-
1
-
-
0019720262
-
Relationship between the primary RNA structure and pulse elongation in vitro by Escherichia coli RNA polymerase. A model
-
Aivazashvili, V. A., R. S. Bibilashvili, R. M. Vartikyan, and T. A. Kutateladze. 1982. Relationship between the primary RNA structure and pulse elongation in vitro by Escherichia coli RNA polymerase. A model. Mol. Biol. 15:711-722.
-
(1982)
Mol. Biol.
, vol.15
, pp. 711-722
-
-
Aivazashvili, V.A.1
Bibilashvili, R.S.2
Vartikyan, R.M.3
Kutateladze, T.A.4
-
2
-
-
0027306799
-
Genetics of eukaryotic RNA polymerases I, II, and III
-
Archambault, J., and J. Friesen. 1993. Genetics of eukaryotic RNA polymerases I, II, and III. Microbiol. Rev. 57:703-724.
-
(1993)
Microbiol. Rev.
, vol.57
, pp. 703-724
-
-
Archambault, J.1
Friesen, J.2
-
3
-
-
0025294195
-
RNA chain elongation by Escherichia coli RNA polymerase. Factors affecting the stability of elongating ternary complexes
-
Arndt, K. M., and M. J. Chamberlin. 1990. RNA chain elongation by Escherichia coli RNA polymerase. Factors affecting the stability of elongating ternary complexes. J. Mol. Biol. 213:79-108.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 79-108
-
-
Arndt, K.M.1
Chamberlin, M.J.2
-
5
-
-
0031551578
-
Two conformations of RNA polymerase II revealed by electron crystallography
-
Asturias, F., G. Meredith, C. Poglitsch, and R. Kornberg. 1997. Two conformations of RNA polymerase II revealed by electron crystallography. J. Mol. Biol. 272:536-540.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 536-540
-
-
Asturias, F.1
Meredith, G.2
Poglitsch, C.3
Kornberg, R.4
-
6
-
-
0025299871
-
Structural studies on the active site of Escherichia coli RNA polymerase. 2. Geometrical relationship of the interacting substrates
-
Beal, R., R. Pillai, P. Chuknyisky, A. Levy, E. Tarien, and G. Eichhorn. 1990. Structural studies on the active site of Escherichia coli RNA polymerase. 2. Geometrical relationship of the interacting substrates. Biochemistry 29:5994-6002.
-
(1990)
Biochemistry
, vol.29
, pp. 5994-6002
-
-
Beal, R.1
Pillai, R.2
Chuknyisky, P.3
Levy, A.4
Tarien, E.5
Eichhorn, G.6
-
7
-
-
0026317447
-
Mapping of a contact for the RNA 3′ terminus in the largest subunit of RNA polymerase
-
Borukhov, S., J. Lee, and A. Goldfarb. 1991. Mapping of a contact for the RNA 3′ terminus in the largest subunit of RNA polymerase. J. Biol. Chem. 266:23932-23935.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 23932-23935
-
-
Borukhov, S.1
Lee, J.2
Goldfarb, A.3
-
8
-
-
0027536870
-
Transcript cleavage factors from E. coli
-
Borukhov, S., V. Sagitov, and A. Goldfarb. 1993. Transcript cleavage factors from E. coli. Cell 72:459-466.
-
(1993)
Cell
, vol.72
, pp. 459-466
-
-
Borukhov, S.1
Sagitov, V.2
Goldfarb, A.3
-
9
-
-
0027486256
-
Two modes of transcription initiation in vitro at the rrnB P1 promoter of Escherichia coli
-
Borukhov, S., V. Sagitov, C. A. Josaitis, R. L. Gourse and A. Goldfarb. 1993. Two modes of transcription initiation in vitro at the rrnB P1 promoter of Escherichia coli. J. Biol. Chem. 268:23477-23482.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 23477-23482
-
-
Borukhov, S.1
Sagitov, V.2
Josaitis, C.A.3
Gourse, R.L.4
Goldfarb, A.5
-
10
-
-
0023645844
-
Tau factor from Escherichia coli mediates accurate and efficient termination of transcription at the bacteriophage T3 early termination site in vitro
-
Briat, J. F., G. Bollag, C. A. Kearney, I. Molineux, and M. J. Chamberlin. 1987. Tau factor from Escherichia coli mediates accurate and efficient termination of transcription at the bacteriophage T3 early termination site in vitro. J. Mol. Biol. 198:43-49.
-
(1987)
J. Mol. Biol.
, vol.198
, pp. 43-49
-
-
Briat, J.F.1
Bollag, G.2
Kearney, C.A.3
Molineux, I.4
Chamberlin, M.J.5
-
11
-
-
0003174053
-
The stringent response
-
F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), ASM Press, Washington, D.C.
-
Cashel, M., G. DR, H. VJ and V. D. 1996. The stringent response, p. 1458-1496. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
-
(1996)
Escherichia Coli and Salmonella Cellular and Molecular Biology, 2nd Ed.
, pp. 1458-1496
-
-
Cashel, M.1
Dr, G.2
Vj, H.3
D., V.4
-
12
-
-
0001796834
-
RNA polymerase - An overview
-
R. Losick and M. Chamberlin (ed.), Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
Chamberlin, M. 1976. RNA polymerase - an overview, p. 17-68. In R. Losick and M. Chamberlin (ed.), RNA polymerase. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
(1976)
RNA Polymerase
, pp. 17-68
-
-
Chamberlin, M.1
-
13
-
-
0004039871
-
RNA chain initiation and promoter clearance by E. coli RNA polymerase
-
E. C. C. Lin and A. S. Lynch (ed.), R. G. Landes Co., Austin, Tex.
-
Chamberlin, M., and L. Hsu. 1996. RNA chain initiation and promoter clearance by E. coli RNA polymerase, p. 7-25. In E. C. C. Lin and A. S. Lynch (ed.), Regulation of gene expression in E. coli. R. G. Landes Co., Austin, Tex.
-
(1996)
Regulation of Gene Expression in E. Coli
, pp. 7-25
-
-
Chamberlin, M.1
Hsu, L.2
-
14
-
-
0027106595
-
New models for the mechanism of transcription elongation and its regulation
-
Wiley-Liss, New York, N.Y.
-
Chamberlin, M. J. 1995. New models for the mechanism of transcription elongation and its regulation, p. 1-21. The Harvey lectures. Wiley-Liss, New York, N.Y.
-
(1995)
The Harvey Lectures
, pp. 1-21
-
-
Chamberlin, M.J.1
-
15
-
-
0031585988
-
Effects of neutral salts of transcript elongation and pausing suggest the his leader pause RNA hairpin interacts with an easily disordered region of RNA polymerase
-
Chan, C., and R. Landick. 1997. Effects of neutral salts of transcript elongation and pausing suggest the his leader pause RNA hairpin interacts with an easily disordered region of RNA polymerase. J. Mol. Biol. 268:37-53.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 37-53
-
-
Chan, C.1
Landick, R.2
-
16
-
-
0031585994
-
Spacing from the transcript 3′ end determines whether a nascent RNA hairpin interacts with RNA polymerase to prolong pausing or triggers termination
-
Chan, C., D. Wang, and R. Landick. 1997. Spacing from the transcript 3′ end determines whether a nascent RNA hairpin interacts with RNA polymerase to prolong pausing or triggers termination. J. Mol. Biol. 268:54-68.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 54-68
-
-
Chan, C.1
Wang, D.2
Landick, R.3
-
17
-
-
0027374650
-
Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin
-
Chan, C. L., and R. Landick. 1993. Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin. J. Mol. Biol. 233:25-42.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 25-42
-
-
Chan, C.L.1
Landick, R.2
-
18
-
-
0000669319
-
New perspectives on RNA chain elongation and termination by E. coli RNA polymerase
-
R. C. Conaway and J. W. Conaway (ed.), Raven Press, New York, N.Y.
-
Chan, C. L., and R. Landick. 1994. New perspectives on RNA chain elongation and termination by E. coli RNA polymerase, p. 297-321. In R. C. Conaway and J. W. Conaway (ed.), Transcription: mechanisms and regulation. Raven Press, New York, N.Y.
-
(1994)
Transcription: Mechanisms and Regulation
, pp. 297-321
-
-
Chan, C.L.1
Landick, R.2
-
19
-
-
0026332799
-
Functional importance of sequence in the stem-loop of a transcription terminator
-
Cheng, S.-W., E. C. Lynch, K. R. Leason, D. L. Court, B. A. Shapiro, and D. I. Friedman. 1992. Functional importance of sequence in the stem-loop of a transcription terminator. Science 254:1205-1207.
-
(1992)
Science
, vol.254
, pp. 1205-1207
-
-
Cheng, S.-W.1
Lynch, E.C.2
Leason, K.R.3
Court, D.L.4
Shapiro, B.A.5
Friedman, D.I.6
-
20
-
-
0029022188
-
A zinc-binding region in the beta′ subunit of RNA polymerase is involved in antitermination of early transcription of phage HK022
-
Clerget, M., D. J. Jin, and R. A. Weisberg. 1995. A zinc-binding region in the beta′ subunit of RNA polymerase is involved in antitermination of early transcription of phage HK022. J. Mol. Biol. 248:768-780.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 768-780
-
-
Clerget, M.1
Jin, D.J.2
Weisberg, R.A.3
-
21
-
-
0025832171
-
Three-dimensional structure of yeast RNA polymerase II at 16 Å resolution
-
Darst, S. A., A. M. Edwards, E. W. Kubalek, and R. D. Kornberg. 1991. Three-dimensional structure of yeast RNA polymerase II at 16 Å resolution. Cell 66:121-128.
-
(1991)
Cell
, vol.66
, pp. 121-128
-
-
Darst, S.A.1
Edwards, A.M.2
Kubalek, E.W.3
Kornberg, R.D.4
-
22
-
-
0024342908
-
Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography
-
Darst, S. A., E. W. Kubalek, and R. D. Kornberg. 1989. Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography. Nature 340:730-732.
-
(1989)
Nature
, vol.340
, pp. 730-732
-
-
Darst, S.A.1
Kubalek, E.W.2
Kornberg, R.D.3
-
23
-
-
0027321585
-
Control of transcription termination by RNA-binding proteins
-
Das, A. 1993. Control of transcription termination by RNA-binding proteins. Annu. Rev. Biochem. 62:893-930.
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 893-930
-
-
Das, A.1
-
24
-
-
0025663103
-
Prediction of Rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures
-
d'Aubenton Carafa, Y., E. Brody and C. Thermes. 1990. Prediction of Rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures. J. Mol. Biol. 216:835-858.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 835-858
-
-
D'Aubenton Carafa, Y.1
Brody, E.2
Thermes, C.3
-
25
-
-
0031779081
-
RNA polymerase promoter interactions: The comings and goings of RNA polymerase
-
deHaseth, P., M. Zupanic, and M. Record, Jr. 1998. RNA polymerase promoter interactions: the comings and goings of RNA polymerase. J. Bacteriol. 180:3019-3025.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 3019-3025
-
-
DeHaseth, P.1
Zupanic, M.2
Record Jr., M.3
-
26
-
-
0029094575
-
Open complex formation by Escherichia coli RNA polymerase: The mechanism of polymerase-induced strand separation of double helical DNA
-
deHaseth, P. L., and J. D. Helmann. 1995. Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase-induced strand separation of double helical DNA. Mol. Microbiol. 16:817-824.
-
(1995)
Mol. Microbiol.
, vol.16
, pp. 817-824
-
-
DeHaseth, P.L.1
Helmann, J.D.2
-
27
-
-
0029157035
-
A universally conserved region of the largest subunit participates in the active site of RNA polymerase III
-
Dieci, G., S. Hermann-Le Denmat, E. Lukhtanov, P. Thuriaux, M. Werner, and A. Sentenac. 1995. A universally conserved region of the largest subunit participates in the active site of RNA polymerase III. EMBO J. 14:3766-3776.
-
(1995)
EMBO J.
, vol.14
, pp. 3766-3776
-
-
Dieci, G.1
Hermann-Le Denmat, S.2
Lukhtanov, E.3
Thuriaux, P.4
Werner, M.5
Sentenac, A.6
-
28
-
-
0028229547
-
Nucleotide-specific transcriptional pausing in the pyrBI leader region of Escherichia coli K-12
-
Donahue, J. P., and C. L. Turnbough, Jr. 1994. Nucleotide-specific transcriptional pausing in the pyrBI leader region of Escherichia coli K-12. J. Biol. Chem. 269:18185-18191.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18185-18191
-
-
Donahue, J.P.1
Turnbough Jr., C.L.2
-
29
-
-
0028146760
-
A structural model for fidelity in transcription
-
Eichhorn, G., P. Chuknyisky, J. Butzow, R. Beal, C. Garland, C. Janzen, P. Clark, and E. Tarien, 1994. A structural model for fidelity in transcription. Proc. Natl. Acad. Sci. USA 91:7613-7617.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 7613-7617
-
-
Eichhorn, G.1
Chuknyisky, P.2
Butzow, J.3
Beal, R.4
Garland, C.5
Janzen, C.6
Clark, P.7
Tarien, E.8
-
30
-
-
0026728955
-
The single-nucleotide addition cycle in transcription: A biophysical and biochemical perspective
-
Erie, D. A., T. D. Yager, and P. H. von Hippel. 1992. The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective. Annu. Rev. Biophys. Biomol. Struct. 21:379-415.
-
(1992)
Annu. Rev. Biophys. Biomol. Struct.
, vol.21
, pp. 379-415
-
-
Erie, D.A.1
Yager, T.D.2
Von Hippel, P.H.3
-
31
-
-
0018868661
-
A model for transcription termination suggested by studies on the trp attenuator in vitro using base analogs
-
Farnham, P. J., and T. Platt. 1980. A model for transcription termination suggested by studies on the trp attenuator in vitro using base analogs. Cell 20:739-748.
-
(1980)
Cell
, vol.20
, pp. 739-748
-
-
Farnham, P.J.1
Platt, T.2
-
32
-
-
0027930269
-
GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure
-
Feng, G., D. N. Lee, D. Wang, C. L. Chan, and R. Landick. 1994. GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure. J. Biol. Chem. 269:22282-22294.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 22282-22294
-
-
Feng, G.1
Lee, D.N.2
Wang, D.3
Chan, C.L.4
Landick, R.5
-
33
-
-
0031443321
-
Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria
-
Gaal, T., M. Bartlett, W. Ross, C. Turnbough, Jr., and R. Course. 1997. Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria. Science 278:2092-2097.
-
(1997)
Science
, vol.278
, pp. 2092-2097
-
-
Gaal, T.1
Bartlett, M.2
Ross, W.3
Turnbough Jr., C.4
Course, R.5
-
34
-
-
0032478549
-
RNA polymerase as a molecular motor
-
Gelles, J., and R. Landick. 1998. RNA polymerase as a molecular motor. Cell 93:13-16.
-
(1998)
Cell
, vol.93
, pp. 13-16
-
-
Gelles, J.1
Landick, R.2
-
36
-
-
0000776061
-
Bacterial sigma factors
-
S. McKnight and K. Yamamoto (ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Gross, C., M. Lonetto, and R. Losick. 1996. Bacterial sigma factors, p. 129-176. In S. McKnight and K. Yamamoto (ed.), Transcriptional regulation. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1996)
Transcriptional Regulation
, pp. 129-176
-
-
Gross, C.1
Lonetto, M.2
Losick, R.3
-
37
-
-
0029957789
-
Increased accommodation of nascent RNA in a product site on RNA polymerase II during arrest
-
Gu, W., M. Wind, and D. Reines. 1996. Increased accommodation of nascent RNA in a product site on RNA polymerase II during arrest. Proc. Natl. Acad. Sci. USA 93:6935-6940.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 6935-6940
-
-
Gu, W.1
Wind, M.2
Reines, D.3
-
38
-
-
0031561795
-
A model for the mechanism of polymerase translocation
-
Guajardo, R., and R. Sousa. 1997. A model for the mechanism of polymerase translocation. J. Mol. Biol. 265:8-19.
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 8-19
-
-
Guajardo, R.1
Sousa, R.2
-
39
-
-
0345394597
-
Topography of transcription: Path of the leading end of nascent RNA through the Escherichia coli transcription complex
-
Hanna, M. M., and C. F. Meares. 1983. Topography of transcription: path of the leading end of nascent RNA through the Escherichia coli transcription complex. Proc. Natl. Acad. Sci. USA 80:4238-4242.
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 4238-4242
-
-
Hanna, M.M.1
Meares, C.F.2
-
40
-
-
0027486228
-
Four contiguous amino acids in the β subunit of Escherichia coli RNA polymerase define the target for streptolydigin resistance
-
Heisler, L. M., H. Suzuki, R. Landick, and C. A. Gross. 1993. Four contiguous amino acids in the β subunit of Escherichia coli RNA polymerase define the target for streptolydigin resistance. J. Biol. Chem. 268:25369-25375.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 25369-25375
-
-
Heisler, L.M.1
Suzuki, H.2
Landick, R.3
Gross, C.A.4
-
41
-
-
85088669218
-
Turing machines
-
Hopcroft, J. 1985. Turing machines. Sci. Am. 52:86-98.
-
(1985)
Sci. Am.
, vol.52
, pp. 86-98
-
-
Hopcroft, J.1
-
42
-
-
0029614716
-
Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro
-
Hsu, L., N. Vo, and M. Chamberlin. 1995. Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro. Proc. Natl. Acad. Sci. USA 92:11588-11592.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 11588-11592
-
-
Hsu, L.1
Vo, N.2
Chamberlin, M.3
-
43
-
-
0023749808
-
Mapping and sequencing of mutations in the Escherichia coli rpoB gene that lead to rifampicin resistance
-
Jin, D. J., and C. Gross. 1988. Mapping and sequencing of mutations in the Escherichia coli rpoB gene that lead to rifampicin resistance. J. Mol. Biol. 202:45-58.
-
(1988)
J. Mol. Biol.
, vol.202
, pp. 45-58
-
-
Jin, D.J.1
Gross, C.2
-
44
-
-
0023721705
-
Characterization of the termination phenotypes of rifampicin-resistant mutants
-
Jin, D. J., W. A. Walter, and C. A. Gross. 1988. Characterization of the termination phenotypes of rifampicin-resistant mutants. J. Mol. Biol. 202:245-253.
-
(1988)
J. Mol. Biol.
, vol.202
, pp. 245-253
-
-
Jin, D.J.1
Walter, W.A.2
Gross, C.A.3
-
45
-
-
0024557468
-
Analysis of the gene encoding the largest subunit of RNA polymerase II in Drosophila
-
Jokerst, R. S., J. R. Weeks, W. A. Zehring, and A. L. Greenleaf. 1989. Analysis of the gene encoding the largest subunit of RNA polymerase II in Drosophila. Mol. Gen. Genet. 215:266-275.
-
(1989)
Mol. Gen. Genet.
, vol.215
, pp. 266-275
-
-
Jokerst, R.S.1
Weeks, J.R.2
Zehring, W.A.3
Greenleaf, A.L.4
-
46
-
-
0028881713
-
Polymerase structures and function: Variations on a theme?
-
Joyce, C., and T. Steitz. 1996. Polymerase structures and function: variations on a theme? J. Bacteriol. 177:6321-6329.
-
(1996)
J. Bacteriol.
, vol.177
, pp. 6321-6329
-
-
Joyce, C.1
Steitz, T.2
-
47
-
-
0026535863
-
Structure of transcription elongation complexes in vivo
-
Kainz, M., and J. Roberts. 1992. Structure of transcription elongation complexes in vivo. Science 255:838-841.
-
(1992)
Science
, vol.255
, pp. 838-841
-
-
Kainz, M.1
Roberts, J.2
-
48
-
-
0030730281
-
Trajectory of DNA in the RNA polymerase II transcription preinitiation complex
-
Kim, T.-K., T. Lagrange, Y.-H. Wang, J. Griffith, D. Reinberg, and R. Ebright. 1997. Trajectory of DNA in the RNA polymerase II transcription preinitiation complex. Proc. Natl. Acad. Sci. USA 94:12268-12273.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 12268-12273
-
-
Kim, T.-K.1
Lagrange, T.2
Wang, Y.-H.3
Griffith, J.4
Reinberg, D.5
Ebright, R.6
-
49
-
-
0031059249
-
Arrest of transcription: E. coli RNA polymerase translocates backward leaving the 3′ end of the RNA intact and extruded
-
Komissarova, N., and M. Kashlev. 1997. Arrest of transcription: E. coli RNA polymerase translocates backward leaving the 3′ end of the RNA intact and extruded. Proc. Natl. Acad. Sci. USA 94:1755-1760.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1755-1760
-
-
Komissarova, N.1
Kashlev, M.2
-
50
-
-
0030950638
-
RNA polymerase switches between inactivated and activated states by translocating back and forth along the DNA and the RNA
-
Komissarova, N., and M. Kashlev. 1997. RNA polymerase switches between inactivated and activated states by translocating back and forth along the DNA and the RNA. J. Biol. Chem. 272:15329-15338.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 15329-15338
-
-
Komissarova, N.1
Kashlev, M.2
-
51
-
-
0026717535
-
Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp
-
Kong, X.-P., R. Onrust, M. O'Donnell, and J. Kuriyan. 1992. Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell 69:425-437.
-
(1992)
Cell
, vol.69
, pp. 425-437
-
-
Kong, X.-P.1
Onrust, R.2
O'Donnell, M.3
Kuriyan, J.4
-
52
-
-
0028618183
-
Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
-
Krishna, T., X. Kong, S. Gary, P. Burgers, and J. Kuriyan. 1994. Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA. Cell 79:1233-1243.
-
(1994)
Cell
, vol.79
, pp. 1233-1243
-
-
Krishna, T.1
Kong, X.2
Gary, S.3
Burgers, P.4
Kuriyan, J.5
-
53
-
-
0026708877
-
Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Individual complexes halted along different transcription units have distinct and unexpected bioChemical properties
-
Krummel, B., and M. J. Chamberlin. 1992. Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Individual complexes halted along different transcription units have distinct and unexpected bioChemical properties. J. Mol. Biol. 225:221-237.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 221-237
-
-
Krummel, B.1
Chamberlin, M.J.2
-
54
-
-
0030969278
-
RNA polymerase slides home: Pause and termination site recognition
-
Landick, R. 1997. RNA polymerase slides home: pause and termination site recognition. Cell 88:741-744.
-
(1997)
Cell
, vol.88
, pp. 741-744
-
-
Landick, R.1
-
55
-
-
0022392670
-
Translation activates the paused transcription complex and restores transcription of the trp operon leader region
-
Landick, R., J. Carey, and C. Yanofsky. 1985. Translation activates the paused transcription complex and restores transcription of the trp operon leader region. Proc. Natl. Acad. Sci. USA 82:4663-4667.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 4663-4667
-
-
Landick, R.1
Carey, J.2
Yanofsky, C.3
-
56
-
-
0029798713
-
The shrewd grasp of RNA polymerase
-
Landick, R., and J. Roberts. 1996. The shrewd grasp of RNA polymerase. Science 273:202-203.
-
(1996)
Science
, vol.273
, pp. 202-203
-
-
Landick, R.1
Roberts, J.2
-
57
-
-
0025062984
-
Amino acid changes in conserved regions of the β-subunit of Escherichia coli RNA polymerase alter transcription pausing and termination
-
Landick, R., J. Stewart, and D. Lee. 1990. Amino acid changes in conserved regions of the β-subunit of Escherichia coli RNA polymerase alter transcription pausing and termination. Genes Dev. 4:1623-1636.
-
(1990)
Genes Dev.
, vol.4
, pp. 1623-1636
-
-
Landick, R.1
Stewart, J.2
Lee, D.3
-
58
-
-
0001562527
-
Transcription attenuation
-
F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), ASM Press, Washington, D.C.
-
Landick, R., C. Turnbough, Jr., and C. Yanofsky. 1996. Transcription attenuation, p. 1263-1286. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed.
, pp. 1263-1286
-
-
Landick, R.1
Turnbough Jr., C.2
Yanofsky, C.3
-
59
-
-
0023660755
-
Isolation and structural analysis of the Escherichia coli trp leader paused transcription complex
-
Landick, R., and C. Yanofsky. 1987. Isolation and structural analysis of the Escherichia coli trp leader paused transcription complex. J. Mol. Biol. 196:363-377.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 363-377
-
-
Landick, R.1
Yanofsky, C.2
-
60
-
-
0027978145
-
GreA-induced transcript cleavage is accompanied by reverse translocation to a different transcription complex conformation
-
Lee, D. N., G. Feng, and R. Landick. 1994. GreA-induced transcript cleavage is accompanied by reverse translocation to a different transcription complex conformation. J. Biol. Chem. 269:22295-22303.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 22295-22303
-
-
Lee, D.N.1
Feng, G.2
Landick, R.3
-
61
-
-
0027104296
-
Structure of RNA and DNA chains in paused transcription complexes containing Escherichia coli RNA polymerase
-
Lee, D. N., and R. Landick. 1992. Structure of RNA and DNA chains in paused transcription complexes containing Escherichia coli RNA polymerase. J. Mol. Biol. 228:759-777.
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 759-777
-
-
Lee, D.N.1
Landick, R.2
-
62
-
-
0025031912
-
Transcription pausing by Escherichia coli RNA polymerase is modulated by downstream DNA sequences
-
Lee, D. N., L. Phung, J. Stewart, and R. Landick. 1990. Transcription pausing by Escherichia coli RNA polymerase is modulated by downstream DNA sequences. J. Biol. Chem. 265:15145-15153.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 15145-15153
-
-
Lee, D.N.1
Phung, L.2
Stewart, J.3
Landick, R.4
-
63
-
-
0030890936
-
Changing the mechanism of transcriptional activation by phage lambda repressor
-
Li, M., W. R. McClure, and M. M. Susskind. 1997. Changing the mechanism of transcriptional activation by phage lambda repressor. Proc. Natl. Acad. Sci. USA 94:3691-3696.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 3691-3696
-
-
Li, M.1
McClure, W.R.2
Susskind, M.M.3
-
64
-
-
0028027955
-
Regulation of pyrBI operon expression in Escherichia coli by UTP-sensitive reiterative RNA synthesis during transcriptional initiation
-
Liu, C., L. Heath, and C. Turnbough, Jr. 1994. Regulation of pyrBI operon expression in Escherichia coli by UTP-sensitive reiterative RNA synthesis during transcriptional initiation. Genes Dev. 8:2904-2912.
-
(1994)
Genes Dev.
, vol.8
, pp. 2904-2912
-
-
Liu, C.1
Heath, L.2
Turnbough Jr., C.3
-
65
-
-
0028301062
-
Effects of transcriptional start site sequence and position on nucleotide-sensitive selection of alternative start sites at the pyrC promoter in Escherichia coli
-
Liu, J., and C. L. Turnbough, Jr. 1994. Effects of transcriptional start site sequence and position on nucleotide-sensitive selection of alternative start sites at the pyrC promoter in Escherichia coli. J. Bacteriol. 176:2938-2945.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2938-2945
-
-
Liu, J.1
Turnbough Jr., C.L.2
-
66
-
-
0028932769
-
NusA contacts nascent RNA in Escherichia coli transcription complexes
-
Liu, K., and M. M. Hanna. 1995. NusA contacts nascent RNA in Escherichia coli transcription complexes. J. Mol. Biol. 247:547-558.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 547-558
-
-
Liu, K.1
Hanna, M.M.2
-
67
-
-
0029043983
-
NusA interferes with interactions between the nascent RNA and the C-terminal domain of the alpha subunit of RNA polymerase in Escherichia coli transcription complexes
-
Liu, K., and M. M. Hanna. 1995. NusA interferes with interactions between the nascent RNA and the C-terminal domain of the alpha subunit of RNA polymerase in Escherichia coli transcription complexes. Proc. Natl. Acad. Sci. USA 92:5012-5016.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 5012-5016
-
-
Liu, K.1
Hanna, M.M.2
-
68
-
-
0030053898
-
Role of Escherichia coli RNA polymerase alpha subunit in modulation of pausing, termination and anti-termination by the transcription elongation factor NusA
-
Liu, K., Y. Zhang, K. Severinov, A. Das, and M. M. Hanna. 1996. Role of Escherichia coli RNA polymerase alpha subunit in modulation of pausing, termination and anti-termination by the transcription elongation factor NusA. EMBO J. 15:150-161.
-
(1996)
EMBO J.
, vol.15
, pp. 150-161
-
-
Liu, K.1
Zhang, Y.2
Severinov, K.3
Das, A.4
Hanna, M.M.5
-
69
-
-
0029983157
-
Protein-RNA interactions in the active center of the transcription elongation complex
-
Markovtsov, V., A. Mustaev, and A. Goldfarb. 1996. Protein-RNA interactions in the active center of the transcription elongation complex. Proc. Natl. Acad. Sci. USA 93:3221-3226.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 3221-3226
-
-
Markovtsov, V.1
Mustaev, A.2
Goldfarb, A.3
-
70
-
-
0025341582
-
A mechanism of formation of a persistent hybrid between elongation RNA and template DNA
-
Masukata, H., and J. Tomizawa. 1990. A mechanism of formation of a persistent hybrid between elongation RNA and template DNA. Cell 62:331-338.
-
(1990)
Cell
, vol.62
, pp. 331-338
-
-
Masukata, H.1
Tomizawa, J.2
-
71
-
-
0021891874
-
Mechanism and control of transcription initiation in prokaryotes
-
McClure, W. R. 1985. Mechanism and control of transcription initiation in prokaryotes. Annu. Rev. Biochem. 54:171-204.
-
(1985)
Annu. Rev. Biochem.
, vol.54
, pp. 171-204
-
-
McClure, W.R.1
-
72
-
-
0018239472
-
On the mechanism of rifampicin inhibition of RNA synthesis
-
McClure, W. R., and C. L. Cech. 1978. On the mechanism of rifampicin inhibition of RNA synthesis. J. Biol. Chem. 253:8949-8956.
-
(1978)
J. Biol. Chem.
, vol.253
, pp. 8949-8956
-
-
McClure, W.R.1
Cech, C.L.2
-
73
-
-
0028020630
-
Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate
-
McDowell, J. C., J. W. Roberts, D. J. Jin, and C. Gross. 1994. Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate. Science 266:822-825.
-
(1994)
Science
, vol.266
, pp. 822-825
-
-
McDowell, J.C.1
Roberts, J.W.2
Jin, D.J.3
Gross, C.4
-
74
-
-
0030069874
-
Activation and repression of transcription at two different phage phi29 promoters are mediated by interaction of the same residues of regulatory protein p4 with RNA polymerase
-
Monsalve, M., M. Mencia, F. Rojo, and M. Salas. 1996. Activation and repression of transcription at two different phage phi29 promoters are mediated by interaction of the same residues of regulatory protein p4 with RNA polymerase. EMBO J. 15:383-391.
-
(1996)
EMBO J.
, vol.15
, pp. 383-391
-
-
Monsalve, M.1
Mencia, M.2
Rojo, F.3
Salas, M.4
-
75
-
-
0026315797
-
Mapping of the priming substrate contacts in the active center of Escherichia coli RNA polymerase
-
Mustaev, A., M. Kashlev, J. Y. Lee, A. Polyakov, A. Lebedev, K. Zalenskaya, M. Gracbev, A. Goldfarb, and V. Nikiforov. 1991. Mapping of the priming substrate contacts in the active center of Escherichia coli RNA polymerase. J. Biol. Chem. 266:23927-23931.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 23927-23931
-
-
Mustaev, A.1
Kashlev, M.2
Lee, J.Y.3
Polyakov, A.4
Lebedev, A.5
Zalenskaya, K.6
Gracbev, M.7
Goldfarb, A.8
Nikiforov, V.9
-
76
-
-
0027203950
-
Active center rearrangement in RNA polymerase initiation complex
-
Mustaev, A., M. Kashlev, E. Zaychikov, M. Grachev, and A. Goldfarb. 1993. Active center rearrangement in RNA polymerase initiation complex. J. Biol. Chem. 26:19185-19187.
-
(1993)
J. Biol. Chem.
, vol.26
, pp. 19185-19187
-
-
Mustaev, A.1
Kashlev, M.2
Zaychikov, E.3
Grachev, M.4
Goldfarb, A.5
-
77
-
-
0030917007
-
Modular organization of the catalytic center of RNA polymerase
-
Mustaev, A., M. Kozlov, V. Markovtsov, E. Zaychikov, L. Denissova, and A. Goldfarb. 1997. Modular organization of the catalytic center of RNA polymerase. Proc. Natl. Acad. Sci. USA 94:6641-6645.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6641-6645
-
-
Mustaev, A.1
Kozlov, M.2
Markovtsov, V.3
Zaychikov, E.4
Denissova, L.5
Goldfarb, A.6
-
78
-
-
0028020497
-
Topology of the RNA polymerase active center probed by chimeric rifampicin-nucleotide compounds
-
Mustaev, A., E. Zaychikov, K. Severinov, M. Kashlev, A. Polyakov, V. Nikiforov, and A. Goldfarb. 1994. Topology of the RNA polymerase active center probed by chimeric rifampicin-nucleotide compounds. Proc. Natl. Acad. Sci. USA 91:12036-12040.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 12036-12040
-
-
Mustaev, A.1
Zaychikov, E.2
Severinov, K.3
Kashlev, M.4
Polyakov, A.5
Nikiforov, V.6
Goldfarb, A.7
-
79
-
-
0029818631
-
Transcription processivity: RNA polymerase-DNA interactions holding together the elongation complex
-
Nudler, E., E. Avetissova, V. Markovstov, and A. Goldfarb. 1996. Transcription processivity: RNA polymerase-DNA interactions holding together the elongation complex. Science 273:211-217.
-
(1996)
Science
, vol.273
, pp. 211-217
-
-
Nudler, E.1
Avetissova, E.2
Markovstov, V.3
Goldfarb, A.4
-
80
-
-
0028066790
-
Discontinuous mechanism of transcription elongation
-
Nudler, E., A. Goldfarb, and M. Kashlev. 1994. Discontinuous mechanism of transcription elongation. Science 265:793-796.
-
(1994)
Science
, vol.265
, pp. 793-796
-
-
Nudler, E.1
Goldfarb, A.2
Kashlev, M.3
-
81
-
-
0029066765
-
Coupling between transcription termination and RNA polymerase inchworming
-
Nudler, E., M. Kashlev, V. Nikiforov, and A. Goldfarb. 1995. Coupling between transcription termination and RNA polymerase inchworming. Cell 81:351-357.
-
(1995)
Cell
, vol.81
, pp. 351-357
-
-
Nudler, E.1
Kashlev, M.2
Nikiforov, V.3
Goldfarb, A.4
-
82
-
-
0031552174
-
The RNA: DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase
-
Nudler, E., A. Mustaev, E. Lukhtanov, and A. Goldfarb. 1997 The RNA: DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase. Cell 89:33-41.
-
(1997)
Cell
, vol.89
, pp. 33-41
-
-
Nudler, E.1
Mustaev, A.2
Lukhtanov, E.3
Goldfarb, A.4
-
83
-
-
0029015817
-
Intrinsic transcript cleavage activity of RNA polymerase
-
Orlova, M., J. Newlands, A. Das, A. Goldfarb, and S. Borukhov. 1995. Intrinsic transcript cleavage activity of RNA polymerase. Proc. Natl. Acad. Sci. USA 92:4596-4600.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 4596-4600
-
-
Orlova, M.1
Newlands, J.2
Das, A.3
Goldfarb, A.4
Borukhov, S.5
-
84
-
-
0028223611
-
Rho and RNA: Models for recognition and response
-
Platt, T. 1994. Rho and RNA: models for recognition and response. Mol. Microbiol. 11:983-990.
-
(1994)
Mol. Microbiol.
, vol.11
, pp. 983-990
-
-
Platt, T.1
-
85
-
-
0002605733
-
RNA structure in transcription elongation, termination, and antitermination
-
R. Simons and M. Grunberg (ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Platt, T. 1997. RNA structure in transcription elongation, termination, and antitermination, p. 541-574. In R. Simons and M. Grunberg (ed.), RNA structure and function. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1997)
RNA Structure and Function
, pp. 541-574
-
-
Platt, T.1
-
86
-
-
0028875725
-
Three-dimensional structure of E. coli core RNA polymerase: Promoter binding and elongation conformations of the enzyme
-
Polyakov, A., E. Severinova, and S. Darst. 1995. Three-dimensional structure of E. coli core RNA polymerase: promoter binding and elongation conformations of the enzyme. Cell 83:365-373.
-
(1995)
Cell
, vol.83
, pp. 365-373
-
-
Polyakov, A.1
Severinova, E.2
Darst, S.3
-
87
-
-
0001416657
-
70), promoters, and the kinetics of the steps of transcription initiation
-
F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), ASM Press, Washington, D.C.
-
70), promoters, and the kinetics of the steps of transcription initiation, p. 792-821. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed.
, pp. 792-821
-
-
Record Jr., M.1
Reznikoff, W.2
Craig, M.3
McQuade, K.4
Schlax, P.5
-
88
-
-
0030584091
-
Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism
-
Reeder, T., and D. Hawley. 1996. Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism. Cell 87:767-777.
-
(1996)
Cell
, vol.87
, pp. 767-777
-
-
Reeder, T.1
Hawley, D.2
-
89
-
-
0026566314
-
Parameters affecting transcription termination by Escherichia coli RNA polymerase. Analysis of 13 rho-independent terminators
-
Reynolds, R., R. M. Bermúdez-Cruz, and M. J. Chamberlin. 1992. Parameters affecting transcription termination by Escherichia coli RNA polymerase. Analysis of 13 rho-independent terminators. J. Mol. Biol. 224:31-51.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 31-51
-
-
Reynolds, R.1
Bermúdez-Cruz, R.M.2
Chamberlin, M.J.3
-
90
-
-
0026544876
-
Parameters affecting transcription termination by Escherichia coli RNA polymerase. II. Construction and analysis of hybrid terminators
-
Reynolds, R., and M. J. Chamberlin. 1992. Parameters affecting transcription termination by Escherichia coli RNA polymerase. II. Construction and analysis of hybrid terminators. J. Mol. Biol. 224:53-63.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 53-63
-
-
Reynolds, R.1
Chamberlin, M.J.2
-
91
-
-
0025852478
-
Footprinting analysis of mammalian RNA polymerase II along its transcript as an alternate view of transcription elongation
-
Rice, G., C. Kane, and M. Chamberlin. 1991. Footprinting analysis of mammalian RNA polymerase II along its transcript as an alternate view of transcription elongation. Proc. Natl. Acad. Sci. USA 88:1245-1249.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 1245-1249
-
-
Rice, G.1
Kane, C.2
Chamberlin, M.3
-
92
-
-
0030053611
-
Structural organization of transcription termination factor Rho
-
Richardson, J. 1996. Structural organization of transcription termination factor Rho. J. Biol. Chem. 271:1251-1254.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 1251-1254
-
-
Richardson, J.1
-
93
-
-
0000882465
-
Control of RNA chain elongation and termination
-
F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), ASM Press, Washington, D.C.
-
Richardson, J., and J. Greenblatt. 1996. Control of RNA chain elongation and termination, p. 822-848. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, D.C.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology
, pp. 822-848
-
-
Richardson, J.1
Greenblatt, J.2
-
96
-
-
0002455127
-
Transcription termination and its control
-
E. Lin and A. Lynch (ed.), R. G. Landes Co., Austin, Tex.
-
Roberts, J. W. 1996. Transcription termination and its control, p. 27-44. In E. Lin and A. Lynch (ed.), Regulation of gene expression in E. coli. R. G. Landes Co., Austin, Tex.
-
(1996)
Regulation of Gene Expression in E. Coli
, pp. 27-44
-
-
Roberts, J.W.1
-
97
-
-
0021840415
-
R promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening
-
R promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening. J. Mol. Biol. 184:441-453.
-
(1985)
J. Mol. Biol.
, vol.184
, pp. 441-453
-
-
Roe, J.1
Burgess, R.2
Record, M.3
-
98
-
-
0027761839
-
A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase
-
Ross, W., K. Gosink, J. Salomon, K. Igarashi, C. Zou, A. Ishihama, K. Severinov, and R. Gourse. 1993. A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase. Science 262:1407-1413.
-
(1993)
Science
, vol.262
, pp. 1407-1413
-
-
Ross, W.1
Gosink, K.2
Salomon, J.3
Igarashi, K.4
Zou, C.5
Ishihama, A.6
Severinov, K.7
Gourse, R.8
-
99
-
-
0021765665
-
Amplification and isolation of Escherichia coli nusA protein and studies of its effects on in vitro RNA chain elongation
-
Schmidt, M., and M. Chamberlin. 1984. Amplification and isolation of Escherichia coli nusA protein and studies of its effects on in vitro RNA chain elongation. Biochemistry 23:197-203.
-
(1984)
Biochemistry
, vol.23
, pp. 197-203
-
-
Schmidt, M.1
Chamberlin, M.2
-
100
-
-
0027248774
-
Three-dimensional model of RNA polymerase I determined by electron microscopy of two-dimensional crystals
-
Schultz, P., H. Célia, M. Riva, A. Sentenac, and P. Oudet. 1993. Three-dimensional model of RNA polymerase I determined by electron microscopy of two-dimensional crystals. EMBO J. 12:2601-2607.
-
(1993)
EMBO J.
, vol.12
, pp. 2601-2607
-
-
Schultz, P.1
Célia, H.2
Riva, M.3
Sentenac, A.4
Oudet, P.5
-
102
-
-
0028841199
-
Stretolydigin-resistant mutants in an evolutionarily conserved region of the β′ subunit of Escherichia coli RNA polymerase
-
Severinov, K., D. Markov, E. Sererinova, V. Nikiforov, R. Landick, S. Darst, and A. Goldfarb. 1995. Stretolydigin-resistant mutants in an evolutionarily conserved region of the β′ subunit of Escherichia coli RNA polymerase. J. Biol. Chem. 270:23926-23929.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 23926-23929
-
-
Severinov, K.1
Markov, D.2
Sererinova, E.3
Nikiforov, V.4
Landick, R.5
Darst, S.6
Goldfarb, A.7
-
103
-
-
0030808646
-
Tethering of the large subunits of Escherichia coli RNA polymerase
-
Severinov, K., R. Mooney, S. Darst, and R. Landick. 1997. Tethering of the large subunits of Escherichia coli RNA polymerase. J. Biol. Chem. 272:24137-24140.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 24137-24140
-
-
Severinov, K.1
Mooney, R.2
Darst, S.3
Landick, R.4
-
104
-
-
0029861154
-
Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta′ subunits of Escherichia coli RNA polymerase
-
Severinov, K., A. Mustaev, A. Kukarin, O. Muzzin, I. Bass, S. Darst, and A. Goldfarb. 1997. Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta′ subunits of Escherichia coli RNA polymerase. J. Biol. Chem. 271:27969-27974.
-
(1997)
J. Biol. Chem.
, vol.271
, pp. 27969-27974
-
-
Severinov, K.1
Mustaev, A.2
Kukarin, A.3
Muzzin, O.4
Bass, I.5
Darst, S.6
Goldfarb, A.7
-
105
-
-
0028990231
-
Assembly of functional Escherichia coli RNA polymerase containing β subunit fragments
-
Severinov, K., A. Mustaev, E. Severinova, I. Bass, M. Kashlev, R. Landick, V. Nikiforov, A. Goldfarb, and S. Darst. 1995. Assembly of functional Escherichia coli RNA polymerase containing β subunit fragments. Proc. Natl. Acad. Sci. USA 92:4591-4595.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 4591-4595
-
-
Severinov, K.1
Mustaev, A.2
Severinova, E.3
Bass, I.4
Kashlev, M.5
Landick, R.6
Nikiforov, V.7
Goldfarb, A.8
Darst, S.9
-
106
-
-
0027320544
-
Rifampicin region revisited. New rifampicin-resistant and streptolydigin-resistant mutants in the beta subunit of Escherichia coli RNA polymerase
-
Severinov, K., M. Soushko, A. Goldfarb, and V. Nikiforov. 1993. Rifampicin region revisited. New rifampicin-resistant and streptolydigin-resistant mutants in the beta subunit of Escherichia coli RNA polymerase. J. Biol. Chem. 268:14820-14825.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 14820-14825
-
-
Severinov, K.1
Soushko, M.2
Goldfarb, A.3
Nikiforov, V.4
-
107
-
-
0029786848
-
Dual regulation of open-complex formation and promoter clearance by Arc explains a novel repressor to activator switch
-
Smith, T., and R. Sauer. 1996. Dual regulation of open-complex formation and promoter clearance by Arc explains a novel repressor to activator switch. Proc. Natl. Acad. Sci. USA 93:8868-8872.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8868-8872
-
-
Smith, T.1
Sauer, R.2
-
108
-
-
0028606031
-
A unified polymerase mechanism for nonhomologous DNA and RNA polymerase
-
Steitz, T., S. Smerdon, J. Jager, and C. Joyce. 1994. A unified polymerase mechanism for nonhomologous DNA and RNA polymerase. Science 266:2022-2025.
-
(1994)
Science
, vol.266
, pp. 2022-2025
-
-
Steitz, T.1
Smerdon, S.2
Jager, J.3
Joyce, C.4
-
110
-
-
0029810399
-
Isolation and characterization of defective Escherichia coli RNA polymerase rpoB mutations
-
Tavromina, P., R. Landick, and C. Gross. 1996. Isolation and characterization of defective Escherichia coli RNA polymerase rpoB mutations. J. Bacteriol. 178:5263-5371.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5263-5371
-
-
Tavromina, P.1
Landick, R.2
Gross, C.3
-
111
-
-
0024338495
-
Terminator-distal sequences determine the in vitro efficiency of the early terminators of bacteriophages T3 and T7
-
Telesnitsky, A., and M. Chamberlin. 1989. Terminator-distal sequences determine the in vitro efficiency of the early terminators of bacteriophages T3 and T7. Biochemistry 28:5210-5218.
-
(1989)
Biochemistry
, vol.28
, pp. 5210-5218
-
-
Telesnitsky, A.1
Chamberlin, M.2
-
112
-
-
0025005373
-
A quantitative assessment for transcriptional pausing of DNA-dependent RNA polymerases in vitro
-
Theissen, G., B. Pardon, and R. Wagner. 1990. A quantitative assessment for transcriptional pausing of DNA-dependent RNA polymerases in vitro. Anal. Biochem. 189:254-261.
-
(1990)
Anal. Biochem.
, vol.189
, pp. 254-261
-
-
Theissen, G.1
Pardon, B.2
Wagner, R.3
-
113
-
-
85034670934
-
Factor-independent termination of transcription in a stretch of deoxyadenosine residues in the template DNA
-
Tomizawa, J., and H. Masukata. 1987. Factor-independent termination of transcription in a stretch of deoxyadenosine residues in the template DNA. Genes Dev. 1:217-226.
-
(1987)
Genes Dev.
, vol.1
, pp. 217-226
-
-
Tomizawa, J.1
Masukata, H.2
-
114
-
-
84960561455
-
On computable numbers, with an application to the entscheidungs-problem
-
Turing, A. 1936. On computable numbers, with an application to the entscheidungs-problem. Proc. Lond. Math. Soc. 43:230-265.
-
(1936)
Proc. Lond. Math. Soc.
, vol.43
, pp. 230-265
-
-
Turing, A.1
-
115
-
-
0031459888
-
Escherichia coli RNA polymerase terminates transcription efficiently at rho-independent terminators on single-stranded DNA templates
-
Uptain, S., and M. Chamberlin. 1997. Escherichia coli RNA polymerase terminates transcription efficiently at rho-independent terminators on single-stranded DNA templates. Proc. Natl. Acad. Sci. USA 94:13548-13553.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13548-13553
-
-
Uptain, S.1
Chamberlin, M.2
-
116
-
-
0031008221
-
Basic mechanisms of transcript elongation and its regulation
-
Uptain, S., C. Kane, and M. Chamberlin. 1997. Basic mechanisms of transcript elongation and its regulation. Annu. Rev. Biochem. 66:117-172.
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 117-172
-
-
Uptain, S.1
Kane, C.2
Chamberlin, M.3
-
117
-
-
0031058485
-
Nuclease cleavage of the upstream half of the nontemplate strand DNA in an E. coli transcription elongation complex causes upstream translocation and transcriptional arrest
-
Wang, D., and R. Landick. 1997. Nuclease cleavage of the upstream half of the nontemplate strand DNA in an E. coli transcription elongation complex causes upstream translocation and transcriptional arrest. J. Biol. Chem. 272:5989-5994.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 5989-5994
-
-
Wang, D.1
Landick, R.2
-
118
-
-
0030738525
-
Preferential interaction of the his pause RNA hairpin with RNA polymerase β subunit residues 904-950 correlates with strong transcriptional pausing
-
Wang, D., and R. Landick. 1997. Preferential interaction of the his pause RNA hairpin with RNA polymerase β subunit residues 904-950 correlates with strong transcriptional pausing. Proc. Natl. Acad. Sci. USA 94:8433-8438.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 8433-8438
-
-
Wang, D.1
Landick, R.2
-
119
-
-
0029029468
-
Discontinuous movements of DNA and RNA in E. coli RNA polymerase accompany formation of a paused transcription complex
-
Wang, D., T. Meier, C. Chan, G. Feng, D. Lee, and R. Landick. 1995. Discontinuous movements of DNA and RNA in E. coli RNA polymerase accompany formation of a paused transcription complex. Cell 81:341-350.
-
(1995)
Cell
, vol.81
, pp. 341-350
-
-
Wang, D.1
Meier, T.2
Chan, C.3
Feng, G.4
Lee, D.5
Landick, R.6
-
120
-
-
0028104343
-
Termination-altering amino acid substitutions in the β′ subunit of Escherichia coli RNA polymerase identify regions involved in RNA chain elongation
-
Weilbaecher, R., C. Hebron, G. Feng, and R. Landick. 1994. Termination-altering amino acid substitutions in the β′ subunit of Escherichia coli RNA polymerase identify regions involved in RNA chain elongation. Genes Dev. 8:2913-2917.
-
(1994)
Genes Dev.
, vol.8
, pp. 2913-2917
-
-
Weilbaecher, R.1
Hebron, C.2
Feng, G.3
Landick, R.4
-
121
-
-
0029073396
-
Transcription termination at intrinsic terminators: The role of the RNA hairpin
-
Wilson, K., and P. von Hippel. 1995. Transcription termination at intrinsic terminators: the role of the RNA hairpin. Proc. Natl. Acad. Sci. USA 92:8793-8797.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 8793-8797
-
-
Wilson, K.1
Von Hippel, P.2
-
122
-
-
0017571022
-
Subunit location of the intrinsic divalent metal ions in RNA polymerase from Escherichia coli
-
Wu, C., F. Wu, and D. Speckhard. 1977. Subunit location of the intrinsic divalent metal ions in RNA polymerase from Escherichia coli. Biochemistry 16:5449-5454.
-
(1977)
Biochemistry
, vol.16
, pp. 5449-5454
-
-
Wu, C.1
Wu, F.2
Speckhard, D.3
-
123
-
-
0001323636
-
Transcript elongation and termination in Escherichia coli
-
F. C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (ed.), American Society for Microbiology, Washington, D.C.
-
Yager, T. D., and P. H. von Hippel. 1987. Transcript elongation and termination in Escherichia coli, p. 1241-1275. In F. C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella typhimurium: cellular and molecular biology. American Society for Microbiology, Washington, D.C.
-
(1987)
Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology
, pp. 1241-1275
-
-
Yager, T.D.1
Von Hippel, P.H.2
-
124
-
-
0026084789
-
A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli
-
Yager, T. D., and P. H. von Hippel. 1991. A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli. Biochemistry 30:1097-1118.
-
(1991)
Biochemistry
, vol.30
, pp. 1097-1118
-
-
Yager, T.D.1
Von Hippel, P.H.2
-
125
-
-
0026068741
-
Suppressor analysis of temperature-sensitive mutations of the largest subunit of RNA polymerase I in Saccharomyces cerevisiae: A suppressor gene encodes the second-largest subunit of RNA polymerase I
-
Yano, R., and M. Nomura. 1991. Suppressor analysis of temperature-sensitive mutations of the largest subunit of RNA polymerase I in Saccharomyces cerevisiae: a suppressor gene encodes the second-largest subunit of RNA polymerase I. Mol. Cell. Biol. 11:754-764.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 754-764
-
-
Yano, R.1
Nomura, M.2
-
126
-
-
0025739871
-
RNA polymerase II
-
Young, R. A. 1991. RNA polymerase II. Annu. Rev. Biochem. 60:689-715.
-
(1991)
Annu. Rev. Biochem.
, vol.60
, pp. 689-715
-
-
Young, R.A.1
-
128
-
-
9344221087
-
Mapping of catalytic residues in the RNA polymerase active center
-
Zaychikov, E., E. Martin, L. Denissova, M. Kozlov, V. Markovstov, M. Kashlev, H. Heumann, V. Nikiforov, A. Goldfarb, and A. Mustaev. 1996. Mapping of catalytic residues in the RNA polymerase active center. Science 271:107-109.
-
(1996)
Science
, vol.271
, pp. 107-109
-
-
Zaychikov, E.1
Martin, E.2
Denissova, L.3
Kozlov, M.4
Markovstov, V.5
Kashlev, M.6
Heumann, H.7
Nikiforov, V.8
Goldfarb, A.9
Mustaev, A.10
-
129
-
-
0028261411
-
NusA changes the conformation of Escherichia coli RNA polymerase at the binding site for the 3′ end of the nascent RNA
-
Zhang, Y., and M. Hanna. 1994. NusA changes the conformation of Escherichia coli RNA polymerase at the binding site for the 3′ end of the nascent RNA. J. Bacteriol. 176:1787-1789.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1787-1789
-
-
Zhang, Y.1
Hanna, M.2
-
130
-
-
0028108756
-
Reduced Rho-dependent transcription termination permits NusA-independent growth of Escherichia coli
-
Zheng, C., and D. Friedman. 1994. Reduced Rho-dependent transcription termination permits NusA-independent growth of Escherichia coli. Proc. Natl. Acad. Sci. USA 91:7543-7547.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 7543-7547
-
-
Zheng, C.1
Friedman, D.2
|