Profiling dendritic cell maturation with dedicated microarrays

Journal of Leukocyte Biology

Volumn 78, Issue 3, 2005, Pages 794-803

  McIlroy, Dorian ^a   Tanguy Royer, Séverine ^a   Le Meur, Nolwenn ^b   Guisle, Isabelle ^b   Royer, Pierre Joseph ^a   Léger, Jean ^b   Meflah, Khaled ^a   Grégoire, Marc ^a,c  

^a INSERM   (France)

^b Parc Scientifique de Luminy   (France)

^c INSTITUT DE BIOLOGIE   (France)

Author keywords

Human; Phagocyte; Toll like receptor

Indexed keywords

3 HYDROXYANTHRANILATE 3,4 DIOXYGENASE; CD83 ANTIGEN; CD86 ANTIGEN; INDOLEAMINE 2,3 DIOXYGENASE; INTERLEUKIN 12; KYNURENINASE; KYNURENINE 3 MONOOXYGENASE; POLYINOSINIC POLYCYTIDYLIC ACID; RNA; TRYPTOPHAN; TRYPTOPHAN TRANSFER RNA LIGASE; TUMOR NECROSIS FACTOR ALPHA;

ANTIGEN PRESENTING CELL; ARTICLE; CELL KINETICS; CELL MATURATION; CONTROLLED STUDY; DENDRITIC CELL; DNA MICROARRAY; ENZYME LINKED IMMUNOSORBENT ASSAY; FLOW CYTOMETRY; HUMAN; HUMAN CELL; IMMUNE RESPONSE; INTERMETHOD COMPARISON; PERIPHERAL BLOOD MONONUCLEAR CELL; PHAGOCYTE; PHENOTYPE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; T LYMPHOCYTE; TRYPTOPHAN METABOLISM;

EID: 24744449952     PISSN: 07415400     EISSN: None     Source Type: Journal    
DOI: 10.1189/jlb.0105029     Document Type: Article

References (42)

1. Banchereau, J., Steinman, R. M. (1998) Dendritic cells and the control of immunity. Nature 392, 245-252.
2. Banchereau, J., Briere, F., Caux, C., Davoust, J., Lebecque, S., Liu, Y. J., Pulendran, B., Palucka, K. (2000) Immunobiology of dendritic cells. Annu. Rev. Immunol. 18, 767-811.
3. Janeway Jr., C. A., Medzhitov, R. (2002) Innate immune recognition. Annu. Rev. Immunol. 20, 197-216.
4. Salomon, B., Bluestone, J. A. (2001) Complexities of CD28/B7: CTLA-4 costimulatory pathways in autoimmunity and transplantation. Annu. Rev. Immunol. 19, 225-252.
5. Bleharski, J. R., Niazi, K. R., Sieling, P. A., Cheng, G., Modlin, R. L. (2001) Signaling lymphocytic activation molecule is expressed on CD40 ligand-activated dendritic cells and directly augments production of inflammatory cytokines. J. Immunol. 167, 3174-3181.
6. Moser, M., Murphy, K. M. (2000) Dendritic cell regulation of TH1-TH2 development. Nat. Immunol. 1, 199-205.
7. Nakanishi, K., Yoshimoto, T., Tsutsui, H., Okamura, H. (2001) Interleukin-18 regulates both Th1 and Th2 responses. Annu. Rev. Immunol. 19, 423-474.
8. Corinti, S., Albanesi, C., la Sala, A., Pastore, S., Girolomoni, G. (2001) Regulatory activity of autocrine IL-10 on dendritic cell functions. J. Immunol. 166, 4312-4318.
9. Dzionek, A., Fuchs, A., Schmidt, P., Cremer, S., Zysk, M., Miltenyi, S., Buck, D. W., Schmitz, J. (2000) BDCA-2, BDCA-3, and BDCA-4: three markers for distinct subsets of dendritic cells in human peripheral blood. J. Immunol. 165, 6037-6046.
10. MacDonald, K. P., Munster, D. J., Clark, G. J., Dzionek, A., Schmitz, J., Hart, D. N. (2002) Characterization of human blood dendritic cell subsets. Blood 100, 4512-4520.
11. Rissoan, M. C., Soumelis, V., Kadowaki, N., Grouard, G., Briere, F., de Waal Malefyt, R., Liu, Y. J. (1999) Reciprocal control of T helper cell and dendritic cell differentiation. Science 283, 1183-1186.
12. Ito, T., Amakawa, R., Kaisho, T., Hemmi, H., Tajima, K., Uehira, K., Ozaki, Y., Tomizawa, H., Akira, S., Fukuhara, S. (2002) Interferon-α and interleukin-12 are induced differentially by Toll-like receptor 7 ligands in human blood dendritic cell subsets. J. Exp. Med. 195, 1507-1512.
13. Langenkamp, A., Nagata, K., Murphy, K., Wu, L., Lanzavecchia, A., Sallusto, F. (2003) Kinetics and expression patterns of chemokine receptors in human CD4+ T lymphocytes primed by myeloid or plasmacytoid dendritic cells. Eur. J. Immunol. 33, 474-482.
14. Langenkamp, A., Messi, M., Lanzavecchia, A., Sallusto, F. (2000) Kinetics of dendritic cell activation: impact on priming of TH1, TH2 and nonpolarized T cells. Nat. Immunol. 1, 311-316.
15. de Jong, E. C., Vieira, P. L., Kalinski, P., Schuitemaker, J. H., Tanaka, Y., Wierenga, E. A., Yazdanbakhsh, M., Kapsenberg, M. L. (2002) Microbial compounds selectively induce Th1 cell-promoting or Th2 cell-promoting dendritic cells in vitro with diverse th cell-polarizing signals. J. Immunol. 168, 1704-1709.
16. Caron, G., Delneste, Y., Roelandts, E., Duez, C., Bonnefoy, J. Y., Pestel, J., Jeannin, P. (2001) Histamine polarizes human dendritic cells into Th2 cell-promoting effector dendritic cells. J. Immunol. 167, 3682-3686.
17. Dietz, A. B., Bulur, P. A., Knutson, G. J., Matasic, R., Vuk-Pavlovic, S. (2000) Maturation of human monocyte-derived dendritic cells studied by microarray hybridization. Biochem. Biophys. Res. Commun. 275, 731-738.
18. Le Naour, F., Hohenkirk, L., Grolleau, A., Misek, D. E., Lescure, P., Geiger, J. D., Hanash, S., Beretta, L. (2001) Profiling changes in gene expression during differentiation and maturation of monocyte-derived dendritic cells using both oligonucleotide microarrays and proteomics. J. Biol. Chem. 276, 17920-17931.
19. Granucci, F., Vizzardelli, C., Virzi, E., Rescigno, M., Ricciardi-Castagnoli, P. (2001) Transcriptional reprogramming of dendritic cells by differentiation stimuli. Eur. J. Immunol. 31, 2539-2546.
20. Huang, Q., Liu, D., Majewski, P., Schulte, L. C., Korn, J. M., Young, R. A., Lander, E. S., Hacohen, N. (2001) The plasticity of dendritic cell responses to pathogens and their components. Science 294, 870-875.
21. Ahn, J. H., Lee, Y., Jeon, C., Lee, S. J., Lee, B. H., Choi, K. D., Bae, Y. S. (2002) Identification of the genes differentially expressed in human dendritic cell subsets by cDNA subtraction and microarray analysis. Blood 100, 1742-1754.
22. Ju, X. S., Hacker, C., Madruga, J., Kurz, S. M., Knespel, S., Blendinger, G., Rose-John, S., Martin, Z. (2003) Towards determining the differentiation program of antigen-presenting dendritic cells by transcriptional profiling. Eur. J. Cell Biol. 82, 75-86.
23. Tureci, O., Bian, H., Nestle, F. O., Raddrizzani, L., Rosinski, J. A., Tassis, A., Hilton, H., Walstead, M., Sahin, U., Hammer, J. (2003) Cascades of transcriptional induction during dendritic cell maturation revealed by genome-wide expression analysis. FASEB J. 17, 836-847.
24. Chaussabel, D., Semnani, R. T., McDowell, M. A., Sacks, D., Sher, A., Nutman, T. B. (2003) Unique gene expression profiles of human macrophages and dendritic cells to phytogenetically distinct parasites. Blood 102, 672-681.
25. Le Meur, N., Lamirault, G., Bihouee, A., Steenman, M., Bedrine-Ferran, H., Teusan, R., Ramstein, G., Leger, J. J. (2004) A dynamic, web-accessible resource to process raw microarray scan data into consolidated gene expression values: importance of replication. Nucleic Acids Res. 32, 5349-5358.
26. Yang, Y. H., Dudoit, S., Luu, P., Lin, D. M., Peng, V., Ngai, J., Speed, T. P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30, e15.
27. Tseng, G. C., Oh, M. K., Rohlin, L., Liao, J. C., Wong, W. H. (2001) Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res. 29, 2549-2557.
28. Spisek, R., Bretaudeau, L., Barbieux, I., Meflah, K., Gregoire, M. (2001) Standardized generation of fully mature p70 IL-12 secreting monocyte-derived dendritic cells for clinical use. Cancer Immunol. Immunother. 50, 417-427.
29. Grohmann, U., Fallarino, F., Puccetti, P. (2003) Tolerance, DCs and tryptophan: much ado about IDO. Trends Immunol. 24, 242-248.
30. Munn, D. H., Sharma, M. D., Lee, J. R., Jhaver, K. G., Johnson, T. S., Keskin, D. B., Marshall, B., Chandler, P., Antonia, S. J., Burgess, R., Slingluff Jr., C. L., Mellor, A. L. (2002) Potential regulatory function of human dendritic cells expressing indoleamine 2,3-dioxygenase. Science 297, 1867-1870.
31. Munn, D. H., Zhou, M., Attwood, J. T., Bondarev, I., Conway, S. J., Marshall, B., Brown, C., Mellor, A. L. (1998) Prevention of allogeneic fetal rejection by tryptophan catabolism. Science 281, 1191-1193.
32. Tusher, V. G., Tibshirani, R., Chu, G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 98, 5116-5121.
33. Vulcano, M., Struyf, S., Scapini, P., Cassatella, M., Bernasconi, S., Boneechi, R., Calleri, A., Penna, G., Adorini, L., Luini, W., Mantovani, A., Van Damme, J., Sozzani, S. (2003) Unique regulation of CCL18 production by maturing dendritic cells. J. Immunol. 170, 3843-3849.
34. Geissmann, F., Jung, S., Littman, D. R. (2003) Blood monocytes consist of two principal subsets with distinct migratory properties. Immunity 19, 71-82.
35. Ancuta, P., Rao, R., Moses, A., Mehle, A., Shaw, S. K., Luscinskas, F. W., Gabuzda, D. (2003) Fractalkine preferentially mediates arrest and migration of CD16+ monocytes. J. Exp. Med. 197, 1701-1707.
36. Colonna, M., Samaridis, J., Angman, L. (2000) Molecular characterization of two novel C-type lectin-like receptors, one of which is selectively expressed in human dendritic cells. Eur. J. Immunol. 30, 697-704.
37. Munn, D. H., Shafizadeh, E., Attwood, J. T., Bondarev, I., Pashine, A., Mellor, A. L. (1999) Inhibition of T cell proliferation by macrophage tryptophan catabolism. J. Exp. Med. 189, 1363-1372.
38. Frumento, G., Rotondo, R., Tonetti, M., Damonte, G., Benatti, U., Ferrara, G. B. (2002) Tryptophan-derived catabolites are responsible for inhibition of T and natural killer cell proliferation induced by indoleamine 2,3-dioxygenase. J. Exp. Med. 196, 459-468.
39. Terness, P., Bauer, T. M., Rose, L., Dufter, C., Watzlik, A., Simon, H., Opelz, G. (2002) Inhibition of allogeneic T cell proliferation by indoleamine 2,3-dioxygenase-expressing dendritic cells: mediation of suppression by tryptophan metabolites. J. Exp. Med. 196, 447-457.
40. Daubener, W., MacKenzie, C. R. (1999) IFN-γ-activated indoleamine 2,3-dioxygenase activity in human cells is an antiparasitic and an anti-bacterial effector mechanism. Adv. Exp. Med. Biol. 467, 517-524.
41. Adams, O., Besken, K., Oberdorfer, C., MacKenzie, C. R., Takikawa, O., Daubener, W. (2004) Role of indoleamine-2,3-dioxygenase in α/β and γ interferon-mediated antiviral effects against herpes simplex virus infections. J. Virol. 78, 2632-2636.
42. Robinson, C. M., Hale, P. T., Carlin, J. M. (2005) The role of IFN-γ and TNF-α-responsive regulatory elements in the synergistic induction of indoleamine dioxygenase. J. Interferon Cytokine Res. 25, 20-30.