-
1
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams, M.D., Celniker, S.E., Holt, R.A., Evans, C.A., Gocayne, J.D., Amanatides, P.G., Scherer, S.E., Li, P.W., Hoskins, R.A., Galle, R.F., et al. 2000. The genome sequence of Drosophila melanogaster. Science 287: 2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
2
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at silent sites in Drosophila DNA
-
Akashi, H. 1995. Inferring weak selection from patterns of polymorphism and divergence at silent sites in Drosophila DNA. Genetics 139: 1067-1076.
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
3
-
-
0029985179
-
Molecular evolution between Drosophila melanogaster and D. simulans: Reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster
-
Akashi, H. 1996. Molecular evolution between Drosophila melanogaster and D. simulans: Reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster. Genetics 144: 1297-1307.
-
(1996)
Genetics
, vol.144
, pp. 1297-1307
-
-
Akashi, H.1
-
4
-
-
0032953881
-
Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination
-
Akashi, H. 1999. Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination. Genetics 151: 221-238.
-
(1999)
Genetics
, vol.151
, pp. 221-238
-
-
Akashi, H.1
-
5
-
-
0035107550
-
Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans
-
Andolfatto, P. 2001. Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans. Mol. Biol. Evol. 18: 279-290.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 279-290
-
-
Andolfatto, P.1
-
6
-
-
0024058618
-
The rosy region of Drosophila melanogaster and Drosophila simulans .1. contrasting levels of naturally-occurring DNA restriction map variation and divergence
-
Aquadro, C.F., Lado, K.M., and Noon, W.A. 1988. The rosy region of Drosophila melanogaster and Drosophila simulans .1. contrasting levels of naturally-occurring DNA restriction map variation and divergence. Genetics 119: 875-888.
-
(1988)
Genetics
, vol.119
, pp. 875-888
-
-
Aquadro, C.F.1
Lado, K.M.2
Noon, W.A.3
-
7
-
-
0036964070
-
Molecular population genetics of Xdh and the evolution of base composition in Drosophila
-
Begun, D.J. and Whitley, P. 2002. Molecular population genetics of Xdh and the evolution of base composition in Drosophila. Genetics 162: 1725-1735.
-
(2002)
Genetics
, vol.162
, pp. 1725-1735
-
-
Begun, D.J.1
Whitley, P.2
-
8
-
-
0034883255
-
Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
-
Bergman, C.M. and Kreitman, M. 2001. Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. Genome Res. 11: 1335-1345.
-
(2001)
Genome Res.
, vol.11
, pp. 1335-1345
-
-
Bergman, C.M.1
Kreitman, M.2
-
9
-
-
7344230525
-
Some evolutionary consequences of deleterious mutations
-
Charlesworth, B. and Charlesworth, D. 1998. Some evolutionary consequences of deleterious mutations. Genetica 103: 3-19.
-
(1998)
Genetica
, vol.103
, pp. 3-19
-
-
Charlesworth, B.1
Charlesworth, D.2
-
10
-
-
0035130163
-
Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
-
Chen, F.-C. and Li, W.-H. 2001. Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 68: 444-456.
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 444-456
-
-
Chen, F.-C.1
Li, W.-H.2
-
11
-
-
0034891211
-
The search for meaning in noncoding DNA
-
Clark, A.G. 2001. The search for meaning in noncoding DNA. Genome Res. 11: 1319-1320.
-
(2001)
Genome Res.
, vol.11
, pp. 1319-1320
-
-
Clark, A.G.1
-
12
-
-
0033977618
-
Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate
-
Duret, L. and Mouchiroud, D. 2000. Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate. Mol. Biol. Evol. 17: 68-74.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 68-74
-
-
Duret, L.1
Mouchiroud, D.2
-
13
-
-
0036959203
-
Vanishing GC-rich isochores in mammalian genomes
-
Duret, L., Semon, M., Piganeau, G., Mouchiroud, D., and Galtier, N. 2002. Vanishing GC-rich isochores in mammalian genomes. Genetics 162: 1837-1847.
-
(2002)
Genetics
, vol.162
, pp. 1837-1847
-
-
Duret, L.1
Semon, M.2
Piganeau, G.3
Mouchiroud, D.4
Galtier, N.5
-
14
-
-
0029027991
-
Synonymous substitution rates in enterobacteria
-
Eyre-Walker, A. and Bulmer, M. 1995 . Synonymous substitution rates in enterobacteria. Genetics 140: 1407-1412.
-
(1995)
Genetics
, vol.140
, pp. 1407-1412
-
-
Eyre-Walker, A.1
Bulmer, M.2
-
15
-
-
0033611501
-
High genomic deleterious mutation rates in hominids
-
Eyre-Walker, A. and Keightley, P.D. 1999. High genomic deleterious mutation rates in hominids. Nature 397: 344-347.
-
(1999)
Nature
, vol.397
, pp. 344-347
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
16
-
-
0036900082
-
Quantifying the slightly deleterious model of molecular evolution
-
Eyre-Walker, A., Keightley, P.D., Smith, N.G.C., and Gaffney, D. 2002. Quantifying the slightly deleterious model of molecular evolution. Mol. Biol. Evol. 19: 2142-2149.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2142-2149
-
-
Eyre-Walker, A.1
Keightley, P.D.2
Smith, N.G.C.3
Gaffney, D.4
-
17
-
-
0018263844
-
Why genes in pieces
-
Gilbert, W. 1978. Why genes in pieces. Nature 271: 501.
-
(1978)
Nature
, vol.271
, pp. 501
-
-
Gilbert, W.1
-
18
-
-
0037372327
-
A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions
-
Glazko, G.V., Koonin, E.V., Rogozin, I.B., and Shabalina, S.A. 2003. A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions. Trends Genet. 19: 119-124.
-
(2003)
Trends Genet.
, vol.19
, pp. 119-124
-
-
Glazko, G.V.1
Koonin, E.V.2
Rogozin, I.B.3
Shabalina, S.A.4
-
19
-
-
0028943946
-
The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment
-
Gu, X. and Li, W-H. 1995. The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment. J. Mol. Evol. 40: 464-473.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 464-473
-
-
Gu, X.1
Li, W.-H.2
-
20
-
-
18544404720
-
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution
-
Hardison, R.C., Roskin, K.M., Yang, S., Diekhans, M., Kent, W.J., Weber, R., Elnitski, L., Li, J., O'Connor, M., Kolbe, D., et al. 2003. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Res. 13: 13-26.
-
(2003)
Genome Res.
, vol.13
, pp. 13-26
-
-
Hardison, R.C.1
Roskin, K.M.2
Yang, S.3
Diekhans, M.4
Kent, W.J.5
Weber, R.6
Elnitski, L.7
Li, J.8
O'Connor, M.9
Kolbe, D.10
-
21
-
-
0038104863
-
Selection on human genes as revealed by comparisons to chimpanzee cDNA
-
Hellmann, I., Zollner, S., Enard W., Ebersberger, I., Nickel, B., and Pääbo, S. 2003. Selection on human genes as revealed by comparisons to chimpanzee cDNA. Genome Res. 13: 831-837.
-
(2003)
Genome Res.
, vol.13
, pp. 831-837
-
-
Hellmann, I.1
Zollner, S.2
Enard, W.3
Ebersberger, I.4
Nickel, B.5
Pääbo, S.6
-
22
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
23
-
-
0032884653
-
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
-
Jareborg, N., Birney, E., and Durbin, R. 1999. Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res. 9: 815-824.
-
(1999)
Genome Res.
, vol.9
, pp. 815-824
-
-
Jareborg, N.1
Birney, E.2
Durbin, R.3
-
24
-
-
0344824015
-
Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents
-
Keightley, P.D. and Gaffney, D.J. 2003. Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents. Proc. Natl. Acad. Sci. 100: 13402-13406.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 13402-13406
-
-
Keightley, P.D.1
Gaffney, D.J.2
-
26
-
-
0029026878
-
Maintenance of pre-mRNA secondary structure by epistatic selection
-
Kirby, D.A., Muse, S.V., and Stephan, W. 1995. Maintenance of pre-mRNA secondary structure by epistatic selection. Proc. Natl. Acad. Sci. 92: 9047-9051.
-
(1995)
Proc. Natl. Acad. Sci.
, vol.92
, pp. 9047-9051
-
-
Kirby, D.A.1
Muse, S.V.2
Stephan, W.3
-
27
-
-
0029130141
-
Contamination of the genome by very slightly deleterious mutations. Why have we not died 100 times over?
-
Kondrashov, A.S. 1995. Contamination of the genome by very slightly deleterious mutations. Why have we not died 100 times over? J. Theor. Biol. 175: 583-594.
-
(1995)
J. Theor. Biol.
, vol.175
, pp. 583-594
-
-
Kondrashov, A.S.1
-
28
-
-
0027200764
-
A molecular approach to estimating the human deleterious mutation rate
-
Kondrashov, A.S. and Crow, J.F. 1993. A molecular approach to estimating the human deleterious mutation rate. Hum. Mutat. 2: 229-234.
-
(1993)
Hum. Mutat.
, vol.2
, pp. 229-234
-
-
Kondrashov, A.S.1
Crow, J.F.2
-
29
-
-
0028799521
-
Constraints on intron evolution in the gene encoding the myosin alkali light-chain in Drosophila
-
Leicht, B.G., Muse, S.V., Hanczyc, M., and Clark, A.G. 1995. Constraints on intron evolution in the gene encoding the myosin alkali light-chain in Drosophila. Genetics 139: 299-308.
-
(1995)
Genetics
, vol.139
, pp. 299-308
-
-
Leicht, B.G.1
Muse, S.V.2
Hanczyc, M.3
Clark, A.G.4
-
32
-
-
0028826670
-
Evolutionary dynamics of the enhancer region of even-skipped in Drosophila
-
Ludwig, M.Z. and Kreitman, M. 1995. Evolutionary dynamics of the enhancer region of even-skipped in Drosophila. Mol. Biol. Evol. 12: 1002-1011.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 1002-1011
-
-
Ludwig, M.Z.1
Kreitman, M.2
-
33
-
-
0035157374
-
Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila
-
McVean, G.A.T. and Vieira, J. 2001. Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila. Genetics 157: 245-257.
-
(2001)
Genetics
, vol.157
, pp. 245-257
-
-
McVean, G.A.T.1
Vieira, J.2
-
34
-
-
0037396691
-
Efficient high-throughput resequencing of genomic DNA
-
Miller, M.D., Duan, S., Lovins, E.G., Kloss, E.F., and Kwok, P. 2003. Efficient high-throughput resequencing of genomic DNA. Genome Res. 13: 717-720.
-
(2003)
Genome Res.
, vol.13
, pp. 717-720
-
-
Miller, M.D.1
Duan, S.2
Lovins, E.G.3
Kloss, E.F.4
Kwok, P.5
-
35
-
-
0030034357
-
Intraspecific nuclear DNA variation in Drosophila
-
Moriyama, E.N. and Powell, J.R. 1996. Intraspecific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13: 261-277.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 261-277
-
-
Moriyama, E.N.1
Powell, J.R.2
-
36
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Mouse Genome Sequencing Consortium
-
Mouse Genome Sequencing Consortium. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
-
37
-
-
0027020232
-
The nearly neutral theory of molecular evolution
-
Ohta, T. 1992. The nearly neutral theory of molecular evolution. Ann. Rev. Ecol. Syst. 23: 263-286.
-
(1992)
Ann. Rev. Ecol. Syst.
, vol.23
, pp. 263-286
-
-
Ohta, T.1
-
38
-
-
0029856377
-
High intrinsic rate of DNA loss in Drosophila
-
Petrov, D.A., Lozovskaya, E.R., and Hartl, D.L. 1996. High intrinsic rate of DNA loss in Drosophila. Nature 384: 346-349.
-
(1996)
Nature
, vol.384
, pp. 346-349
-
-
Petrov, D.A.1
Lozovskaya, E.R.2
Hartl, D.L.3
-
39
-
-
0032848247
-
Pattern of selective constraint in C. elegans and C. briggsae genomes
-
Shabalina, S.A. and Kondrashov, A.S. 1999. Pattern of selective constraint in C. elegans and C. briggsae genomes. Genet. Res. 74: 23-30.
-
(1999)
Genet. Res.
, vol.74
, pp. 23-30
-
-
Shabalina, S.A.1
Kondrashov, A.S.2
-
40
-
-
0035399726
-
Selective constraint in intergenic regions of human and mouse genomes
-
Shabalina, S.A., Ogurtsov, A.Y., Kondrashov, V.A., and Kondrashov, A.S. 2001. Selective constraint in intergenic regions of human and mouse genomes. Trends Genet. 17: 373-376.
-
(2001)
Trends Genet.
, vol.17
, pp. 373-376
-
-
Shabalina, S.A.1
Ogurtsov, A.Y.2
Kondrashov, V.A.3
Kondrashov, A.S.4
-
41
-
-
0028307171
-
Split genes and RNA splicing
-
Sharp, P.A. 1994. Split genes and RNA splicing. Cell 77: 805-815.
-
(1994)
Cell
, vol.77
, pp. 805-815
-
-
Sharp, P.A.1
-
42
-
-
0024116811
-
Silent sites in Drosophila genes are not neutral-Evidence of selection among synonymous codons
-
Shields, D.C., Sharp, P.M., Higgins, D.G., and Wright, F. 1988. Silent sites in Drosophila genes are not neutral-Evidence of selection among synonymous codons. Mol. Biol. Evol. 5: 704-716.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 704-716
-
-
Shields, D.C.1
Sharp, P.M.2
Higgins, D.G.3
Wright, F.4
-
43
-
-
0027164566
-
RNA folding in Drosophila shows a distance effect for compensatory fitness interactions
-
Stephan, W. and Kirby, D.A. 1993. RNA folding in Drosophila shows a distance effect for compensatory fitness interactions. Genetics 135: 97-103.
-
(1993)
Genetics
, vol.135
, pp. 97-103
-
-
Stephan, W.1
Kirby, D.A.2
-
44
-
-
0038781903
-
Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
-
Subramanian, S. and Kumar, S. 2003. Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes. Genome Res. 13: 838-844.
-
(2003)
Genome Res.
, vol.13
, pp. 838-844
-
-
Subramanian, S.1
Kumar, S.2
-
45
-
-
0027968068
-
CLUSTAL W-Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W-Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
46
-
-
0026079507
-
An evolutionary model for maximum likelihood alignment of DNA sequences
-
Thorne, J.L., Kishino, H., and Felsenstein, J. 1991. An evolutionary model for maximum likelihood alignment of DNA sequences. J. Mol. Evol. 33: 114-124.
-
(1991)
J. Mol. Evol.
, vol.33
, pp. 114-124
-
-
Thorne, J.L.1
Kishino, H.2
Felsenstein, J.3
-
47
-
-
0026528734
-
Inching toward reality-An improved likelihood model of sequence evolution
-
Thorne, J.L., Kishino, H. and Felsenstein, J. 1992. Inching toward reality-An improved likelihood model of sequence evolution. J. Mol. Evol. 34: 3-16.
-
(1992)
J. Mol. Evol.
, vol.34
, pp. 3-16
-
-
Thorne, J.L.1
Kishino, H.2
Felsenstein, J.3
|