Restriction fragment length polymorphism of rDNA in the redfishes Sebastes frasciatus and S. mentella (Scorpaenidae) from the Gulf of St. Lawrence. Can J Zool 77, 267-277
16. Froese R, Pauly D (2000) FishBase 2000 Los Banos, Philippines, ICLARM
17. Hastein T, Hill BJ, Berthe F, Lightner DV (2001) Trace-ability of aquatic animals. Rev Sci Tech 20, 564-583
18. Huss HH (1994) Assurance of Seafood Quality. FAO Fisheries Technical Paper 334. Rome, Italy: FAO
19. JAFIC (2003) Annual Market Reports - Saba 2002, Japan Fisheries Information Service Center Tokyo http://www.jafic.or.jp/market/todayinfo/ nenpo2002/saba2002.htm (in Japanese)
20. Lindstrom DP (1999) Molecular species identification of newly hatched Hawaiian amphidromous gobioid larvae. Mar Biotechnol 1, 167-174
21. Lockley AK, Bardsley RG (2000) DNA-based methods for food authentication. Trends Food Sci Technol 11, 67-77
22. Long EO, David ID (1980) Repeated genes in eukaryotes. Annu Rev Biochem 49, 727-764
23. Mackie IM (1996) Authenticity of fish. In: Food Authentication, Ashurt PR, Dennis MJ, eds. (London, UK.: Blackie Academic & Professional) pp 140-170
24. MAFF (2002). Annual Statistics on Marketing of Fishery Products. Tokyo, Japan: Statistics and Information Department, Ministry of Agriculture, Forestry and Fisheries
25. Martinez I, Friis JT (2004) Application of proteome analysis to seafood authentication. Proteomics 4, 347-354
26. Martins C, Wasko AP, Oliveira C, Wright JM (2000) Nucleotide sequence of 5S rDNA and localization of the ribosomal RNA genes to metaphase chromosomes of the Tilapiine cichlid fish, Oreochromis niloticus. Hereditas 133, 39-46
27. Messias LHV, Ferreira DC, Wasko AP, Oliveira C, Foresti F, Martins C (2003) 5S rDNA organization in the fish Synbranchus marmoratus (Synbranchidae, Synbranchiformes). Hereditas 139, 228-231
28. Pendas AM, Moran P, Freije JP, Garcia-Vazquez E (1994) Chromosomal mapping and nucleotide sequence of two tandem repeats of Atlantic salmon 5S rDNA. Cytogenet Cell Genet 67, 31-36
29. Pendas AM, Moran P, Martinez JE, Garcia-Vazquez E (1995) Applications of 5S rDNA in Atlantic salmon, brown trout, and in Atlantic salmon x brown trout hybrid identification. Mol Ecol 4, 275-276
30. Pope B, Kent HM (1996) High efficiency 5 min transformation of Escherichia coli. Nucleic Acids Res 24, 536-537
31. Quinteiro J, Sotelo CG, Rehbein H, Pryde SE, Perez-Martin RI, Rey-Mendez M, Mackie IM (1998) Use of mtDNA direct polymerase chain reaction (PCR) sequencing and PCR-restriction fragment length polymorphism methodologies in species identification of canned tuna. J Agric Food Chem 46, 1662-1669
32. Russell VJ, Hold GL, Pryde SE, Rehbein H, Quinteiro J, Rey-Mendez M, Sotelo CG, Perez-Martin RI, Santos AT, Rosa C (2000) Use of restriction fragment length polymorphism to distinguish between salmon species. J Agric Food Chem 48, 2184-2188
33. Sajdak SL, Reed KM, Phillips RB (1998) Intrainvididual and interspecies variation in the 5S rDNA of coregonid fish. J Mol Evol 46, 680-688
34. Sebastio P, Zanelli P, Neri TM (2001) Identification of anchovy (Engraulis encrasicholus L.) and gilt sardine (Sardinella aurita) by polymerase chain reaction, sequence of their mitochondrial cytochrome b gene, and restriction analysis of polymerase chain reaction products in semipreserves. J Agric Food Chem 49, 1194-1199
35. Shehadeh Z, Maclean J (1997) Review of the State of World Aquaculture. FAO Fisheries Circular 886, Rev.1 Rome, Italy, FAO
36. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680
37. Vincze T, Posfai J, Roberts RJ (2003) NEBcutter: a program to cleave DNA with restriction enzymes. Nucleic Acids Res 31, 3688-3691
38. Wasko AP, Martins C, Wright JM, Galetti PM Jr (2001) Molecular organization of 5S rDNA in fishes of the genus Brycon. Genome 44, 893-902