-
1
-
-
0037436511
-
Structural genomics: Current progress
-
Gerstein, M., A. Edwards, C. H. Arrowsmith, and G. T. Montelione. 2003. Structural genomics: current progress. Science. 299:1663.
-
(2003)
Science
, vol.299
, pp. 1663
-
-
Gerstein, M.1
Edwards, A.2
Arrowsmith, C.H.3
Montelione, G.T.4
-
2
-
-
0037435031
-
From words to literature in structural proteomics
-
Sali, A., R. Glaeser, T. Earnest, and W. Baumeister. 2003. From words to literature in structural proteomics. Nature. 422:216-225.
-
(2003)
Nature
, vol.422
, pp. 216-225
-
-
Sali, A.1
Glaeser, R.2
Earnest, T.3
Baumeister, W.4
-
3
-
-
12144290243
-
Structure-based assembly of protein complexes in yeast
-
Aloy, P., B. Bottcher, H. Ceulemans, C. Leutwein, C. Mellwig, S. Fischer, A. C. Gavin, P. Bork, G. Superti-Furga, L. Serrano, and R. B. Russell. 2004. Structure-based assembly of protein complexes in yeast. Science. 303:2026-2029.
-
(2004)
Science
, vol.303
, pp. 2026-2029
-
-
Aloy, P.1
Bottcher, B.2
Ceulemans, H.3
Leutwein, C.4
Mellwig, C.5
Fischer, S.6
Gavin, A.C.7
Bork, P.8
Superti-Furga, G.9
Serrano, L.10
Russell, R.B.11
-
5
-
-
0242571958
-
Small angle scattering studies of biological macromolecules in solution
-
Svergun, D. I., and M. H. J. Koch. 2003. Small angle scattering studies of biological macromolecules in solution. Rep. Prog. Phys. 66:1735-1782.
-
(2003)
Rep. Prog. Phys.
, vol.66
, pp. 1735-1782
-
-
Svergun, D.I.1
Koch, M.H.J.2
-
6
-
-
0001252801
-
New developments in direct shape determination from small-angle scattering. II. Uniqueness
-
Svergun, D. I., V. V. Volkov, M. B. Kozin, and H. B. Stuhrmann. 1996. New developments in direct shape determination from small-angle scattering. II. Uniqueness. Acta Crystallogr, A52:419-426,
-
(1996)
Acta Crystallogr.
, vol.A52
, pp. 419-426
-
-
Svergun, D.I.1
Volkov, V.V.2
Kozin, M.B.3
Stuhrmann, H.B.4
-
7
-
-
0031807272
-
Low-resolution structures of proteins in solution retrieved from x-ray scattering with a genetic algorithm
-
Chacon, P., F. Moran, J. F. Diaz, E. Pantos, and J. M. Andreu. 1998. Low-resolution structures of proteins in solution retrieved from x-ray scattering with a genetic algorithm. Biophys. J. 74:2760-2775.
-
(1998)
Biophys. J.
, vol.74
, pp. 2760-2775
-
-
Chacon, P.1
Moran, F.2
Diaz, J.F.3
Pantos, E.4
Andreu, J.M.5
-
8
-
-
0034484041
-
Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle x-ray solution scattering data for biomolecules
-
Walther, D., F. E. Cohen, and S. Doniach. 2000. Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle x-ray solution scattering data for biomolecules. J. Appl. Crystallogr. 33:350-363.
-
(2000)
J. Appl. Crystallogr.
, vol.33
, pp. 350-363
-
-
Walther, D.1
Cohen, F.E.2
Doniach, S.3
-
9
-
-
0037207111
-
The solution structure of a cardiac troponin C-troponin I-troponin T complex shows a somewhat compact troponin C interacting with an extended troponin I-troponin T component
-
Heller, W. T., E. Abusamhadneh, N. Finley, P. R. Rosevear, and J. Trewhella. 2002. The solution structure of a cardiac troponin C-troponin I-troponin T complex shows a somewhat compact troponin C interacting with an extended troponin I-troponin T component. Biochemistry. 41:15654-15663.
-
(2002)
Biochemistry
, vol.41
, pp. 15654-15663
-
-
Heller, W.T.1
Abusamhadneh, E.2
Finley, N.3
Rosevear, P.R.4
Trewhella, J.5
-
10
-
-
0033001996
-
Restoring low-resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun, D. I. 1999. Restoring low-resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys. J. 76:2879-2886.
-
(1999)
Biophys. J.
, vol.76
, pp. 2879-2886
-
-
Svergun, D.I.1
-
11
-
-
0035010533
-
Determination of domain structure of proteins from x-ray solution scattering
-
Svergun, D. I., M. V. Petoukhov, and M. H. J. Koch. 2001. Determination of domain structure of proteins from x-ray solution scattering. Biophys. J. 80:2946-2953.
-
(2001)
Biophys. J.
, vol.80
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.J.3
-
12
-
-
0033660312
-
Large-scale shape changes in proteins and macromolecular complexes
-
Wall, M. E., S. C. Gallagher, and J. Trewhella. 2000. Large-scale shape changes in proteins and macromolecular complexes. Annu. Rev. Phys. Chem. 51:355-380.
-
(2000)
Annu. Rev. Phys. Chem.
, vol.51
, pp. 355-380
-
-
Wall, M.E.1
Gallagher, S.C.2
Trewhella, J.3
-
13
-
-
0033548612
-
The Fab and Fc fragments of IgA1 exhibit a different arrangement from that in IgG: A study by x-ray and neutron solution scattering and homology modeling
-
Boehm, M. K., J. M. Woof, M. A. Kerr, and S. J. Perkins. 1999. The Fab and Fc fragments of IgA1 exhibit a different arrangement from that in IgG: a study by x-ray and neutron solution scattering and homology modeling. J. Mol. Biol. 286:1421-1447.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1421-1447
-
-
Boehm, M.K.1
Woof, J.M.2
Kerr, M.A.3
Perkins, S.J.4
-
14
-
-
6344245769
-
The dimeric and trimeric solution structures of the multidomain complement protein properdin by x-ray scattering, analytical ultracentrifugation and constrained modeling
-
Sun, Z., K. B. Reid, and S. J. Perkins. 2004. The dimeric and trimeric solution structures of the multidomain complement protein properdin by x-ray scattering, analytical ultracentrifugation and constrained modeling. J. Mol. Biol. 343:1327-1343.
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 1327-1343
-
-
Sun, Z.1
Reid, K.B.2
Perkins, S.J.3
-
15
-
-
0029185933
-
CRYSOL - A program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun, D. I., C. Barberato, and M. H. J. Koch. 1995. CRYSOL-a program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates. J. Appl. Crystallogr. 28:768-773.
-
(1995)
J. Appl. Crystallogr.
, vol.28
, pp. 768-773
-
-
Svergun, D.I.1
Barberato, C.2
Koch, M.H.J.3
-
16
-
-
0032478214
-
Protein hydration in solution: Experimental observation by x-ray and neutron scattering
-
Svergun, D. I., S. Richard, M. H. J. Koch, Z. Sayers, S. Kuprin, and G. Zaccai. 1998. Protein hydration in solution: experimental observation by x-ray and neutron scattering. Proc. Natl. Acad. Sci. USA. 95:2267-2272.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 2267-2272
-
-
Svergun, D.I.1
Richard, S.2
Koch, M.H.J.3
Sayers, Z.4
Kuprin, S.5
Zaccai, G.6
-
17
-
-
0001540719
-
Solution scattering from biopolymers: Advanced contrast variation data analysis
-
Svergun, D. I. 1994. Solution scattering from biopolymers: advanced contrast variation data analysis. Acta Crystallogr. A50:391-402.
-
(1994)
Acta Crystallogr.
, vol.A50
, pp. 391-402
-
-
Svergun, D.I.1
-
18
-
-
0034503624
-
A software system for automated and interactive rigid body modeling of solution scattering data
-
Kozin, M. B., and D. I. Svergun. 2000. A software system for automated and interactive rigid body modeling of solution scattering data. J. Appl. Crystallogr. 33:775-777.
-
(2000)
J. Appl. Crystallogr.
, vol.33
, pp. 775-777
-
-
Kozin, M.B.1
Svergun, D.I.2
-
19
-
-
0034849689
-
MASSHA - A graphic system for rigid body modeling of macromolecular complexes against solution scattering data
-
Konarev, P. V., M. V. Petoukhov, and D. I. Svergun. 2001. MASSHA-a graphic system for rigid body modeling of macromolecular complexes against solution scattering data. J. Appl. Crystallogr. 34:527-532.
-
(2001)
J. Appl. Crystallogr.
, vol.34
, pp. 527-532
-
-
Konarev, P.V.1
Petoukhov, M.V.2
Svergun, D.I.3
-
20
-
-
0034636190
-
Calmodulin remains extended upon binding to smooth muscle caldesmon: A combined small-angle scattering and Fourier transform infrared spectroscopy study
-
Krueger, J. K., S. C. Gallagher, C. A. Wang, and J. Trewhella. 2000. Calmodulin remains extended upon binding to smooth muscle caldesmon: a combined small-angle scattering and Fourier transform infrared spectroscopy study. Biochemistry. 39:3979-3987.
-
(2000)
Biochemistry
, vol.39
, pp. 3979-3987
-
-
Krueger, J.K.1
Gallagher, S.C.2
Wang, C.A.3
Trewhella, J.4
-
21
-
-
0037023757
-
A structural model of the catalytic subunit-regulatory subunit dimeric complex of the cAMP-dependent protein kinase
-
Tung, C. S., D. A. Walsh, and J. Trewhella. 2002. A structural model of the catalytic subunit-regulatory subunit dimeric complex of the cAMP-dependent protein kinase. J. Biol. Chem. 277:12423-12431.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 12423-12431
-
-
Tung, C.S.1
Walsh, D.A.2
Trewhella, J.3
-
22
-
-
0035997077
-
Quaternary structure built from subunits combining NMR and small-angle x-ray scattering data
-
Martinen, M. L., K. Paakkonen, T. Ikonen, J. Craven, T. Drakenberg, R. Serimaa, J. Waltho, and A. Annila. 2002. Quaternary structure built from subunits combining NMR and small-angle x-ray scattering data. Biophys. J. 83:1177-1183.
-
(2002)
Biophys. J.
, vol.83
, pp. 1177-1183
-
-
Martinen, M.L.1
Paakkonen, K.2
Ikonen, T.3
Craven, J.4
Drakenberg, T.5
Serimaa, R.6
Waltho, J.7
Annila, A.8
-
23
-
-
0000950063
-
Restoring three-dimensional structure of biopolymers from solution scattering
-
Svergun, D. I. 1997. Restoring three-dimensional structure of biopolymers from solution scattering. J. Appl. Crystallogr. 30:792-797.
-
(1997)
J. Appl. Crystallogr.
, vol.30
, pp. 792-797
-
-
Svergun, D.I.1
-
24
-
-
0026243243
-
Mathematical methods in small-angle scattering data analysis
-
Svergun, D. I. 1991. Mathematical methods in small-angle scattering data analysis. J. Appl. Crystallogr. 24:485-492.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 485-492
-
-
Svergun, D.I.1
-
25
-
-
0000107717
-
Shape determination from solution scattering of biopolymers
-
Svergun, D. I., V. V. Volkov, M. B. Kozin, H. B. Stuhrmann, C. Barberato, and M. H. J. Koch. 1997. Shape determination from solution scattering of biopolymers. J. Appl. Crystallogr. 30:798-802.
-
(1997)
J. Appl. Crystallogr.
, vol.30
, pp. 798-802
-
-
Svergun, D.I.1
Volkov, V.V.2
Kozin, M.B.3
Stuhrmann, H.B.4
Barberato, C.5
Koch, M.H.J.6
-
27
-
-
0036930752
-
Addition of missing loops and domains to protein models by x-ray solution scattering
-
Petoukhov, M. V., N. A. Eady, K. A. Brown, and D. I. Svergun. 2002. Addition of missing loops and domains to protein models by x-ray solution scattering. Biophys. J. 83:3113-3125.
-
(2002)
Biophys. J.
, vol.83
, pp. 3113-3125
-
-
Petoukhov, M.V.1
Eady, N.A.2
Brown, K.A.3
Svergun, D.I.4
-
28
-
-
0003474751
-
-
University Press, Cambridge
-
Press, W. H., S. A. Teukolsky, W. T. Wetterling, and B. P. Flannery. 1992. Numerical Recipes. University Press, Cambridge.
-
(1992)
Numerical Recipes
-
-
Press, W.H.1
Teukolsky, S.A.2
Wetterling, W.T.3
Flannery, B.P.4
-
29
-
-
43949164756
-
Simulated annealing: Practice versus theory
-
Ingber, L. 1993. Simulated annealing: practice versus theory. Math. Comput. Model. 18:29-57.
-
(1993)
Math. Comput. Model.
, vol.18
, pp. 29-57
-
-
Ingber, L.1
-
30
-
-
0022787110
-
Data appraisal, evaluation and display for synchrotron radiation experiments: Hardware and software
-
Boulin, C., R. Kempf, M. H. J. Koch, and S. M. McLaughlin. 1986. Data appraisal, evaluation and display for synchrotron radiation experiments: hardware and software. Nucl. Instrum. Methods A. 249:399-407.
-
(1986)
Nucl. Instrum. Methods A
, vol.249
, pp. 399-407
-
-
Boulin, C.1
Kempf, R.2
Koch, M.H.J.3
McLaughlin, S.M.4
-
31
-
-
0024033744
-
Data acquisition systems for linear and area x-ray detectors using delay line readout
-
Boulin, C. J., R. Kempf, A. Gabriel, and M. H. J. Koch. 1988. Data acquisition systems for linear and area x-ray detectors using delay line readout. Nucl. Instrum. Methods A. 269:312-320.
-
(1988)
Nucl. Instrum. Methods A
, vol.269
, pp. 312-320
-
-
Boulin, C.J.1
Kempf, R.2
Gabriel, A.3
Koch, M.H.J.4
-
32
-
-
0020114103
-
X-ray diffraction and scattering on disordered systems using synchrotron radiation
-
Koch, M. H. J., and J. Bordas. 1983. X-ray diffraction and scattering on disordered systems using synchrotron radiation. Nucl. Instrum. Methods. 208:461-469.
-
(1983)
Nucl. Instrum. Methods
, vol.208
, pp. 461-469
-
-
Koch, M.H.J.1
Bordas, J.2
-
33
-
-
0004320544
-
The small angle x-ray scattering instrument D24
-
LURE, Orsay, France
-
Depautex, C., P. Desvignes, P. Leboucher, M. Lemonnier, D. Dagenaux, J. P. Benoit, and P. Vachette. 1987. The small angle x-ray scattering instrument D24. CNRS Annual Report, LURE, Orsay, France.
-
(1987)
CNRS Annual Report
-
-
Depautex, C.1
Desvignes, P.2
Leboucher, P.3
Lemonnier, M.4
Dagenaux, D.5
Benoit, J.P.6
Vachette, P.7
-
34
-
-
0031751233
-
A model of the quaternary structure of the Escherichia coli F1 ATPase from x-ray solution scattering and evidence for structural changes in the δ-subunit during ATP hydrolysis
-
Svergun, D. I., I. Aldag, T. Sieck, K. Altendorf, M. H. J. Koch, D. J. Kane, M. B. Kozin, and G. Grueber. 1998. A model of the quaternary structure of the Escherichia coli F1 ATPase from x-ray solution scattering and evidence for structural changes in the δ-subunit during ATP hydrolysis. Biophys. J. 75:2212-2219.
-
(1998)
Biophys. J.
, vol.75
, pp. 2212-2219
-
-
Svergun, D.I.1
Aldag, I.2
Sieck, T.3
Altendorf, K.4
Koch, M.H.J.5
Kane, D.J.6
Kozin, M.B.7
Grueber, G.8
-
35
-
-
0034614372
-
Crystal versus solution structures of thiamine diphosphate-dependent enzymes
-
Svergun, D. I., M. V. Petoukhov, M. H. J. Koch, and S. Koenig. 2000. Crystal versus solution structures of thiamine diphosphate-dependent enzymes. J. Biol. Chem. 275:297-302.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 297-302
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.J.3
Koenig, S.4
-
36
-
-
0033955391
-
Low-resolution structure of the proteolytic fragments of the Rapana venosa hemocyanin in solution
-
Dainese, E., D. Svergun, M. Beltramini, P. Di Muro, and B. Salvato. 2000. Low-resolution structure of the proteolytic fragments of the Rapana venosa hemocyanin in solution. Arch. Biochem. Biophys. 373:154-162.
-
(2000)
Arch. Biochem. Biophys.
, vol.373
, pp. 154-162
-
-
Dainese, E.1
Svergun, D.2
Beltramini, M.3
Di Muro, P.4
Salvato, B.5
-
37
-
-
0141737107
-
Conformation of full-length Bruton tyrosine kinase (Btk) from synchrotron x-ray solution scattering
-
Marquez, J. A., C. I. Smith, M. V. Petoukhov, P. Lo Surdo, P. T. Mattsson, M. Knekt, A. Westlund, K. Scheffzek, M. Saraste, and D. I. Svergun. 2003. Conformation of full-length Bruton tyrosine kinase (Btk) from synchrotron x-ray solution scattering. EMBO J. 22:4616-4624.
-
(2003)
EMBO J.
, vol.22
, pp. 4616-4624
-
-
Marquez, J.A.1
Smith, C.I.2
Petoukhov, M.V.3
Lo Surdo, P.4
Mattsson, P.T.5
Knekt, M.6
Westlund, A.7
Scheffzek, K.8
Saraste, M.9
Svergun, D.I.10
-
38
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M., J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne. 2000. The Protein Data Bank. Nucleic Acids Res. 28:235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
39
-
-
0035119935
-
Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase
-
Sekine, S., O. Nureki, A. Shimada, D. G. Vassylyev, and S. Yokoyama. 2001. Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase. Nat. Struct. Biol. 8:203-206.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 203-206
-
-
Sekine, S.1
Nureki, O.2
Shimada, A.3
Vassylyev, D.G.4
Yokoyama, S.5
-
40
-
-
0030863908
-
ATP synthase: A tentative structural model
-
Engelbrecht, S., and W. Junge. 1997. ATP synthase: a tentative structural model. FEBS Lett. 414:485-491.
-
(1997)
FEBS Lett.
, vol.414
, pp. 485-491
-
-
Engelbrecht, S.1
Junge, W.2
-
43
-
-
0032493736
-
High resolution crystal structure of pyruvate decarboxylase from Zymomonas mobilis. Implications for substrate activation in pyruvate decarboxylases
-
Dobritzsch, D., S. Konig, G. Schneider, and G. Lu. 1998. High resolution crystal structure of pyruvate decarboxylase from Zymomonas mobilis. Implications for substrate activation in pyruvate decarboxylases. J. Biol. Chem. 273:20196-20204.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 20196-20204
-
-
Dobritzsch, D.1
Konig, S.2
Schneider, G.3
Lu, G.4
-
44
-
-
0032525161
-
Crystal structure of a functional unit from Octopus hemocyanin
-
Cuff, M. E., K. I. Miller, K. E. van Holde, and W. A. Hendrickson. 1998. Crystal structure of a functional unit from Octopus hemocyanin. J. Mol. Biol. 278:855-870.
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 855-870
-
-
Cuff, M.E.1
Miller, K.I.2
Van Holde, K.E.3
Hendrickson, W.A.4
-
45
-
-
0028931691
-
Crystal structures of a schistosomal drug and vaccine target: Glutathione S-transferase from Schistosoma japonica and its complex with the leading antischistosomal drug praziquantel
-
McTigue, M. A., D. R. Williams, and J. A. Tainer. 1995. Crystal structures of a schistosomal drug and vaccine target: glutathione S-transferase from Schistosoma japonica and its complex with the leading antischistosomal drug praziquantel. J. Mol. Biol. 246:21-27.
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 21-27
-
-
McTigue, M.A.1
Williams, D.R.2
Tainer, J.A.3
-
46
-
-
0031015737
-
Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: Crystallographic evidence
-
Sawaya, M. R., and J. Kraut. 1997. Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence. Biochemistry. 36:586-603.
-
(1997)
Biochemistry
, vol.36
, pp. 586-603
-
-
Sawaya, M.R.1
Kraut, J.2
-
47
-
-
0031565729
-
Analysis of protein-protein interaction sites using surface patches
-
Jones, S., and J. M. Thornton. 1997. Analysis of protein-protein interaction sites using surface patches. J. Mol. Biol. 272:121-132.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 121-132
-
-
Jones, S.1
Thornton, J.M.2
-
48
-
-
0036022960
-
Further development and validation of empirical scoring functions for structure-based binding affinity prediction
-
Wang, R., L. Lai, and S. Wang. 2002. Further development and validation of empirical scoring functions for structure-based binding affinity prediction. J. Comput. Aided Mol. Des. 16:11-26.
-
(2002)
J. Comput. Aided Mol. Des.
, vol.16
, pp. 11-26
-
-
Wang, R.1
Lai, L.2
Wang, S.3
-
49
-
-
0037093645
-
Dissecting protein-protein recognition sites
-
Chakrabarti, P., and J. Janin. 2002. Dissecting protein-protein recognition sites. Proteins. 47:334-343.
-
(2002)
Proteins
, vol.47
, pp. 334-343
-
-
Chakrabarti, P.1
Janin, J.2
-
50
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Lo Conte, L., C. Chothia, and J. Janin. 1999. The atomic structure of protein-protein recognition sites. J. Mol. Biol. 285:2177-2198.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
51
-
-
0037846433
-
A protein-protein docking algorithm dependent on the type of complexes
-
Li, C. H., X. H. Ma, W. Z. Chen, and C. X. Wang. 2003. A protein-protein docking algorithm dependent on the type of complexes. Protein Eng. 16:265-269.
-
(2003)
Protein Eng.
, vol.16
, pp. 265-269
-
-
Li, C.H.1
Ma, X.H.2
Chen, W.Z.3
Wang, C.X.4
-
52
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
Gray, J. J., S. Moughon, C. Wang, O. Schueler-Furman, B. Kuhlman, C. A. Rohl, and D. Baker. 2003. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J. Mol. Biol. 331:281-299.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
Rohl, C.A.6
Baker, D.7
-
53
-
-
0038185277
-
A novel shape complementarity scoring function for protein-protein docking
-
Chen, R., and Z. Weng. 2003. A novel shape complementarity scoring function for protein-protein docking. Proteins. 51:397-408.
-
(2003)
Proteins
, vol.51
, pp. 397-408
-
-
Chen, R.1
Weng, Z.2
-
54
-
-
0037093643
-
Docking unbound proteins using shape complementarity, desolvation, and electrostatics
-
Chen, R., and Z. Weng. 2002. Docking unbound proteins using shape complementarity, desolvation, and electrostatics. Proteins. 47:281-294.
-
(2002)
Proteins
, vol.47
, pp. 281-294
-
-
Chen, R.1
Weng, Z.2
-
55
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez, C., R. Boelens, and A. M. Bonvin. 2003. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc. 125:1731-1737.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
56
-
-
0041319073
-
Filtering and selection of structural models: Combining docking and NMR
-
Dobrodumov, A., and A. M. Gronenbom. 2003. Filtering and selection of structural models: combining docking and NMR. Proteins. 53:18-32.
-
(2003)
Proteins
, vol.53
, pp. 18-32
-
-
Dobrodumov, A.1
Gronenbom, A.M.2
-
57
-
-
0033562633
-
Use of pair potentials across protein interfaces in screening predicted docked complexes
-
Moont, G., H. A. Gabb, and M. J. Sternberg. 1999. Use of pair potentials across protein interfaces in screening predicted docked complexes. Proteins. 35:364-373.
-
(1999)
Proteins
, vol.35
, pp. 364-373
-
-
Moont, G.1
Gabb, H.A.2
Sternberg, M.J.3
-
58
-
-
0029967678
-
Crystal structure of the thiamin diphosphate-dependent enzyme pyruvate decarboxylase from the yeast Saccharomyces cerevisiae at 2.3 Å resolution
-
Arjunan, P., T. Umland, F. Dyda, S. Swaminathan, W. Furey, M. Sax, B. Farrenkopf, Y. Gao, D. Zhang, and F. Jordan. 1996. Crystal structure of the thiamin diphosphate-dependent enzyme pyruvate decarboxylase from the yeast Saccharomyces cerevisiae at 2.3 Å resolution. J. Mol. Biol. 256:590-600.
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 590-600
-
-
Arjunan, P.1
Umland, T.2
Dyda, F.3
Swaminathan, S.4
Furey, W.5
Sax, M.6
Farrenkopf, B.7
Gao, Y.8
Zhang, D.9
Jordan, F.10
-
59
-
-
0026597973
-
Crystal and molecular structure of the bovine α-chymotrypsin-eglin C complex at 2.0 Å resolution
-
Frigerio, F., A. Coda, L. Pugliese, C. Lionetti, E. Menegatti, G. Amiconi, H. P. Schnebli, P. Ascenzi, and M. Bolognesi. 1992. Crystal and molecular structure of the bovine α-chymotrypsin-eglin C complex at 2.0 Å resolution. J. Mol. Biol. 225:107-123.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 107-123
-
-
Frigerio, F.1
Coda, A.2
Pugliese, L.3
Lionetti, C.4
Menegatti, E.5
Amiconi, G.6
Schnebli, H.P.7
Ascenzi, P.8
Bolognesi, M.9
-
60
-
-
0041529609
-
Quaternary structure of Azospirillum brasilense NADPH-dependent glutamate synthase in solution as revealed by synchrotron radiation x-ray scattering
-
Petoukhov, M. V., D. I. Svergun, P. V. Konarev, S. Ravasio, R. H. van den Heuvel, B. Curti, and M. A. Vanoni. 2003. Quaternary structure of Azospirillum brasilense NADPH-dependent glutamate synthase in solution as revealed by synchrotron radiation x-ray scattering. J. Biol. Chem. 278:29933-29939.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 29933-29939
-
-
Petoukhov, M.V.1
Svergun, D.I.2
Konarev, P.V.3
Ravasio, S.4
Van Den Heuvel, R.H.5
Curti, B.6
Vanoni, M.A.7
-
61
-
-
2942689211
-
Structural characterization of the nonameric assembly of an archaeal α-L-fucosidase by synchrotron small angle x-ray scattering
-
Rosano, C., S. Zuccotti, B. Cobucci-Ponzano, M. Mazzone, M. Rossi, M. Moracci, M. V. Petoukhov, D. I. Svergun, and M. Bolognesi. 2004. Structural characterization of the nonameric assembly of an archaeal α-L-fucosidase by synchrotron small angle x-ray scattering. Biochem. Biophys. Res. Commun. 320:176-182.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.320
, pp. 176-182
-
-
Rosano, C.1
Zuccotti, S.2
Cobucci-Ponzano, B.3
Mazzone, M.4
Rossi, M.5
Moracci, M.6
Petoukhov, M.V.7
Svergun, D.I.8
Bolognesi, M.9
-
62
-
-
20244389869
-
Triticum durum metallothionein: Isolation of the gene and structural characterization of the protein using solution scattering and molecular modeling
-
Bilecen, K., U. H. Ozturk, A. D. Duru, T. Sutlu, M. V. Petoukhov, D. I. Svergun, M. H. Koch, U. O. Sezerman, I. Cakmak, and Z. Sayers. 2005. Triticum durum metallothionein: isolation of the gene and structural characterization of the protein using solution scattering and molecular modeling. J. Biol. Chem. 280:13701-13711.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 13701-13711
-
-
Bilecen, K.1
Ozturk, U.H.2
Duru, A.D.3
Sutlu, T.4
Petoukhov, M.V.5
Svergun, D.I.6
Koch, M.H.7
Sezerman, U.O.8
Cakmak, I.9
Sayers, Z.10
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