Transcriptional and post-transcriptional processes regulate gene expression in oxygen-deprived roots of maize

Plant Journal

Volumn 15, Issue 6, 1998, Pages 727-735

  Fennoy, Sheila L ^a   Nong, Thoa ^a   Bailey Serres, Julia ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AEROBIC METABOLISM; GENE EXPRESSION REGULATION; HYPOXIA; MESSENGER RNA; PLANT GENETICS; PROTEIN EXPRESSION; RIBOSOME; STRESS TOLERANCE;

ZEA MAYS;

EID: 0031658611     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1998.00249.x     Document Type: Article

References (61)

1. Abler, M.L. and Green, P.J. (1996) Control of mRNA stability in higher plants. Plant Mol. Biol. 32, 63-78.
2. Bailey-Serres, J. and Dawe, R.K. (1996) Both 5′ and 3′ sequences of maize adh1 mRNA are required to enhance translation under low oxygen. Plant Physiol. 112, 685-695.
3. Bailey-Serres, J., Kloeckener-Gruissem, B. and Freeling, M. (1988) Genetic and molecular approaches to the study of the anaerobic response and tissue specific gene expression in maize. Plant Cell Environ. 11, 351-357.
4. Bailey-Serres, J., Vangala, S., Szick, K. and Lee, C.-H.K. (1997) Acidic phosphoprotein complex of the 60S ribosomal subunit of maize seedling roots: components, and changes in response to flooding. Plant Physiol. 114, 1293-1305.
5. Baker, A. and Leaver, C.J. (1985) Isolation and sequence analysis of a cDNA encoding the ATP/ADP translocator of Zea mays L. Nucl. Acids Res. 13, 5857-5867.
6. Butler, W., Cook, L. and Vayda, M.E. (1990) Hypoxic stress inhibits multiple aspects of the potato tuber wound response. Plant Physiol. 93, 265-270.
7. Caponigro, G., Muhlrad, D. and Parker, R. (1993) A small segement of the MATa1 transcript promotes mRNA decay in Saccharomyces cerevisiae: a stimulatory role for rare codons. Mol. Cell Biol. 13, 5141-5148.
8. Chomczynski, P. and Sacchi, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156-159.
9. Christensen, A.H. and Quail, P.H. (1989) Sequence analysis and transcriptional regulation by heat shock of polyubiquitin transcripts from maize. Plant Mol. Biol. 12, 619-632.
10. Crosby, J.S. and Vayda, M.E. (1991) Stress-induced translational control in potato tubers may be mediated by polysome-associated proteins. Plant Cell, 3, 1013-1023.
11. Dennis, E.S., Gerlach, W.L., Pryor, A.J., Bennetzen, J.L., Inglis, A., Lewellyn, D., Sachs, M.M., Ferl, R.J. and Peacock, W.J. (1984) Molecular analysis of the alcohol dehydrogenase 1 (Adh1)gene of maize. Nucl. Acids Res. 12, 3983-4000.
12. Dennis, E.S., Gerlach, W.L., Walker, J.C., Lavin, M. and Peacock, W.J. (1988) Anaerobically regulated aldolase gene of maize: A chimeric origin? J. Mol. Biol. 202, 759-767.
13. Dennis, E.S., Sachs, M.M., Gerlach, W.L., Finnegan, E.J. and Peacock, W.J. (1985) Molecular analysis of the alcohol dehydrogenase 2 (Adh2) gene of maize. Nucl. Acids Res. 13, 727-743.
14. Dickey, L.F., Nguyen, T.-T., Allen, G.C. and Thompson, W.F. (1994) Light modulation of ferredoxin mRNA abundance requires and open reading frame. Plant Cell, 6, 1171-1176.
15. Dolferus, R., Ellis, M., DeBruxelles, G., Trevaskis, B., Hoeren, F., Dennis, E.S. and Peacock, W.J. (1997) Strategies of gene action in Arabidopsis during hypoxia. Ann. Bot. 79 (Suppl. A), 21-31.
16. Drew, M.C. (1997) Oxygen deficiency and root metabolism: Injury and acclimation under hypoxia and anoxia. Annu, Rev. Plant Physiol. Plant Mol Biol. 48, 223-250.
17. Evdokimova, V.M., Kovrigina, E.A., Nashchekin, D.V., Davydova, E.K., Hershey, J.W. and Ovchinnikow, L.P. (1998) The major core protein of messenger ribonucleoprotein particles (p50) promotes initiation of protein biosynthesis in vitro. J. Biol. Chem. 273, 3574-3581.
18. Fennoy, S.L. and Bailey-Serres, J. (1995) Posttranscriptional regulation of gene expression in oxygen-deprived roots of maize. Plant J. 7, 287-295.
19. Gallie, D.R. (1993) Posttranscriptional regulation of gene expression in plants. Ann. Rev. Plant Physiol. Plant Mol. Biol. 44, 77-105.
20. Gerlach, E.L., Pryor, A.J., Dennis, E.S., Ferl, R.J., Sachs, M.M. and Peacock, W.J. (1982) cDNA cloning and induction of the alcohol dehydrogenase gene (Adh1) of maize. Proc. Natl Acad. Sci. USA, 79, 2981-2985.
21. Glisin, V., Crkvenjakov, V, and Byus, C. (1974) Ribonucleic acid isolation by cesium chloride centrifugation. Biochemistry, 13, 2633-2637.
22. Green, P.J. (1993) Control of mRNA stability in higher plants. Plant Physiol. 102, 1065-1070.
23. Gupta, M., Chourey, P.S., Burr, B. and Still, P.E. (1988) cDNAs of two non-allelic sucrose synthase genes in maize: cloning, expression, characterization and molecular mapping of the sucrose synthase-2 gene. Plant Mol. Biol. 10, 215-224.
24. Hake, S., Kelley, P.M., Taylor, W.C. and Freeling, M. (1985) Coordinate induction of alcohol dehydrogenase 1, aldolase, and other anaerobic RNAs in maize. J. Biol. Chem. 260, 5050-5054.
25. Ho, T.-H.D. and Sachs, M.M. (1989) Stress-induced proteins: characterization and the regulation of their synthesis. In The Biochemistry of Plants, Vol. 15. Molecular Biology (Marcus, A., ed). San Diego: Academic Press, pp. 347-378.
26. Jayachandran, S. and Bailey-Serres, J. (1995) Nucleotide sequence of a cDNA for the Zea mays protein synthesis initiation factor 4A. Plant Physiol. 108, 1317-1318.
27. Johnson, M.A., Baker, E.J., Colbert, J.T. and Green, P.J. (1998) Determinants of mRNA stability in plants. In A Look Beyond Transcription: Mechanisms Determining mRNA Stability and Translation in Plants (Bailey-Serres, J. and Gallie, D.R., eds). Rockville, MD: American Society of Plant Physiologists, pp. 40-53.
28. Kelley, P.M. and Freeling, M. (1984) Anaerobic expression of maize fructose-1,6-diphosphate aldolase. J. Biol. Chem. 259, 14180-14183.
29. Kennedy, R.A., Rumpho, M.E. and Fox, T.C. (1992) Anaerobic metabolism in plants. Plant Physiol. 100, 1-6.
30. Lal, S.K., Johnson, S., Conway, T. and Kelley, P.M. (1991) Characterization of a maize cDNA that complements an enolase-deficient mutant of Escherichia coli Plant Mol. Biol. 16, 787-795.
31. Lal, S.K., Kelley, P.M. and Elthon, T.E. (1994) Purification and differential expression of enolase from maize. Physiol. Plantar. 91, 587-592.
32. Manjunath, S. and Sachs, M.M. (1997) Molecular characterization and promoter analysis of the maize cytosolic glyceraldehyde 3-phosphate dehydrogenase gene family and its expression during anoxia. Plant Mol. Biol. 33, 97-112.
33. McCarty, D.R., Shaw, J.R. and Hannah, L.C. (1986) The cloning, genetic mapping and expression of the constitutive sucrose synthase locus of maize. Proc. Natl Acad. Sci. USA, 83, 9099-9103.
34. McElfresh, K. and Chourey, P. (1988) Anaerobiosis induces transcription but not translation of sucrose synthase in maize. Plant Physiol. 87, 542-546.
35. Mehdy, M.C. and Brodl, M.R. (1998) The role of stress in regulating mRNA stability. In A Look Beyond Transcription: Mechanisms Determining mRNA Stability and Translation in Plants (Bailey-Serres, J. and Gallie, D.R., eds). Rockville, MD: American Society of Plant Physiologists, pp. 54-63.
36. Nover, L., Scharf, K.-D. and Neumann, D. (1989) Cytoplasmic heat shock granules are formed from precursor particles and are associated with a specific set of mRNAs. Mol. Cell Biol. 9, 1298-1308.
37. Paul, A.-L. and Ferl, R.J. (1991a) Adh1 and Adh2 regulation. Maydica, 36, 129-134.
38. Paul, A.-L. and Ferl, R.J. (1991b) In vivo footprinting reveals unique cis-alements and different modes of hypoxic induction in maize Adh1 and Adh2. Plant Cell, 3, 159-168.
39. Paul, A.-L. and Ferl, R.J. (1997) The hypoxic response of three alcohol dehydrogenase genes: In vivo and in vitro footprinting of DNA/protein interactions describes multiple signalling connections. Ann. Bot. 78, 33-37.
40. Peschke, V.M. and Sachs, M.M. (1993) Multiple maize pyruvate decarboxylase genes are induced by hypoxia. Mol. Gen. Genet. 240, 206-212.
41. Redinbaugh, M.G., Wadsworth, G.J. and Scandalios, J.G. (1988) Characterization of catalase transcripts and their differential expression in maize. Biochim. Biophys. Acta, 951, 104-116.
42. Ricard, B., Couẃe, I., Raymond, P., Saglio, P.M., Saint-Ges, V. and Pradet, A. (1994) Plant metabolism under hypoxia and anoxia. Plant Physiol. Biochem. 32, 1-10.
43. Rivoal, J., Thind, S., Pradet, A. and Richard, B. (1997) Differential induction of pyruvate decarboxylase subunits and transcripts in anoxic rice seedlings. Plant Physiol. 114, 1021-1029.
44. Rowland, L.J., Chen, Y.-C. and Chourey, P.S. (1989) Anaerobic treatment alters the cell specific expression of Adh-1, Sh, and Sus genes in roots of maize seedlings. Mol. Gen. Genet. 218, 33-40.
45. Rowland, L.J. and Strammer, J.N. (1986) Anaerobic treatment of maize roots affects transcription of Adh1 and transcript stability. Mol. Cell Biol. 6, 3368-3372.
46. Russell, D.A. and Sachs, MM (1991) Differential expression and sequence analysis of the maize glyceraldehyde-3-phosphate dehydrogenase gene family. Plant Cell, 1, 793-803.
47. Russell, D.A., Wong, D.M.-L and Sachs, M.M. (1990) The anaerobic response of soybean. Plant Physiol. 92, 401-407.
48. Sachs, MM, Freeling, M. and Okimoto, R. (1980) The anaerobic proteins of maize. Cell, 20, 761-767.
49. Sachs, M.M., Subbaiah, C.C. and Saab, I.N. (1996) Anaerobic gene expression and flooding tolerance in maize. J. Exp. Bot. 47, 1-15.
50. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
51. Shah, D.M., Hightower, R.C. and Meagher, R.B. (1983) Genes encoding actin in higher plants: Intron positions are highly conserved but the coding sequences are not. J. Mol. Appl. Genet. 2, 111-126.
52. Skadsen, R.W. and Scandalios, J.G. (1987) Translational control of photo-induced expression of the Cat2 catalase gene during leaf development in maize. Proc. Natl Acad. Sci. USA, 84, 2785-2789.
53. Springer, B., Werr, W., Starlinger, P., Bennett, D.C., Zokolica, M. and Freeling, M. (1986) The shunken gene of chromosome 9 of Zea mays L. is expressed in various plant tissues and encodes an anaerobic protein. Mol. Gen. Genet. 205, 461-468.
54. Szick, K., Springer, M. and Bailey-Serres, J. (1998) Evolutionary analyses of the 12 kDa acidic ribosomal P-proteins reveal a distinct protein of higher plant ribosomes. Proc. Natl Acad. Sci. USA, 95, in press.
55. Taliercio, E.W. and Chourey, P.S. (1989) Post-transcriptional control of sucrose synthase expression in anaerobic seedlings of maize. Plant Physiol. 90, 1359-1364.
56. Vogel, J., Fowler, J. and Freeling, M. (1989) Detailed analysis of the aerobic and anaerobic tissue distribution of ADH1 activity in the primary root. Maize Genet. Coop. Newslett. 63, 35-36.
57. Vogel, J. and Freeling, M. (1992) An anaerobic gene, which encodes an apparently non-glycolytic protein, shares sequence homology with Mu1,7 and Mu related sequence-A. Maize Genet. Coop. Newsl. 66, 21-22.
58. Webster. C., Kim, C.-Y. and Roberts, J.K.M. (1991) Elongation and termination reactions of protein synthesis on maize root tip polysomes studied in a homologous cell-free system. Plant Physiol. 96, 418-425.
59. Winning, B.M., Sarah, C.J., Purdue, P.E., Day, C.D. and Leaver, C.J. (1992) The adenine nucleotide translocator of higher plants in synthesized as a larger precursor that is processed upon import into mitochondria. Plant J. 2, 763-773.
60. Zeng, Y., Wu, Y., Avigne, W. and Koch, K. (1998) Hypoxia and anoxia induce different sugar-sensitive sucrose synthases via complementrary transcriptional and post-transcriptional mechanisms. Plant Physiol. 116, 1573-1583.
61. Zhang, S., Sheng, J., Lui, Y. and Mehdy, M.C. (1993) Fungal elicitor-induced bean praline-rich protein mRNA down-regulation is due to destabilization that is transcription and translation dependent. Plant Cell, 5, 1089-1099.