메뉴 건너뛰기




Volumn 15, Issue 10, 2005, Pages 1373-1378

Evolutionary constraints in conserved nongenic sequences of mammals

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 25844469247     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.3942005     Document Type: Article
Times cited : (47)

References (29)
  • 2
    • 1842667852 scopus 로고    scopus 로고
    • MAVID: Constrained ancestral alignment of multiple sequences
    • Bray, N. and Pachter, L. 2004. MAVID: Constrained ancestral alignment of multiple sequences. Genome Res. 14: 693-699.
    • (2004) Genome Res. , vol.14 , pp. 693-699
    • Bray, N.1    Pachter, L.2
  • 6
    • 2442695243 scopus 로고    scopus 로고
    • Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment
    • Dermitzakis, E.T., Kirkness, E., Schwarz, S., Birney, E., Reymond, A., and Antonarakis, S.E. 2004. Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment. Genome Res. 14: 852-859.
    • (2004) Genome Res. , vol.14 , pp. 852-859
    • Dermitzakis, E.T.1    Kirkness, E.2    Schwarz, S.3    Birney, E.4    Reymond, A.5    Antonarakis, S.E.6
  • 7
    • 0036900082 scopus 로고    scopus 로고
    • Quantifying the slightly deleterious model of molecular evolution
    • Eyre-Walker, A., Keightley, P.D., Smith, N.G.C., and Gaffney, D. 2002. Quantifying the slightly deleterious model of molecular evolution. Mol. Biol. Evol. 19: 2142-2149.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2142-2149
    • Eyre-Walker, A.1    Keightley, P.D.2    Smith, N.G.C.3    Gaffney, D.4
  • 9
    • 23744486255 scopus 로고    scopus 로고
    • The scale of mutational variability in the murid genome
    • Gaffney, D.J. and Keightley, P.D. 2005. The scale of mutational variability in the murid genome. Genome Res. 5: 1086-1094.
    • (2005) Genome Res. , vol.5 , pp. 1086-1094
    • Gaffney, D.J.1    Keightley, P.D.2
  • 10
    • 1242296827 scopus 로고    scopus 로고
    • Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila
    • Halligan, D.L., Eyre-Walker, A., Andolfatto, P., and Keightley, P.D. 2004. Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila. Genome Res. 14: 273-279.
    • (2004) Genome Res. , vol.14 , pp. 273-279
    • Halligan, D.L.1    Eyre-Walker, A.2    Andolfatto, P.3    Keightley, P.D.4
  • 13
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • International Chicken Genome Sequencing Consortium. 2004. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716.
    • (2004) Nature , vol.432 , pp. 695-716
  • 14
    • 0034644576 scopus 로고    scopus 로고
    • Deleterious mutations and the evolution of sex
    • Keightley, P.D. and Eyre-Walker, A. 2000. Deleterious mutations and the evolution of sex. Science 290: 331-333.
    • (2000) Science , vol.290 , pp. 331-333
    • Keightley, P.D.1    Eyre-Walker, A.2
  • 15
    • 1542316915 scopus 로고    scopus 로고
    • MCALIGN: Stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution
    • Keightley, P.D. and Johnson, T. 2004. MCALIGN: Stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution. Genome Res. 14: 442-450.
    • (2004) Genome Res. , vol.14 , pp. 442-450
    • Keightley, P.D.1    Johnson, T.2
  • 16
    • 15744388330 scopus 로고    scopus 로고
    • Evidence for widespread degradation of gene control regions in hominid genomes
    • Keightley, P.D., Lercher, M.J., and Eyre-Walker, A. 2005. Evidence for widespread degradation of gene control regions in hominid genomes. PLoS Biol. 3: 282-288.
    • (2005) PLoS Biol. , vol.3 , pp. 282-288
    • Keightley, P.D.1    Lercher, M.J.2    Eyre-Walker, A.3
  • 17
    • 0023737547 scopus 로고
    • Deleterious mutation and the evolution of sexual reproduction
    • Kondrashov, A.S. 1988. Deleterious mutation and the evolution of sexual reproduction. Nature 336: 435-440.
    • (1988) Nature , vol.336 , pp. 435-440
    • Kondrashov, A.S.1
  • 18
    • 0034748984 scopus 로고    scopus 로고
    • Local similarity in evolutionary rates extends over whole chromosomes in human-rodent and mouse-rat comparisons: Implications for understanding the mechanistic basis of the male mutation bias
    • Lercher, M.J., Williams, E.J.B., and Hurst, L.D. 2001. Local similarity in evolutionary rates extends over whole chromosomes in human-rodent and mouse-rat comparisons: Implications for understanding the mechanistic basis of the male mutation bias. Mol. Biol. Evol. 18: 2032-2039.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 2032-2039
    • Lercher, M.J.1    Williams, E.J.B.2    Hurst, L.D.3
  • 19
    • 3042616134 scopus 로고    scopus 로고
    • Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile
    • Lercher, M.J., Chamary, J.V., and Hurst, L.D. 2004. Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile. Genome Res. 14: 1002-1013.
    • (2004) Genome Res. , vol.14 , pp. 1002-1013
    • Lercher, M.J.1    Chamary, J.V.2    Hurst, L.D.3
  • 20
    • 10744222156 scopus 로고    scopus 로고
    • Identification and characterization of multi-species conserved sequences
    • Margulies, E.H., Blanchette, M., Haussler, D., and Green, E.D. 2003. Identification and characterization of multi-species conserved sequences. Genome Res. 13: 2507-2518.
    • (2003) Genome Res. , vol.13 , pp. 2507-2518
    • Margulies, E.H.1    Blanchette, M.2    Haussler, D.3    Green, E.D.4
  • 21
    • 0033615073 scopus 로고    scopus 로고
    • Chromosomal location effects on gene sequence evolution in mammals
    • Matassi, G., Sharp, P.M., and Gautier, C. 1999. Chromosomal location effects on gene sequence evolution in mammals. Curr. Biol. 9: 786-791.
    • (1999) Curr. Biol. , vol.9 , pp. 786-791
    • Matassi, G.1    Sharp, P.M.2    Gautier, C.3
  • 22
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
    • (2002) Nature , vol.420 , pp. 520-562
  • 23
    • 0142084743 scopus 로고    scopus 로고
    • Scanning human gene deserts for long range enhancers
    • Nobrega, M.A., Ovcharenko, I., Afzal, V., and Rubin, E.M. 2003. Scanning human gene deserts for long range enhancers. Science 302: 413.
    • (2003) Science , vol.302 , pp. 413
    • Nobrega, M.A.1    Ovcharenko, I.2    Afzal, V.3    Rubin, E.M.4
  • 24
    • 0041817551 scopus 로고    scopus 로고
    • Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
    • Rannala, B. and Yang, Z. 2003. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164: 1645-1656.
    • (2003) Genetics , vol.164 , pp. 1645-1656
    • Rannala, B.1    Yang, Z.2
  • 25
    • 0036737595 scopus 로고    scopus 로고
    • Deterministic mutation rate variation in the human genome
    • Smith, N.G.C., Webster, M.T., and Ellegren, H. 2002. Deterministic mutation rate variation in the human genome. Genome Res. 12: 1350-1356.
    • (2002) Genome Res. , vol.12 , pp. 1350-1356
    • Smith, N.G.C.1    Webster, M.T.2    Ellegren, H.3
  • 26
    • 0027157960 scopus 로고
    • Estimation of the number of substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura, K. and Nei, M. 1993. Estimation of the number of substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 28
    • 0037326506 scopus 로고    scopus 로고
    • Compositional evolution of noncoding DNA in the human and chimpanzee genomes
    • Webster, M.T., Smith, N.G.C., and Ellegren, H. 2003. Compositional evolution of noncoding DNA in the human and chimpanzee genomes. Mol. Biol. Evol. 20: 278-286.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 278-286
    • Webster, M.T.1    Smith, N.G.C.2    Ellegren, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.