Phylogeny and biogeography of Thuja L. (Cupressaceae), an eastern Asian and North American disjunct genus

Journal of Integrative Plant Biology

Volumn 47, Issue 6, 2005, Pages 651-659

  Li, Jian Hua ^a   Xiang, Qiao Ping ^b  

^a HARVARD UNIVERSITY   (United States)

^b INSTITUTE OF BOTANY   (China)

Author keywords

Biogeography; Cupressaceae; Nuclear ribosomal DNA internal transcribed spacer; Phylogeny; Thuja

Indexed keywords

BIOGEOGRAPHY; GENETIC ANALYSIS; LAND BRIDGE; PHYLOGENY;

ASIA; EASTERN HEMISPHERE; EURASIA; NORTH AMERICA; WESTERN HEMISPHERE; WORLD;

CUPRESSACEAE; THUJA; THUJA KORAIENSIS; THUJA OCCIDENTALIS; THUJA PLICATA;

EID: 24944546384     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2005.00087.x     Document Type: Article

References (50)

1. Akhmetiev MA (1973). Sikhote-Alin Miocene flora (Botchi River). Geol Inst Tr Akad Nauk USSR 247, 1-124 (in Russian).
2. Axelrod DI, AL-Shehbaz I, Raven PH (1998). History of the modern flora of China. In: Zhang A, Wu S, eds. Floristic Characteristics and Diversity of East Asian Plants: Proceedings of the Proceedings of the First International Symposium on Floristic Characteristics and Diversity of East Asian Plants (1996). China Higher Education Press, Beijing. pp. 43-55.
3. Baum DA, Small RL, Wendel JF (1998). Biogeography and floral evolution of Baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets. Syst Biol 47, 181-207.
4. Bennike O (1990). The Kap Kobenhavn formation: Stratigraphy and paleobotany of a Plio-Pleistocene sequence in Peary Land, North Greenland. Meddelelser Gronland 23, 1-85.
5. Boufford DE (1998). Eastern Asian-North American plant disjunctions: Opportunities for further investigation. Kor J Plant Tax 28, 49-61.
6. Boufford DE, Spongberg SA (1983). Eastern Asian-Eastern North American phytogeographical relationships: A history from the time of Linnaeus to the twentieth century. Ann MO Bot Gard 70, 423-439.
7. Brunsfeld SJ, Soltis PS, Soltis DE et al. (1994). Phylogenetic relationships among the genera of Taxodiaceae and Cupressaceae: Evidence from rbcL sequences. Syst Bot 19, 253-262.
8. Cheng W, Fu L (1978). Flora Reipublicae Popularis Sinicae. Science Press, Beijing (in Chinese).
9. Cunningham CW, Collins TM (1994). Developing model systems for molecular biogeography: Vicariance and interchange in marine invertebrates. In: Schierwater B, Streit B, Wagner GP, Desalle R, eds. Molecular Ecology and Evolution: Approaches and Applications. Birkhäuser Verlag, Basel, Switzerland. pp. 405-433.
10. Donoghue MJ, Olmstead RG, Smith JF, Palmer JD (1992). Phylogenetic relationships of Dipsacales based on rbcL sequences. Ann MO Bot Gard 79, 333-345.
11. Donoghue MJ, Bell CD, Li JH (2001). Phylogenetic patterns in Northern Hemisphere plant geography. Int J Pl Sci 162 (Suppl.), S41-S52.
12. Farjon A (2001). World Checklist and Bibliography of Conifers. Royal Botanical Garden, Kew, UK.
13. Felsenstein J (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
14. Florin R (1963). The distribution of conifers and taxad genera in time and space. Acta Horticult Berg 20, 121-312.
15. Gadek PA, Alpers DL, Heslewood MM, Quinn CJ (2000). Relationships within Cupressaceae sensu lato: A combined morphological and molecular approach. Am J Bot 87, 1044-1057.
16. Gernandt DS, Liston A (1999). Internal transcribed spacer region evolution in Larix and Pseudotsuga (Pinaceae). Am J Bot 86, 711-723.
17. Graham A (1999). Late Cretaceous and Cenozoic History of North America Vegetation North of Mexico. Oxford University Press, New York.
18. Gray A (1846). Analogy between the flora of Japan and that of the United States. Am J Sci Arts Ser 2 2, 135-136.
19. Gray A (1859) Diagnostic characters of phanogamous plants, collected in Japan by Charles Wright, Botanist of the U. S. North Pacific Exploring Expedition, with observations upon the relations of the Japanese flora to that of North America, and of other parts of the northern temperate zone. Mem Am Acad Arts Sci NS 6, 377-453.
20. Hong DY (1993). Eastern Asian-North American disjunctions and their biological significance. Cathaya 5, 1-39.
21. Huelsenbeck JP, Rannala B (1997). Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276, 227-232.
22. Huzioka K, Uemura K (1973). The late Miocene Miyata flora of Akita Prefecture, northeast Honshu, Japan. Bull Natl Sci Mus Tokyo 18, 661-738.
23. Kusumi J, Tsumura Y, Yoshimaru H, Tachida H (2000). Phylogenetic relationships in Taxodiaceae and Cupressaceae sensu stricto based on matK gene, chlL gene, trnL-trnF IGS region, and trnL intron sequences. Am J Bot 87, 1480-1488.
24. LePage BA (2003). A new species of Thuja (Cupressaceae) from the Late Cretaceous of Alaska: Implications of being evergreen in a polar environment. Am J Bot 90, 167-174.
25. Li HL (1952). Floristic relationships between eastern Asia and eastern North America. Trans Am Philos Soc 42, 371-429.
26. Li JH, Bogle AL, Klein AS, Donoghue MJ (2000). Phylogeny and biogeography of Hamamelis (Hamamelidaceae). Harvard Pap Bot 5, 171-178.
27. Li JH, Davis CC, Del Tredici P, Donoghue MJ (2001a). Phylogeny and biogeography of Taxus (Taxaceae) inferred from sequences of the internal transcribed spacer region of nuclear ribosomal DNA. Harvard Pap Bot 6, 267-274.
28. Li JH, Davis CC, Donoghue MJ, Kelley S, Del Tredici P (2001b). Phylogenetic relationships of Torreya (Taxaceae) inferred from sequences of nuclear ribosomal DNA ITS region. Harvard Pap Bot 6, 275-281.
29. Li JH, Del Tredici P, Yang SX, Donoghue MJ (2002). Phylogenetic relationships and biogeography of Stewartia (Camellioideae, Theaceae) inferred from nuclear ribosomal DNA ITS sequences. Rhodora 104, 117-133.
30. Li JH, Zhang DL, Donoghue MJ (2003). Phylogeny and biogeography of Chamaecyparis (Cupressaceae) inferred from DNA sequences of the nuclear ribosomal ITS region. Rhodora 105, 106-117.
31. Liston A, Robinson WA, Oliphant JM (1996). Length variation in the nuclear ribosomal DNA internal transcribed spacer region of non-flowering seed plant. Syst Bot 21, 109-120.
32. Liston A, Robinson WA, Pinero D, Alvarez-Bully ER (1999). Phylogenetics of Pinus (Pinaceae) based on nuclear ribosomal DNA internal transcribed spacer region sequences. Mol Phylog Evol 11, 95-109.
33. Maddison WP (1990). A method for testing the correlated evolution of two binary characters: Are gains and losses concentrated on certain branches of a phylogenetic tree? Evolution 44, 539-557.
34. Manos PS, Stanford AM (2001). The historical biogeography of Fagaceae: Tracking the tertiary history of temperate and subtropical forests of the Northern Hemisphere. Int J Plant Sci 162, S77-S93.
35. McIver EE, Basinger JF (1989). The morphology and relationships of Thuja polaris sp. nov (Cupressaceae) from the Early Tertiary, Ellesmere Island, Arctic Canada. Can J Bot 67, 1903-1915.
36. Posada D, Crandall KA (1998). MODELTEST: Testing the model of DNA substitution. Bioinformatics 14, 817-818.
37. Quinn CJ, Price RA, Gadek PA (2002). Familial concepts and relationships in the conifers based on rbcL and matK sequence comparisons. Kew Bull 57, 513-531.
38. Schweitzer HJ (1974). Die "Tertiaren" Koniferen Spitzbergens. Paleontogräphica 149B, 1-89.
39. Swofford DL (2001). PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). Sinauer Associates, Sunderland, MA.
40. Tiffney BH (1985a). Perspectives on the origin of the floristic similarity between Eastern Asia and eastern North America. J Arnold Arb 66, 73-94.
41. Tiffney BH (1985b). The Eocene North Atlantic land bridge: Its importance in tertiary and modern phytogeography of the northern hemisphere. J Arnold Arb 66, 243-273.
42. Tiffney BH (2000). Geographic and climatic influence on the Cretaceous and Tertiary history of Euramerican floristic similarity. Acta Univ Carol Geol 44, 5-16.
43. Wen J (1999). Evolution of eastern Asian and eastern North American disjunct distributions in flowering plants. Annu Rev Ecol Syst 30, 421-455.
44. Wen J, Shi S (1999). A phylogenetic and biogeographic study of Hamamelis (Hamamelidaceae), an eastern Asian and eastern North American disjunct genus Biochem. Syst Ecol 27, 55-66.
45. White TJ, Bruns T, Lee S, Taylor J (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M, Gelfand D, Sninsky J, White T, eds. PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, CA. pp. 315-322.
46. Wolfe JA (1975). Some aspects of plant geography of the northern hemisphere during the Late Cretaceous and Tertiary. Ann MO Bot Gard 62, 264-279.
47. Wu CI (1983). On the significance of Pacific intercontinental discontinuity. Ann MO Bot Gard 70, 577-590.
48. Xiang QY, Soltis DE, Soltis PS (1998). The eastern Asian, eastern and western North American floristic disjunction: Congruent phylogenetic patterns in seven diverse genera. Mol Phylog Evol 10, 178-190.
49. Xiang QY, Soltis DE, Soltis PS, Manchester SR, Crawford DJ (2000). Timing the eastern Asian-eastern North American floristic disjunction: Molecular clock corroborates paleontological estimates. Mol Phylog Evol 15, 462-472.
50. Xiang QP, Farjon A, Li ZY, Fu LK, Liu ZY (2002). Thuja sutchuenensis: A rediscovered species of the Cupressaceae. Bot J Linn Soc 140, 93-93.