메뉴 건너뛰기




Volumn 96, Issue 4, 2005, Pages 647-660

Genome-wide analysis of transcript abundance and translation in arabidopsis seedlings subjected to oxygen deprivation

Author keywords

Arabidopsis thaliana; DNA microarray; Hypoxia; mRNA sequence features; Polysome; Translational control

Indexed keywords

ARABIDOPSIS PROTEIN; PLANT RNA; PRIMER DNA;

EID: 24744454639     PISSN: 03057364     EISSN: None     Source Type: Journal    
DOI: 10.1093/aob/mci217     Document Type: Article
Times cited : (248)

References (46)
  • 2
    • 0032918120 scopus 로고    scopus 로고
    • Selective translation of cytoplasmic mRNAs in plants
    • Bailey-Serres J. 1999. Selective translation of cytoplasmic mRNAs in plants. Trends in Plant Science 4: 142-148.
    • (1999) Trends in Plant Science , vol.4 , pp. 142-148
    • Bailey-Serres, J.1
  • 3
    • 0030265734 scopus 로고    scopus 로고
    • Both 5′ and 3′ sequences of maize adh1 mRNA are required to enhance translation under low oxygen
    • Bailey-Serres J, Dawe RK 1996. Both 5′ and 3′ sequences of maize adh1 mRNA are required to enhance translation under low oxygen. Plant Physiology 112: 685-695.
    • (1996) Plant Physiology , vol.112 , pp. 685-695
    • Bailey-Serres, J.1    Dawe, R.K.2
  • 4
    • 11944250236 scopus 로고
    • Hypoxic stress-induced changes in ribosomes of maize seedling roots
    • Bailey-Serres J, Freeling M. 1990. Hypoxic stress-induced changes in ribosomes of maize seedling roots. Plant Physiology 94: 1237-1243.
    • (1990) Plant Physiology , vol.94 , pp. 1237-1243
    • Bailey-Serres, J.1    Freeling, M.2
  • 5
    • 0037244732 scopus 로고    scopus 로고
    • Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in arabidopsis
    • Baxter-Burrell A, Chang R, Springer P, Bailey-Serres J. 2003. Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in arabidopsis. Annals of Botany 91: 129-141.
    • (2003) Annals of Botany , vol.91 , pp. 129-141
    • Baxter-Burrell, A.1    Chang, R.2    Springer, P.3    Bailey-Serres, J.4
  • 6
    • 0037076971 scopus 로고    scopus 로고
    • RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance
    • Baxter-Burrell A, Yang Z, Springer PS, Bailey-Serres J. 2002. RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance. Science 296: 2026-2028.
    • (2002) Science , vol.296 , pp. 2026-2028
    • Baxter-Burrell, A.1    Yang, Z.2    Springer, P.S.3    Bailey-Serres, J.4
  • 7
    • 1142306035 scopus 로고    scopus 로고
    • Structure and expression profile of the sucrose synthase multigene family in Arabidopsis
    • Baud S, Vaultier MN, Rochat C. 2004. Structure and expression profile of the sucrose synthase multigene family in Arabidopsis. Journal of Experimental Botany 55: 397-409.
    • (2004) Journal of Experimental Botany , vol.55 , pp. 397-409
    • Baud, S.1    Vaultier, M.N.2    Rochat, C.3
  • 9
    • 0036438894 scopus 로고    scopus 로고
    • Regulation of peptide-chain elongation in mammalian cells
    • Browne GJ, Proud CG. 2002. Regulation of peptide-chain elongation in mammalian cells. European Journal of Biochemistry 269: 5360-5368.
    • (2002) European Journal of Biochemistry , vol.269 , pp. 5360-5368
    • Browne, G.J.1    Proud, C.G.2
  • 10
    • 11944265276 scopus 로고
    • Hypoxic stress inhibits multiple aspects of the potato tuber wound response
    • Butler W, Cook L, Vayda ME. 1990. Hypoxic stress inhibits multiple aspects of the potato tuber wound response. Plant Physiology 93: 264-27.
    • (1990) Plant Physiology , vol.93 , pp. 264-327
    • Butler, W.1    Cook, L.2    Vayda, M.E.3
  • 11
    • 0034144393 scopus 로고    scopus 로고
    • Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a low-oxygen environment, and identification of proteins by mass spectrometry
    • Chang WWP, Huang L, Shen M, Webster C, Burlingame AL, Roberts JKM. 2000. Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a low-oxygen environment, and identification of proteins by mass spectrometry. Plant Physiology 122: 95-317.
    • (2000) Plant Physiology , vol.122 , pp. 95-317
    • Chang, W.W.P.1    Huang, L.2    Shen, M.3    Webster, C.4    Burlingame, A.L.5    Roberts, J.K.M.6
  • 14
    • 0037239014 scopus 로고    scopus 로고
    • Plant haemoglobins, nitric oxide and hypoxic stress
    • Dordas C, Rivoal J, Hill RD. 2003. Plant haemoglobins, nitric oxide and hypoxic stress. Annals of Botany 91: 173-178.
    • (2003) Annals of Botany , vol.91 , pp. 173-178
    • Dordas, C.1    Rivoal, J.2    Hill, R.D.3
  • 15
    • 0347981309 scopus 로고    scopus 로고
    • Oxygen deficiency and root metabolism: Injury and acclimation under hypoxia and anoxia
    • Drew MC. 1997. Oxygen deficiency and root metabolism: injury and acclimation under hypoxia and anoxia. Annual Review of Plant Physiology and Plant Molecular Biology 48: 223-250.
    • (1997) Annual Review of Plant Physiology and Plant Molecular Biology , vol.48 , pp. 223-250
    • Drew, M.C.1
  • 16
    • 0029136453 scopus 로고
    • Post-transcriptional regulation of gene expression in oxygen-deprived roots of maize
    • Fennoy SL, Bailey-Serres J. 1995. Post-transcriptional regulation of gene expression in oxygen-deprived roots of maize. The Plant Journal 7: 287-295.
    • (1995) The Plant Journal , vol.7 , pp. 287-295
    • Fennoy, S.L.1    Bailey-Serres, J.2
  • 18
    • 0031658611 scopus 로고    scopus 로고
    • Transcriptional and post-transcriptional processes regulate gene expression in oxygen-deprived roots of maize
    • Fennoy SL, Nong T, Bailey-Serres J. 1998. Transcriptional and post-transcriptional processes regulate gene expression in oxygen-deprived roots of maize. The Plant Journal 15: 727-735.
    • (1998) The Plant Journal , vol.15 , pp. 727-735
    • Fennoy, S.L.1    Nong, T.2    Bailey-Serres, J.3
  • 19
    • 4444368410 scopus 로고    scopus 로고
    • Plant responses to hypoxia - Is survival a balancing act?
    • Fukao T, Bailey-Serres J. 2004. Plant responses to hypoxia - is survival a balancing act? Trends in Plant Science 9: 449-456.
    • (2004) Trends in Plant Science , vol.9 , pp. 449-456
    • Fukao, T.1    Bailey-Serres, J.2
  • 21
    • 0037795742 scopus 로고    scopus 로고
    • Response of plant metabolism to too little oxygen
    • Geigenberger P. 2003. Response of plant metabolism to too little oxygen. Current Opinion in Plant Biology 6: 247-256.
    • (2003) Current Opinion in Plant Biology , vol.6 , pp. 247-256
    • Geigenberger, P.1
  • 25
    • 13944270653 scopus 로고    scopus 로고
    • mRNA sequence features responsible for translational regulation in Arabidopsis
    • Kawaguchi R, Bailey-Serres, J. 2005. mRNA sequence features responsible for translational regulation in Arabidopsis. Nucleic Acids Research 33: 955-965.
    • (2005) Nucleic Acids Research , vol.33 , pp. 955-965
    • Kawaguchi, R.1    Bailey-Serres, J.2
  • 26
    • 2542642407 scopus 로고    scopus 로고
    • Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana
    • Kawaguchi R, Girke T, Bray EA, Bailey-Serres J. 2004. Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. The Plant Journal 38: 823-839.
    • (2004) The Plant Journal , vol.38 , pp. 823-839
    • Kawaguchi, R.1    Girke, T.2    Bray, E.A.3    Bailey-Serres, J.4
  • 28
    • 0033969179 scopus 로고    scopus 로고
    • Multiple paths of sugar-sensing and a sugar/oxygen overlap of genes of sucrose and ethanol metabolism
    • Koch KE, Ying Z, Wu Y, Avigne WT. 2000. Multiple paths of sugar-sensing and a sugar/oxygen overlap of genes of sucrose and ethanol metabolism. Journal of Experimental Botany 51: 417-427.
    • (2000) Journal of Experimental Botany , vol.51 , pp. 417-427
    • Koch, K.E.1    Ying, Z.2    Wu, Y.3    Avigne, W.T.4
  • 29
    • 0029893038 scopus 로고    scopus 로고
    • Intron-specific stimulation of anaerobic gene expression and splicing efficiency in maize cells
    • Köhler U, Donath M, Mendel RR, Cerff R, Hehl R. 1996. Intron-specific stimulation of anaerobic gene expression and splicing efficiency in maize cells. Molecular and General Genetics 251: 252-258.
    • (1996) Molecular and General Genetics , vol.251 , pp. 252-258
    • Köhler, U.1    Donath, M.2    Mendel, R.R.3    Cerff, R.4    Hehl, R.5
  • 30
    • 0038119929 scopus 로고    scopus 로고
    • The pyruvate decarboxylasel gene of Arabidopsis is required during anoxia but not other environmental stresses
    • Kursteiner O, Dupuis I, Kuhlemeier C. 2003. The pyruvate decarboxylasel gene of Arabidopsis is required during anoxia but not other environmental stresses. Plant Physiology 132: 968-978.
    • (2003) Plant Physiology , vol.132 , pp. 968-978
    • Kursteiner, O.1    Dupuis, I.2    Kuhlemeier, C.3
  • 31
    • 0014202544 scopus 로고
    • Dissociation and reassembly of polyribosomes in relation to protein synthesis in the soybean root
    • Lin CY, Key JL. 1967. Dissociation and reassembly of polyribosomes in relation to protein synthesis in the soybean root. Journal of Molecular Biology 26: 237-247.
    • (1967) Journal of Molecular Biology , vol.26 , pp. 237-247
    • Lin, C.Y.1    Key, J.L.2
  • 32
    • 20444462441 scopus 로고    scopus 로고
    • Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis
    • Liu F, Vantoai T, Moy LP, Bock G, Linford LD, Quackenbush J. 2005. Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis. Plant Physiology 137: 1115-1129.
    • (2005) Plant Physiology , vol.137 , pp. 1115-1129
    • Liu, F.1    Vantoai, T.2    Moy, L.P.3    Bock, G.4    Linford, L.D.5    Quackenbush, J.6
  • 33
    • 20444493630 scopus 로고    scopus 로고
    • A genome-wide analysis of the effects of sucrose on gene expression in Arabidopsis seedlings under anoxia
    • Loreti E, Poggi A, Novi G, Alpi A, Perata P. 2005. A genome-wide analysis of the effects of sucrose on gene expression in Arabidopsis seedlings under anoxia. Plant Physiology 137: 1130-1138.
    • (2005) Plant Physiology , vol.137 , pp. 1130-1138
    • Loreti, E.1    Poggi, A.2    Novi, G.3    Alpi, A.4    Perata, P.5
  • 35
    • 4544230849 scopus 로고    scopus 로고
    • Changes in the mitochondrial proteome during the anoxia to air transition in rice focus around cytochrome-containing respiratory complexes
    • Millar AH, Trend AE, Heazlewood JL. 2004. Changes in the mitochondrial proteome during the anoxia to air transition in rice focus around cytochrome-containing respiratory complexes. Journal of Biological Chemistry 279: 39471-39478.
    • (2004) Journal of Biological Chemistry , vol.279 , pp. 39471-39478
    • Millar, A.H.1    Trend, A.E.2    Heazlewood, J.L.3
  • 37
    • 0344758983 scopus 로고    scopus 로고
    • Starting the protein synthesis machine: Eukaryotic translation initiation
    • Preiss T, Hentze MW. 2003. Starting the protein synthesis machine: eukaryotic translation initiation. BioEssays 25: 1201-1211.
    • (2003) BioEssays , vol.25 , pp. 1201-1211
    • Preiss, T.1    Hentze, M.W.2
  • 38
    • 0345602742 scopus 로고    scopus 로고
    • Homo-directional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock
    • Preiss T, Baron-Benhamou J, Ansorge W, Hentze MW. 2003. Homo-directional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock. Nature Structural Biology 10: 1039-1047.
    • (2003) Nature Structural Biology , vol.10 , pp. 1039-1047
    • Preiss, T.1    Baron-Benhamou, J.2    Ansorge, W.3    Hentze, M.W.4
  • 39
    • 2342501846 scopus 로고    scopus 로고
    • Development and evaluation of an Arabidopsis whole genome Affymetrix probe array
    • Redman JC, Haas BJ, Tanimoto G, Town CD. 2004. Development and evaluation of an Arabidopsis whole genome Affymetrix probe array. The Plant Journal 38: 545-561.
    • (2004) The Plant Journal , vol.38 , pp. 545-561
    • Redman, J.C.1    Haas, B.J.2    Tanimoto, G.3    Town, C.D.4
  • 40
    • 1642564552 scopus 로고    scopus 로고
    • The zinc finger protein Zatl2 is required for cytosolic ascorbate peroxidase 1 expression during oxidative stress in Arabidopsis
    • Rizhsky L, Davletova S, Liang H, Mittler R. 2004. The zinc finger protein Zatl2 is required for cytosolic ascorbate peroxidase 1 expression during oxidative stress in Arabidopsis. Journal of Biological Chemistry 279: 11736-11743.
    • (2004) Journal of Biological Chemistry , vol.279 , pp. 11736-11743
    • Rizhsky, L.1    Davletova, S.2    Liang, H.3    Mittler, R.4
  • 41
    • 0018869288 scopus 로고
    • The anaerobic proteins of maize
    • Sachs MM, Freeling M, Okimoto R. 1980. The anaerobic proteins of maize. Cell 20: 761-767.
    • (1980) Cell , vol.20 , pp. 761-767
    • Sachs, M.M.1    Freeling, M.2    Okimoto, R.3
  • 43
    • 19044378214 scopus 로고    scopus 로고
    • Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray
    • Seki M, Ishida J, Narusaka M, Fujita M, Nanjo T, Umezawa T, et al. 2002. Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray. Functional and Integrative Genomics 2: 282-291.
    • (2002) Functional and Integrative Genomics , vol.2 , pp. 282-291
    • Seki, M.1    Ishida, J.2    Narusaka, M.3    Fujita, M.4    Nanjo, T.5    Umezawa, T.6
  • 46
    • 0024477261 scopus 로고
    • On finding all suboptimal foldings of an RNA molecule
    • Zuker M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244: 48-52.
    • (1989) Science , vol.244 , pp. 48-52
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.