Enhancing the anaerobic response

Annals of Botany

Volumn 91, Issue SPEC. ISS. JAN., 2003, Pages 111-117

  Dolferus, Rudy ^a   Klok, Erik Jan ^a   Delessert, Christian ^a   Wilson, Sarah ^a   Ismond, Kathleen P ^b   Good, Allen G ^b   Peacock, W James ^a   Dennis, Elizabeth S ^a  

^a CSIRO   (Australia)

^b UNIVERSITY OF ALBERTA   (Canada)

Author keywords

Anaerobiosis; Arabidopsis thaliana; Gene expression; Gene manipulation; Microarrays; Review

Indexed keywords

ANAEROBIOSIS; GENE EXPRESSION; PHYSIOLOGICAL RESPONSE;

ADAPTATION, PHYSIOLOGICAL; ANAEROBIOSIS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; FERMENTATION; GENES, PLANT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; TRANS-ACTIVATORS; WATER;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 0037244945     PISSN: 03057364     EISSN: None     Source Type: Journal    
DOI: 10.1093/aob/mcf048     Document Type: Review

References (63)

1. Aoyama T, Chua NH. 1997. A glucocorticoid-mediated transcriptional induction system in transgenic plants. Plant Journal 11: 605-612.
2. Bailey-Serres J, Dawe RK. 1996. Both 5′ and 3′ sequences of maize adh1 mRNA are required for enhanced translation under low-oxygen conditions. Plant Physiology 112: 685-695.
3. Bailey-Serres J, Rochaix JD, Wassenegger M, Filipowicz W. 1999. Plants, their organelles, viruses and transgenes reveal the mechanisms and relevance of post-transcriptional processes. EMBO Journal 18: 5153-5158.
4. Berberich T, Kusano T. 1997. Cycloheximide induces a subset of low temperature-inducible genes in maize. Molecular and General Genetics 254: 257-283.
5. Chan MT, Yu SM. 1998. The 3′ untranslated region of a rice α-amylase gene functions as a sugar-dependent mRNA stability determinant. Proceedings of the National Academy of Sciences of the USA 95: 6543-6547.
6. Chang WW, Huang L, Shen M, Webster C, Burlingame AL, Roberts JKM. 2000. Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a low-oxygen environment, and identification of proteins by mass spectrometry. Plant Physiology 122: 295-318.
7. Cheung VG, Morley M, Aguilar F, Massimi A, Kucherlapati R, Childs G. 1999. Making and reading microarrays. Nature Genetics 21: 15-19.
8. Clough SJ, Bent AF. 1998. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant Journal 16: 735-743.
9. de Bruxelles GL, Peacock WJ, Dennis ES, Dolferus R. 1996. Abscisic acid induces the alcohol dehydrogenase gene in Arabidopsis. Plant Physiology 111: 381-391.
10. Dennis ES, Dolferus R, Ellis M, Rahman M, Wu Y, Hoeren FU, Grover A, Ismond KP, Good AG, Peacock WJ. 2000. Molecular strategies for improving waterlogging tolerance in plants. Journal of Experimental Botany 51: 89-97.
11. Dickey LF, Petracek ME, Nguyen TT, Hansen ER, Thompson WF. 1998. Light regulation of Fed-1 mRNA requires an element in the 5′ untranslated region and correlates with differential polyribosome association. Plant Cell 10: 475-484.
12. Dolferus R, Jacobs M, Peacock WJ, Dennis ES. 1994. Differential interactions of promoter elements in stress responses of the Arabidopsis Adh gene. Plant Physiology 105: 1075-1087.
13. Dolferus R, Klok EJ, Ismond KP, Delessert C, Wilson S, Good AG, Peacock WJ, Dennis ES. 2000. Molecular basis of the anaerobic response in plants. IUBMB Life 51: 79-82.
14. Duggan DJ, Bittner M, Chen Y, Meltzer P, Trent JM. 1999. Expression profiling using cDNA microarrays. Nature Genetics 21: 10-14.
15. Ellis MH, Setter TL. 1999. Hypoxia induces anoxia tolerance in completely submerged rice seedlings. Journal of Plant Physiology 154: 219-230.
16. Ellis MH, Dennis ES, Peacock WJ. 1999. Arabidopsis roots and shoots have different mechanisms for hypoxic stress tolerance. Plant Physiology 119: 57-64.
17. Fen Z, Daniel TO. 1991. 5′ untranslated sequences determine degradative pathway for alternate PDGF B/c-sis mRNAs. Oncogene 6: 953-959.
18. Fennoy SL, Nong T, Bailey-Serres J. 1998. Transcriptional and post-transcriptional processes regulate expression in oxygen-deprived roots of maize. Plant Journal 15: 727-735.
19. Gallie DR, Bailey-Serres J. 1997. Eyes off transcription! The wonderful world of post-transcriptional regulation. Plant Cell 9: 667-673.
20. Gil P, Green PJ. 1996. Multiple regions of the Arabidopsis SAUR-AC1 gene control transcript abundance: the 3′ untranslated region functions as an mRNA instability determinant. EMBO Journal 15: 1678-1686.
21. Hanson AD, Rathinasabapathi B, Rivoal J, Burnet M, Dillon MO, Gage DA. 1994. Osmoprotective compounds in the Plumbaginaceae: a natural experiment in metabolic engineering of stress tolerance. Proceedings of the National Academy of Sciences of the USA 91: 306-310.
22. Hehl R, Wingender E. 2001. Database-assisted promoter analysis. Trends in Plant Science 6: 251-255.
23. Henn W. 1999. Genetic screening with the DNA chip: A new Pandora's box? Journal of Medical Ethics 25: 200-203.
24. Hoeren F, Dolferus R, Wu Y, Peacock WJ, Dennis ES. 1998. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase (ADHI) gene by low oxygen. Genetics 149: 479-490.
25. Horvath DM, Huang DJ, NH, Chua NH. 1998. Four classes of salicylate-induced tobacco genes. Molecular Plant-Microbe Interactions 11: 895-905.
26. Huang J, Hirji R, Adam L, Rozwadowski KL, Hammerlindl JK, Keller WA, Selvaraj G. 2000. Genetic engineering of glycinebetaine production toward enhancing stress tolerance in plants: Metabolic limitations. Plant Physiology 122: 747-756.
27. Iuchi S, Kobayashi M, Taji T, Naramoto M, Seki M, Kato T, Tabata S, Kakubari Y, Yamaguchi-Shinozaki K, Shinozaki K. 2001. Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis. Plant Journal 27: 325-333.
28. Jaglo-Ottosen KR, Gilmour SJ, Zarka DG, Schabenberger O, Thomashow MF. 1998. Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science 280: 104-106.
29. Johnson MA, Perez-Amador MA, Lidder P, Green PJ. 2000. Mutants of Arabidopsis defective in a sequence-specific mRNA degradation pathway. Proceedings of the National Academy of Sciences of the USA 97: 13991-13996.
30. Jordan BR. 1998. Large-scale expression measurement by hybridization methods: from high-density membranes to 'DNA chips'. Journal of Biochemistry 124: 251-258.
31. Kang HG, Fang Y, Singh KB. 1999. A glucocorticoid-inducible transcription system causes severe growth defects in Arabidopsis and induces defence-related genes. Plant Journal 20: 127-133.
32. Kelley PM. 1989. Maize pyruvate decarboxylase mRNA is induced anaerobically. Plant Molecular Biology 13: 213-222.
33. Kelley PM, Freeling M. 1984a. Anaerobic expression of maize fructose-1,6-diphosphate aldolase. Journal of Biological Chemistry 259: 14180-14183.
34. Kelley PM, Freeling M. 1984b. Anaerobic expression of maize glucose phosphate isomerase. Journal of Biological Chemistry 259: 673-677.
35. Kennedy RA, Rumpho ME, Fox TC. 1992. Anaerobic metabolism in plants. Plant Physiology 84: 1204-1209.
36. Marchant A, Bennett MJ. 1998. The Arabidopsis AUX1 gene: a model system to study mRNA processing in plants. Plant Molecular Biology 36: 463-471.
37. Memon AR, Meng B, Mullet JE. 1996. RNA-binding proteins of 37/38 kDa bind specifically to the barley chloroplast psbA 3′-end untranslated RNA. Plant Molecular Biology 30: 1195-1205.
38. Olson DC, Oetiker JH, Yang SF. 1995. Analysis of LE-ACS3, a 1-aminocyclopropane-1-carboxylic acid synthase gene expressed during flooding in the roots of tomato plants. Journal of Biological Chemistry 270: 14056-14061.
39. Otani Y, Quinones S, Saus J, Kurkinen M, Harris ED. 1990. Cycloheximide induces stromelysin mRNA in cultured human fibroblasts. European Journal of Biochemistry 192: 75-79.
40. Peppel K, Vinci JM, Baglioni C. 1991. The AU-rich sequences in the 3′ untranslated region mediate the increased turnover of interferon mRNA induced by glucocorticoids. Journal of Experimental Medicine 173: 349-355.
41. Piao HL, Lim JH, Kim SJ, Cheong G-W, Hwang I. 2001. Constitutive over-expression of AtGSK1 induces NaCl stress responses in the absence of NaCl stress and results in enhanced tolerance in Arabidopsis. Plant Journal 27: 305-314.
42. Ramsay G. 1998. DNA chips: state-of-the art. Nature Biotechnology 16: 40-44.
43. Ricard B, Couée I, Raymond P, Saglio PH, Saint-Ges V, Pradet A. 1994. Plant metabolism under hypoxia and anoxia. Plant Physiology and Biochemistry 32: 1-10.
44. Richmond T, Somerville S. 2000. Chasing the dream: plant EST microarrays. Current Opinion in Plant Biology 3: 108-116.
45. Roberts JKM, Callis J, Wemmer D, Walbot V, Jardetzky O. 1984a. Mechanisms of cytoplasmic pH regulation in hypoxic maize root tips and its role in survival under anoxia. Proceedings of the National Academy of Sciences of the USA 81: 3368-3372.
46. Roberts JKM, Callis J, Jardetzky O, Walbot V, Freeling M. 1984b. Cytoplasmic acidosis as a determinant of flooding intolerance in plants. Proceedings of the National Academy of Sciences of the USA 81: 6029-6033.
47. Roberts JKM, Andrade FH, Anderson IC. 1985. Further evidence that cytoplasmic acidosis is a determinant of flooding intolerance in plants. Plant Physiology 77: 492-494.
48. Sachs MM, Freeling M, Okimoto R. 1980. The anaerobic proteins of maize. Cell 20: 761-767.
49. Sachs MM, Subbaiah CC, Saab IN. 1996. Anaerobic gene expression and flooding tolerance in maize. Journal of Experimental Botany 47: 1-15.
50. Sakamoto A, Murata N. 2000. Genetic engineering of glycinebetaine synthesis in plants: current status and implications for enhancement of stress tolerance. Journal of Experimental Botany 51: 81-88.
51. Schena M. 1996. Genome analysis with gene expression microarrays. Bioessays 18: 427-431.
52. Shen Q, Uknes SJ, Ho TH. 1993. Hormone response complex in a novel abscisic acid and cycloheximide- inducible barley gene. Journal of Biological Chemistry 268: 23652-23660.
53. Smith NA, Singh SP, Wang MB, Stoutjesdijk PA, Green AG, Waterhouse PM. 2000. Total silencing by intron-spliced hairpin RNAs. Nature 407: 319-320.
54. Stockinger EJ, Gilmour SJ, Thomashow MF. 1997. Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proceedings of the National Academy of Sciences of the USA 94: 1035-1040.
55. Tamminen I, Makela P, Heino P, Palva ET. 2001. Ectopic expression of ABI3 gene enhances freezing tolerance in response to abscisic acid and low temperature in Arabidopsis thaliana. Plant Journal 25: 1-8.
56. Thomashow MF. 2001. So what's new in the field of plant cold acclimation? Lots! Plant Physiology 125: 89-93.
57. Thompson AJ, Jackson AC, Symonds RC, Mulholland BJ, Dadswell AR, Blake PS, Burbidge A, Taylor IB. 2000. Ectopic expression of a tomato 9-cis-epoxycarotenoid dioxygenase gene causes over-production of abscisic acid. Plant Journal 23: 363-374.
58. Urao T, Noji M, Yamaguchi-Shinozaki K, Shinozaki K. 1996. A transcriptional activation domain of ATMYB2, a drought-inducible Arabidopsis Myb-related protein. Plant Journal 10: 1145-1148.
59. Urao T, Yamaguchi-Shinozaki K, Urao S, Shinozaki K. 1993. An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Plant Cell 5: 1529-1539.
60. Waterhouse PM, Graham MW, Wang MB. 1998. Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA. Proceedings of the National Academy of Sciences of the USA 95: 13959-13964.
61. Wisdom R, Lee W. 1991. The protein-coding region of c-myc mRNA contains a sequence that specifies rapid mRNA turnover and induction by protein synthesis inhibitors. Genes and Development 5: 232-243.
62. Yamaguchi-Shinozaki K, Shinozaki K. 2001. Improving plant drought, salt and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Novartis Foundation Symposium 236: 176-186.
63. Yeilding NM, Procopio WN, Rehman MT, Lee WMF. 1998. c-myc mRNA is down-regulated during myogenic differentiation by accelerated decay that depends on translation of regulatory coding elements. Journal of Biological Chemistry 273: 15749-15757.