-
1
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen M, Spellman P, Brown P, Botstein D: Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 1998, 95:14863-8.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.1
Spellman, P.2
Brown, P.3
Botstein, D.4
-
2
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie S, Hughes J, Campbell M, Cho R, Church G: Systematic determination of genetic network architecture. Nat. Genet. 1999, 22:281-5.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.2
Campbell, M.3
Cho, R.4
Church, G.5
-
3
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander E, Golub T: Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci. USA 1999, 96:2907-12.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.7
Golub, T.8
-
4
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey T, Elkan C: Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 1994, 2:28-36.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 28-36
-
-
Bailey, T.1
Elkan, C.2
-
5
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth F, Hughes J, Estep P, Church G: Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat Biotechnol. 1998, 16:939-45.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 939-945
-
-
Roth, F.1
Hughes, J.2
Estep, P.3
Church, G.4
-
6
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
van Helden J, Andre B, Collado-Vides J: Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J Mol Biol 1998, 281(5):827-42.
-
(1998)
J. Mol. Biol.
, vol.281
, Issue.5
, pp. 827-842
-
-
van Helden, J.1
Andre, B.2
Collado-Vides, J.3
-
7
-
-
0034785443
-
Identifying regulatory networks by combinatorial analysis of promoter elements
-
Pilpel Y, Sudarsanam P, Church G: Identifying regulatory networks by combinatorial analysis of promoter elements. Nat. Genet. 2001, 29:153-9.
-
(2001)
Nat. Genet.
, vol.29
, pp. 153-159
-
-
Pilpel, Y.1
Sudarsanam, P.2
Church, G.3
-
8
-
-
0035135420
-
Regulatory element detection using correlation with expression
-
Bussemaker H, Li H, Siggia E: Regulatory element detection using correlation with expression. Nat. Genet. 2001, 27:167-71.
-
(2001)
Nat. Genet.
, vol.27
, pp. 167-171
-
-
Bussemaker, H.1
Li, H.2
Siggia, E.3
-
9
-
-
0036740483
-
Identification of regulatory elements using a feature selection method
-
Keles S, van der Laan M, Eisen M: Identification of regulatory elements using a feature selection method. Bioinformatics 2002, 18:1167-75.
-
(2002)
Bioinformatics
, vol.18
, pp. 1167-1175
-
-
Keles, S.1
van der Laan, M.2
Eisen, M.3
-
10
-
-
0037453009
-
Integrating regulatory motif discovery and genome-wide expression analysis
-
Conlon E, Liu X, Lieb J, Liu J: Integrating regulatory motif discovery and genome-wide expression analysis. Proc. Natl. Acad. Sci. USA 2003, 100:3339-44.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 3339-3344
-
-
Conlon, E.1
Liu, X.2
Lieb, J.3
Liu, J.4
-
11
-
-
0034043604
-
Combinatorial motif analysis and hypothesis generation on a genomic scale
-
Hu Y, Sandmeyer S, McLaughlin C, Kibler D: Combinatorial motif analysis and hypothesis generation on a genomic scale. Bioinformatics 2000, 16(3):222-32.
-
(2000)
Bioinformatics
, vol.16
, Issue.3
, pp. 222-232
-
-
Hu, Y.1
Sandmeyer, S.2
McLaughlin, C.3
Kibler, D.4
-
12
-
-
1842455232
-
Regression trees for regulatory element identification
-
Phuong T, Lee D, Lee K: Regression trees for regulatory element identification. Bioinformatics 2004, 20(5):750-7.
-
(2004)
Bioinformatics
, vol.20
, Issue.5
, pp. 750-757
-
-
Phuong, T.1
Lee, D.2
Lee, K.3
-
13
-
-
14744275223
-
Predicting genetic regulatory response using classification
-
Middendorf M, Kundaje A, Wiggins C, Freund Y, Leslie C: Predicting genetic regulatory response using classification. Bioinformatics 2004, 20 Suppl 1:I232-I240.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Middendorf, M.1
Kundaje, A.2
Wiggins, C.3
Freund, Y.4
Leslie, C.5
-
14
-
-
7244224988
-
Combining pattern discovery and discriminant analysis to predict gene co-regulation
-
Simonis N, Wodak S, Cohen G, van Helden J: Combining pattern discovery and discriminant analysis to predict gene co-regulation. Bioinformatics 2004, 20(15):2370-9.
-
(2004)
Bioinformatics
, vol.20
, Issue.15
, pp. 2370-2379
-
-
Simonis, N.1
Wodak, S.2
Cohen, G.3
van Helden, J.4
-
15
-
-
2442446708
-
Genome-wide discovery of transcriptional modules from DNA sequence and gene expression
-
Segal E, Yelensky R, Koller D: Genome-wide discovery of transcriptional modules from DNA sequence and gene expression. Bioinformatics 2003, 19 Suppl 1:i273-82.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Segal, E.1
Yelensky, R.2
Koller, D.3
-
16
-
-
1942453302
-
Predicting gene expression from sequence
-
Beer M, Tavazoie S: Predicting gene expression from sequence. Cell 2004, 117(2):185-98.
-
(2004)
Cell
, vol.117
, Issue.2
, pp. 185-198
-
-
Beer, M.1
Tavazoie, S.2
-
17
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee T, Rinaldi N, Robert F, Odom D, Bar-Joseph Z, Gerber G, Hannett N, Harbison C, Thompson C, Simon I, Zeitlinger J, Jennings E, Murray H, Gordon D, Ren B, Wyrick J, Tagne J, Volkert T, Fraenkel E, Gifford D, Young R: Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 2002, 298:799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.1
Rinaldi, N.2
Robert, F.3
Odom, D.4
Bar-Joseph, Z.5
Gerber, G.6
Hannett, N.7
Harbison, C.8
Thompson, C.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.12
Murray, H.13
Gordon, D.14
Ren, B.15
Wyrick, J.16
Tagne, J.17
Volkert, T.18
Fraenkel, E.19
Gifford, D.20
Young, R.21
more..
-
18
-
-
0345099564
-
Identifying cooperativity among transcription factors controlling the cell cycle in yeast
-
Banerjee N, Zhang M: Identifying cooperativity among transcription factors controlling the cell cycle in yeast. Nucleic Acids Res. 2003, 31:7024-31.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 7024-7031
-
-
Banerjee, N.1
Zhang, M.2
-
19
-
-
2942582468
-
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
-
Gao F, Foat B, Bussemaker H: Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data. BMC Bioinformatics 2004, 5:31.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 31
-
-
Gao, F.1
Foat, B.2
Bussemaker, H.3
-
20
-
-
25444470947
-
Discovering transcriptional regulatory rules from gene expression and TF-DNA binding data by decision tree learning
-
Department of Computer Science and Engineering, Washington University in St Louis Tech. Rep. 43
-
Ruan J, Zhang W: Discovering transcriptional regulatory rules from gene expression and TF-DNA binding data by decision tree learning. Tech. Rep. 43, Department of Computer Science and Engineering, Washington University in St Louis. 2004.
-
(2004)
-
-
Ruan, J.1
Zhang, W.2
-
22
-
-
0043123144
-
REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data
-
Roven C, Bussemaker H: REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data. Nucleic Acids Res 2003, 31(13):3487-90.
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.13
, pp. 3487-3490
-
-
Roven, C.1
Bussemaker, H.2
-
23
-
-
0034072450
-
DNA binding sites: Representation and discovery
-
Stormo G: DNA binding sites: representation and discovery. Bioinformatics 2000, 16:16-23.
-
(2000)
Bioinformatics
, vol.16
, pp. 16-23
-
-
Stormo, G.1
-
27
-
-
0002431740
-
Automatic construction of decision trees from data: A multi-disciplinary survey
-
Murthy SK: Automatic construction of decision trees from data: a multi-disciplinary survey. Data Mining and Knowledge Discovery 1998, 2(4):345-389.
-
(1998)
Data Mining and Knowledge Discovery
, vol.2
, Issue.4
, pp. 345-389
-
-
Murthy, S.K.1
-
28
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman P, Sherlock G, Zhang M, Iyer V, Anders K, Eisen M, Brown P, Botstein D, Futcher B: Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell 1998, 9:3273-97.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.1
Sherlock, G.2
Zhang, M.3
Iyer, V.4
Anders, K.5
Eisen, M.6
Brown, P.7
Botstein, D.8
Futcher, B.9
-
29
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
Cho R, Campbell M, Winzeler E, Steinmetz L, Conway A, Wodicka L, Wolfsberg T, Gabrielian A, Landsman D, Lockhart D, Davis R: A genome-wide transcriptional analysis of the mitotic cell cycle. Mol. Cell 1998, 2:65-73.
-
(1998)
Mol. Cell
, vol.2
, pp. 65-73
-
-
Cho, R.1
Campbell, M.2
Winzeler, E.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
Wolfsberg, T.7
Gabrielian, A.8
Landsman, D.9
Lockhart, D.10
Davis, R.11
-
30
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch A, Spellman P, Kao C, Carmel-Harel O, Eisen M, Storz G, Botstein D, Brown P: Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 2000, 11(12):4241-57.
-
(2000)
Mol. Biol. Cell
, vol.11
, Issue.12
, pp. 4241-4257
-
-
Gasch, A.1
Spellman, P.2
Kao, C.3
Carmel-Harel, O.4
Eisen, M.5
Storz, G.6
Botstein, D.7
Brown, P.8
-
31
-
-
0003790115
-
The effect of class distribution on classifier learning: An empirical study
-
ML-TR-44 Department of Computer Science, Rutgers University Tech. Rep
-
Weiss G, Provost F: The effect of class distribution on classifier learning: an empirical study. Tech. Rep. ML-TR-44, Department of Computer Science, Rutgers University. 2001.
-
(2001)
-
-
Weiss, G.1
Provost, F.2
-
32
-
-
9144242935
-
MIPS: Analysis and annotation of proteins from whole genomes
-
Database issue
-
Mewes H, Amid C, Arnold R, Frishman D, Guldener U, Mannhaupt G, Munsterkotter M, Pagel P, Strack N, Stumpflen V, Warfsmann J, Ruepp A: MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Res 2004, 32 Database issue:D41-4.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Mewes, H.1
Amid, C.2
Arnold, R.3
Frishman, D.4
Guldener, U.5
Mannhaupt, G.6
Munsterkotter, M.7
Pagel, P.8
Strack, N.9
Stumpflen, V.10
Warfsmann, J.11
Ruepp, A.12
-
33
-
-
0031381525
-
Wrappers for feature subset selection
-
Kohavi R, John G: Wrappers for feature subset selection. Artificial Intelligence 1997, 97:273-324.
-
(1997)
Artificial Intelligence
, vol.97
, pp. 273-324
-
-
Kohavi, R.1
John, G.2
-
34
-
-
0031078007
-
Feature selection: Evaluation, application, and small sample performance
-
Jain A, Zonker D: Feature selection: Evaluation, application, and small sample performance. IEEE Trans. on Pattern Analysis and Machine Intelligence 1997, 19:153-158.
-
(1997)
IEEE Trans on Pattern Analysis and Machine Intelligence
, vol.19
, pp. 153-158
-
-
Jain, A.1
Zonker, D.2
-
36
-
-
0017360990
-
The measurement of observer agreement for categorical data
-
Landis J, Koch G: The measurement of observer agreement for categorical data. Biometrics 1977, 33:159-74.
-
(1977)
Biometrics
, vol.33
, pp. 159-174
-
-
Landis, J.1
Koch, G.2
-
38
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush J: Microarray data normalization and transformation. Nat Genet. 2002, 32(Suppl):496-501.
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 496-501
-
-
Quackenbush, J.1
-
39
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber W, von Heydebreck A, Sultmann H, Poustka A, Vingron M: Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 2002, 18(Suppl 1):S96-104.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Huber, W.1
von Heydebreck, A.2
Sultmann, H.3
Poustka, A.4
Vingron, M.5
-
40
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang Y, Dudoit S, Luu P, Lin D, Peng V, Ngai J, Speed T: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 2002, 30(4):e15.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.4
-
-
Yang, Y.1
Dudoit, S.2
Luu, P.3
Lin, D.4
Peng, V.5
Ngai, J.6
Speed, T.7
-
41
-
-
4644222960
-
Exploratory differential gene expression analysis in microarray experiments with no or limited replication
-
Loguinov A, Mian I, Vulpe C: Exploratory differential gene expression analysis in microarray experiments with no or limited replication. Genome Biol. 2004, 5(3):R18.
-
(2004)
Genome Biol.
, vol.5
, Issue.3
-
-
Loguinov, A.1
Mian, I.2
Vulpe, C.3
-
42
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society 1995, 57:289-300.
-
(1995)
Journal of the Royal Statistical Society
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
43
-
-
84874651196
-
-
Supplementary Website
-
Supplementary Website [http://cic.cs.wustl.edu/CAGER/suppl.htm].
-
-
-
-
44
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison C, Gordon D, Lee T, Rinaldi N, Macisaac K, Danford T, Hannett N, Tagne J, Reynolds D, Yoo J, Jennings E, Zeitlinger J, Pokholok D, Kellis M, Rolfe P, Takusagawa K, Lander E, Gifford D, Fraenkel E, Young R: Transcriptional regulatory code of a eukaryotic genome. Nature 2004, 431:99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.1
Gordon, D.2
Lee, T.3
Rinaldi, N.4
Macisaac, K.5
Danford, T.6
Hannett, N.7
Tagne, J.8
Reynolds, D.9
Yoo, J.10
Jennings, E.11
Zeitlinger, J.12
Pokholok, D.13
Kellis, M.14
Rolfe, P.15
Takusagawa, K.16
Lander, E.17
Gifford, D.18
Fraenkel, E.19
Young, R.20
more..
-
45
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
Database issue
-
Harris M, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin G, Blake J, Bult C, Dolan M, Drabkin H, Eppig J, Hill D, Ni L, Ringwald M, Balakrishnan R, Cherry J, Christie K, Costanzo M, Dwight S, Engel S, Fisk D, Hirschman J, Hong E, Nash R, Sethuraman A, Theesfeld C, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee S, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz E, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R: The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 2004, 32 Database issue:D258-61.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Harris, M.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
Richter, J.11
Rubin, G.12
Blake, J.13
Bult, C.14
Dolan, M.15
Drabkin, H.16
Eppig, J.17
Hill, D.18
Ni, L.19
Ringwald, M.20
Balakrishnan, R.21
Cherry, J.22
Christie, K.23
Costanzo, M.24
Dwight, S.25
Engel, S.26
Fisk, D.27
Hirschman, J.28
Hong, E.29
Nash, R.30
Sethuraman, A.31
Theesfeld, C.32
Botstein, D.33
Dolinski, K.34
Feierbach, B.35
Berardini, T.36
Mundodi, S.37
Rhee, S.38
Apweiler, R.39
Barrell, D.40
Camon, E.41
Dimmer, E.42
Lee, V.43
Chisholm, R.44
Gaudet, P.45
Kibbe, W.46
Kishore, R.47
Schwarz, E.48
Sternberg, P.49
Gwinn, M.50
Hannick, L.51
Wortman, J.52
Berriman, M.53
Wood, V.54
de la Cruz, N.55
Tonellato, P.56
Jaiswal, P.57
Seigfried, T.58
White, R.59
more..
-
46
-
-
6044249965
-
Saccharomyces genome database: Underlying principles and organisation
-
Dwight S, Balakrishnan R, Christie K, Costanzo M, Dolinski K, Engel S, Feierbach B, Fisk D, Hirschman J, Hong E, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld C, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Weng S, Botstein D, Cherry J: Saccharomyces genome database: underlying principles and organisation. Brief Bioinform 2004, 5:9-22.
-
(2004)
Brief Bioinform
, vol.5
, pp. 9-22
-
-
Dwight, S.1
Balakrishnan, R.2
Christie, K.3
Costanzo, M.4
Dolinski, K.5
Engel, S.6
Feierbach, B.7
Fisk, D.8
Hirschman, J.9
Hong, E.10
Issel-Tarver, L.11
Nash, R.12
Sethuraman, A.13
Starr, B.14
Theesfeld, C.15
Andrada, R.16
Binkley, G.17
Dong, Q.18
Lane, C.19
Schroeder, M.20
Weng, S.21
Botstein, D.22
Cherry, J.23
more..
-
47
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks G, Hon G, Chandonia J, Brenner S: WebLogo: a sequence logo generator. Genome Res 2004, 14(6):1188-90.
-
(2004)
Genome Res.
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.1
Hon, G.2
Chandonia, J.3
Brenner, S.4
-
49
-
-
19044378214
-
Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray
-
Seki M, Ishida J, Narusaka M, Fujita M, Nanjo T, Umezawa T, Kamiya A, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, Yamaguchi-Shinozaki K, Carninci P, Kawai J, Hayashizaki Y, Shinozaki K: Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray. Funct Integr Genomics 2002, 2(6):282-91.
-
(2002)
Funct. Integr. Genomics
, vol.2
, Issue.6
, pp. 282-291
-
-
Seki, M.1
Ishida, J.2
Narusaka, M.3
Fujita, M.4
Nanjo, T.5
Umezawa, T.6
Kamiya, A.7
Nakajima, M.8
Enju, A.9
Sakurai, T.10
Satou, M.11
Akiyama, K.12
Yamaguchi-Shinozaki, K.13
Carninci, P.14
Kawai, J.15
Hayashizaki, Y.16
Shinozaki, K.17
-
50
-
-
0030267663
-
The rab16B promoter of rice contains two distinct abscisic acid-responsive elements
-
Ono A, Izawa T, Chua N, Shimamoto K: The rab16B promoter of rice contains two distinct abscisic acid-responsive elements. Plant Physiol 1996, 112(2):483-91.
-
(1996)
Plant Physiol.
, vol.112
, Issue.2
, pp. 483-491
-
-
Ono, A.1
Izawa, T.2
Chua, N.3
Shimamoto, K.4
-
51
-
-
0036008353
-
Experimentally determined sequence requirement of ACGT-containing abscisic acid response element
-
Hattori T, Totsuka M, Hobo T, Kagaya Y, Yamamoto-Toyoda A: Experimentally determined sequence requirement of ACGT-containing abscisic acid response element. Plant Cell Physiol 2002, 43:136-40.
-
(2002)
Plant Cell Physiol.
, vol.43
, pp. 136-140
-
-
Hattori, T.1
Totsuka, M.2
Hobo, T.3
Kagaya, Y.4
Yamamoto-Toyoda, A.5
-
52
-
-
0345164403
-
Characterization of a gene encoding an abscisic acid-inducible type-2 lipid transfer protein from rice
-
Garcia-Garrido J, Menossi M, Puigdomenech P, Martinez-Izquierdo J, Delseny M: Characterization of a gene encoding an abscisic acid-inducible type-2 lipid transfer protein from rice. FEBS Lett 1998, 428(3):193-9.
-
(1998)
FEBS Lett.
, vol.428
, Issue.3
, pp. 193-199
-
-
Garcia-Garrido, J.1
Menossi, M.2
Puigdomenech, P.3
Martinez-Izquierdo, J.4
Delseny, M.5
-
53
-
-
0031429747
-
Protein binding to the abscisic acid-responsive element is independent of VIVIPAROUS1 in vivo
-
Busk P, Pages M: Protein binding to the abscisic acid-responsive element is independent of VIVIPAROUS1 in vivo. Plant Cell 1997, 9(12):2261-70.
-
(1997)
Plant Cell
, vol.9
, Issue.12
, pp. 2261-2270
-
-
Busk, P.1
Pages, M.2
-
54
-
-
0031170825
-
Regulatory elements in vivo in the promoter of the abscisic acid responsive gene rab17 from maize
-
Busk P, Jensen A, Pages M: Regulatory elements in vivo in the promoter of the abscisic acid responsive gene rab17 from maize. Plant J 1997, 11(6):1285-95.
-
(1997)
Plant J.
, vol.11
, Issue.6
, pp. 1285-1295
-
-
Busk, P.1
Jensen, A.2
Pages, M.3
-
55
-
-
0030199209
-
Modular nature of abscisic acid (ABA) response complexes: Composite promoter units that are necessary and sufficient for ABA induction of gene expression in barley
-
Shen Q, Zhang P, Ho T: Modular nature of abscisic acid (ABA) response complexes: composite promoter units that are necessary and sufficient for ABA induction of gene expression in barley. Plant Cell 1996, 8(7):1107-19.
-
(1996)
Plant Cell
, vol.8
, Issue.7
, pp. 1107-1119
-
-
Shen, Q.1
Zhang, P.2
Ho, T.3
-
56
-
-
0025706143
-
A plant leucine zipper protein that recognizes an abscisic acid response element
-
Guiltinan M, WR JM, Quatrano R: A plant leucine zipper protein that recognizes an abscisic acid response element. Science 1990, 250(4978):267-71.
-
(1990)
Science
, vol.250
, Issue.4978
, pp. 267-271
-
-
Guiltinan, M.1
Guiltinan, W.R.J.M.2
Quatrano, R.3
-
57
-
-
0033197636
-
ACGT-containing abscisic acid response element (ABRE) and coupling element 3 (CE3) are functionally equivalent
-
Hobo T, Asada M, Kowyama Y, Hattori T: ACGT-containing abscisic acid response element (ABRE) and coupling element 3 (CE3) are functionally equivalent. Plant J 1999, 19(6):679-89.
-
(1999)
Plant J.
, vol.19
, Issue.6
, pp. 679-689
-
-
Hobo, T.1
Asada, M.2
Kowyama, Y.3
Hattori, T.4
-
58
-
-
0032918558
-
Plant cis-acting regulatory DNA elements (PLACE) database
-
Higo K, Ugawa Y, Iwamoto M, Korenaga T: Plant cis-acting regulatory DNA elements (PLACE) database. Nucleic Acids Res. 1999, 27:297-300.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 297-300
-
-
Higo, K.1
Ugawa, Y.2
Iwamoto, M.3
Korenaga, T.4
-
59
-
-
84874664597
-
-
Expression Connection
-
Expression Connection [http://db.yeastgenome.org/cgi-bin/expression/expressionConnection.pl].
-
-
-
-
60
-
-
84874663213
-
-
Saccharomyces cerevisiae ChIP-chip data
-
Saccharomyces cerevisiae ChIP-chip data [http://web.wi.mit.edu/young/regulator_network/].
-
-
-
-
61
-
-
84874655900
-
-
Known and putative regulatory motifs
-
Known and putative regulatory motifs [http://genepath.med.harvard.edu/~tpilpel/MotifList.html]
-
-
-
-
62
-
-
0041620271
-
Regulatory sequence analysis tools
-
van Helden J: Regulatory sequence analysis tools.
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.13
, pp. 3593-3596
-
-
van Helden, J.1
-
63
-
-
0012190262
-
Statistical approaches in Eukaryotic gene prediction
-
Edited by et al DB, John Wiley and Sons
-
Solovyev V: Statistical approaches in Eukaryotic gene prediction. In Handbook of Statistical genetics. Edited by et al DB, John Wiley and Sons 2001:83-127.
-
(2001)
Handbook of Statistical Genetics
, pp. 83-127
-
-
Solovyev, V.1
-
64
-
-
12344269924
-
GO::TermFinder - Pen source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
Boyle E, Weng S, Gollub J, Jin H, Botstein D, Cherry J, Sherlock G: GO::TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004, :D258-61.
-
(2004)
Bioinformatics
-
-
Boyle, E.1
Weng, S.2
Gollub, J.3
Jin, H.4
Botstein, D.5
Cherry, J.6
Sherlock, G.7
-
65
-
-
84874666292
-
-
Graphviz - Graph Visualization Software
-
Graphviz - Graph Visualization Software [http://www.research.att.com/sw/tools/graphviz/].
-
-
-
|