-
1
-
-
0042573518
-
-
Proteins 1995;23;Suppl 3.
-
(1995)
Proteins
, vol.23
, Issue.SUPPL. 3
-
-
-
2
-
-
0042072521
-
-
Proteins 1997;Suppl 1.
-
(1997)
Proteins
, Issue.SUPPL. 1
-
-
-
3
-
-
0042573519
-
-
Proteins 1999;Suppl 3.
-
(1999)
Proteins
, Issue.SUPPL. 3
-
-
-
4
-
-
0041571245
-
-
Proteins 2001;Suppl. 5.
-
(2001)
Proteins
, Issue.SUPPL. 5
-
-
-
5
-
-
0036468385
-
Prediction of protein-protein interactions by docking methods
-
Smith R, Sternberg MJ. Prediction of protein-protein interactions by docking methods. Curr Opin Struct Biol 2002;12:28-35.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 28-35
-
-
Smith, R.1
Sternberg, M.J.2
-
6
-
-
0036606483
-
Priciples of docking: An overview of search algorithms and guide to scoring functions
-
Halperin I, Ma B, Wolfson H, Nussinov R. Priciples of docking: An overview of search algorithms and guide to scoring functions. Proteins 2002;47:409-443.
-
(2002)
Proteins
, vol.47
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
7
-
-
0032568556
-
New methods of structure refinement for macromolecular structure determination by NMR
-
Clore M, Gronenborn AM. New methods of structure refinement for macromolecular structure determination by NMR. Proc Natl Acad Sci USA 1998;95:5891-5898.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5891-5898
-
-
Clore, M.1
Gronenborn, A.M.2
-
8
-
-
0034919243
-
Dipolar couplings in macromolecular structure determination
-
Bax A, Kontaxis G, Tjandra N. Dipolar couplings in macromolecular structure determination. Methods Enzymol 2001;339:127-174.
-
(2001)
Methods Enzymol
, vol.339
, pp. 127-174
-
-
Bax, A.1
Kontaxis, G.2
Tjandra, N.3
-
9
-
-
0031565730
-
Modelling protein docking using shape complimentarity, electrostatics, and biochemical information
-
Gabb HA, Jackson RM, Sternberg MJE. Modelling protein docking using shape complimentarity, electrostatics, and biochemical information. J Mol Biol 1997;272:106-120.
-
(1997)
J Mol Biol
, vol.272
, pp. 106-120
-
-
Gabb, H.A.1
Jackson, R.M.2
Sternberg, M.J.E.3
-
10
-
-
0033562633
-
Use of pair potentials across protein interfaces in screening predicted docked complexes
-
Moont G, Gabb HA, Sternberg MJE. Use of pair potentials across protein interfaces in screening predicted docked complexes. Proteins 1999;35(3):364-373.
-
(1999)
Proteins
, vol.35
, Issue.3
, pp. 364-373
-
-
Moont, G.1
Gabb, H.A.2
Sternberg, M.J.E.3
-
11
-
-
0008275653
-
Modelling protein-protein and protein-DNA docking
-
In: Lengauer T, editor. Weinheim: Wiley-VCH
-
Moont G, Sternberg MJ. Modelling protein-protein and protein-DNA docking. Bioinformatics - from Genomes to Drugs, vol 1. In: Lengauer T, editor. Weinheim: Wiley-VCH; 2001. p 361-404.
-
(2001)
Bioinformatics - From Genomes to Drugs
, vol.1
, pp. 361-404
-
-
Moont, G.1
Sternberg, M.J.2
-
12
-
-
0034254909
-
Accurate and rapid docking of protein-protein complexes on the basis ofintermolecular nuclear Overhauser enhancement data and dipolar couplings by rigid body minimization
-
Clore GM. Accurate and rapid docking of protein-protein complexes on the basis ofintermolecular nuclear Overhauser enhancement data and dipolar couplings by rigid body minimization. Proc Natl Acad Sci USA 2000;97:9021-9025.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 9021-9025
-
-
Clore, G.M.1
-
14
-
-
0037199418
-
Solution structure and dynamics of the human - Escherichia coli thioredoxin chimera: Insights into thermodynamic stability
-
Dangi B, Dobrodumov AV, Louis JM, Gronenborn AM. Solution structure and dynamics of the human - Escherichia coli thioredoxin chimera: Insights into thermodynamic stability. Biochemistry 2002;41:9376-9388.
-
(2002)
Biochemistry
, vol.41
, pp. 9376-9388
-
-
Dangi, B.1
Dobrodumov, A.V.2
Louis, J.M.3
Gronenborn, A.M.4
-
15
-
-
0032528033
-
Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase
-
Cornilescu G, Marquardt JL, Ottiger M, Bax A. Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase. J Am Chem Soc 1998;120:6836-6837.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 6836-6837
-
-
Cornilescu, G.1
Marquardt, J.L.2
Ottiger, M.3
Bax, A.4
-
16
-
-
0033145058
-
Order matrix analysis of residual dipolar couplings using singular value decomposition
-
Losonczi JA, Andrec M, Fischer MW, Prestegard JH. Order matrix analysis of residual dipolar couplings using singular value decomposition. J Magn Reson 1999;138:334-342.
-
(1999)
J Magn Reson
, vol.138
, pp. 334-342
-
-
Losonczi, J.A.1
Andrec, M.2
Fischer, M.W.3
Prestegard, J.H.4
-
17
-
-
0041571244
-
-
March
-
Moont G, Smith GR, Sternbergy MJE. 3D-Dock, incorporating FTDock (version 2.0), RPScore, and Multidock. March 2001. http://www.bmm.icnet.uk.
-
(2001)
3D-Dock, incorporating FTDock (Version 2.0), RPScore, and Multidock
-
-
Moont, G.1
Smith, G.R.2
Sternbergy, M.J.E.3
-
18
-
-
0034685436
-
Prediction of sterically induced alignment in a dilute liquid crystalline phase: Aid to protein structure determination by NMR
-
Zweckstetter M, Bax A. Prediction of sterically induced alignment in a dilute liquid crystalline phase: aid to protein structure determination by NMR. J Am Chem Soc 2000;122:3791-3792.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 3791-3792
-
-
Zweckstetter, M.1
Bax, A.2
-
19
-
-
0034884233
-
A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings
-
Dosset P, Hus JC, Marion D, Blackledge M. A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings. J Biomol NMR 2001;20:223-231.
-
(2001)
J Biomol NMR
, vol.20
, pp. 223-231
-
-
Dosset, P.1
Hus, J.C.2
Marion, D.3
Blackledge, M.4
-
20
-
-
0031473847
-
SWISS-MODEL the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex N, Peitsch MC. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 1997;18:2714-2723. http://www.expasy.ch./spdbv/
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
21
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi R, Billeter M, Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graphics 1996;14:51-55.
-
(1996)
J Mol Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
22
-
-
0030936560
-
Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein HPr on the N-terminal domain of Enzyme I of the Escherichia coli phosphotransferase system
-
Garrett DS, Seok Y-J, Peterkoksky A, Clore GM, Gronenborn AM. Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein HPr on the N-terminal domain of Enzyme I of the Escherichia coli phosphotransferase system. Biochemistry 1997;36:4393-4398.
-
(1997)
Biochemistry
, vol.36
, pp. 4393-4398
-
-
Garrett, D.S.1
Seok, Y.-J.2
Peterkoksky, A.3
Clore, G.M.4
Gronenborn, A.M.5
-
23
-
-
0030586030
-
The first step in sugar transport: Crystal structure of the amino terminal domain of enzyme I of the E. coli PEP:sugar phosphotransferase system and a model of the phosphotransfer complex with HPr
-
Liao DI, Silverstone E, Seok YJ, Lee BR, Peterkofsky A, Davies DR.. The first step in sugar transport: crystal structure of the amino terminal domain of enzyme I of the E. coli PEP:sugar phosphotransferase system and a model of the phosphotransfer complex with HPr. Structure 1996;4:861-872.
-
(1996)
Structure
, vol.4
, pp. 861-872
-
-
Liao, D.I.1
Silverstone, E.2
Seok, Y.J.3
Lee, B.R.4
Peterkofsky, A.5
Davies, D.R.6
-
24
-
-
0027340388
-
The 2.0 Å resolution structure of the Escherichia coli histidine-containing phosphocarrier protein HPr: A redetermination
-
Jia Z, Quail JW, Waygood EB, Delbaere LT. The 2.0 Å resolution structure of the Escherichia coli histidine-containing phosphocarrier protein HPr: a redetermination. J Biol Chem 1993;268:22490-22501.
-
(1993)
J Biol Chem
, vol.268
, pp. 22490-22501
-
-
Jia, Z.1
Quail, J.W.2
Waygood, E.B.3
Delbaere, L.T.4
-
25
-
-
0030585429
-
Crystal structures of reduced, oxidized and mutated human thioredoxins: Evidence for a regulatory homodimer
-
Weichsel A, Gasdaska JR, Powis G, Montfort WR. Crystal structures of reduced, oxidized and mutated human thioredoxins: evidence for a regulatory homodimer. Structure 1996;4:735-751.
-
(1996)
Structure
, vol.4
, pp. 735-751
-
-
Weichsel, A.1
Gasdaska, J.R.2
Powis, G.3
Montfort, W.R.4
-
26
-
-
0025319619
-
Crystal structure of thioredoxin from Escherichia coli at 1.68 angstroms resolution
-
Katti SK, Lemaster DM, Eklund H. Crystal structure of thioredoxin from Escherichia coli at 1.68 angstroms resolution. J Mol Biol 1990;212:167-184.
-
(1990)
J Mol Biol
, vol.212
, pp. 167-184
-
-
Katti, S.K.1
Lemaster, D.M.2
Eklund, H.3
-
27
-
-
0031019983
-
Solution structure of the 30 kDa N-terminal domain of Enzyme I of the Escherichia coli phosphoenolpyruvate: Sugar phosphotransferase system by multidimensional NMR
-
Garrett DS, et al. Solution structure of the 30 kDa N-terminal domain of Enzyme I of the Escherichia coli phosphoenolpyruvate: sugar phosphotransferase system by multidimensional NMR. Biochemistry 1997;36:2517-2530.
-
(1997)
Biochemistry
, vol.36
, pp. 2517-2530
-
-
Garrett, D.S.1
-
28
-
-
0028360724
-
The high-resolution structure of the histidine-containing phosphocarrier protein hpr from Escherichia coli determined by restrained molecular dynamics from nmr nuclear overhauser effect data
-
Van Nuland NAJ, Hangyi AJ, Van Schaik RC, Berendsen HJC, Van Gunsteren WF, Scheek RM, Robillard GT. The high-resolution structure of the histidine-containing phosphocarrier protein hpr from Escherichia coli determined by restrained molecular dynamics from nmr nuclear overhauser effect data. J Mol Biol 1994;237:544-559.
-
(1994)
J Mol Biol
, vol.237
, pp. 544-559
-
-
Van Nuland, N.A.J.1
Hangyi, A.J.2
Van Schaik, R.C.3
Berendsen, H.J.C.4
Van Gunsteren, W.F.5
Scheek, R.M.6
Robillard, G.T.7
-
29
-
-
0028773644
-
The high-resolution three-dimensional solution structures of the oxidized and reduced states of human thioredoxin
-
Qin J, Clore GM, Gronenborn AM. The high-resolution three-dimensional solution structures of the oxidized and reduced states of human thioredoxin. Structure 1994;2:503-522.
-
(1994)
Structure
, vol.2
, pp. 503-522
-
-
Qin, J.1
Clore, G.M.2
Gronenborn, A.M.3
-
30
-
-
0028774178
-
High-resolution solution structures of oxidized and reduced Escherichia coli thioredoxin
-
Jeng MF, Campbell AP, Begley T, Holmgren A, Case DA, Wright PE, Dyson HJ. High-resolution solution structures of oxidized and reduced Escherichia coli thioredoxin. Structure 1994;2:853-868.
-
(1994)
Structure
, vol.2
, pp. 853-868
-
-
Jeng, M.F.1
Campbell, A.P.2
Begley, T.3
Holmgren, A.4
Case, D.A.5
Wright, P.E.6
Dyson, H.J.7
-
31
-
-
0033551495
-
Domain orientation and dynamics in multidomain proteins from residual dipolar couplings
-
Fischer MW, Losonczi JA, Weaver JL, Prestegard JH. Domain orientation and dynamics in multidomain proteins from residual dipolar couplings. Biochemistry. 1999;38:9013-9022.
-
(1999)
Biochemistry
, vol.38
, pp. 9013-9022
-
-
Fischer, M.W.1
Losonczi, J.A.2
Weaver, J.L.3
Prestegard, J.H.4
-
32
-
-
0034972906
-
What is the average conformation of bacteriophage T4 lysozyme in solution? A domain orientation study using dipolar couplings measured by solution NMR
-
Goto NK, Skrynnikov NR, Dahlquist FW, Kay LE. What is the average conformation of bacteriophage T4 lysozyme in solution? A domain orientation study using dipolar couplings measured by solution NMR. J Mol Biol 2001;308:745-764.
-
(2001)
J Mol Biol
, vol.308
, pp. 745-764
-
-
Goto, N.K.1
Skrynnikov, N.R.2
Dahlquist, F.W.3
Kay, L.E.4
-
33
-
-
0034684181
-
Measurement of proton, nitrogen and carbonyl chemical shielding anisotropies in a protein dissolved in a dilute liquid crystalline phase
-
Cornilescu G, Bax A. Measurement of proton, nitrogen and carbonyl chemical shielding anisotropies in a protein dissolved in a dilute liquid crystalline phase. J Am Chem Soc 2000;122:10143-10154.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 10143-10154
-
-
Cornilescu, G.1
Bax, A.2
-
34
-
-
0033811768
-
DipoCoup: A versatile program for 3D-structure homology comparison based on residual dipolar couplings and pseudocontact shifts
-
Meiler J, Peti W, Griesinger C. DipoCoup: a versatile program for 3D-structure homology comparison based on residual dipolar couplings and pseudocontact shifts. J Biomol NMR 2000;17:283-294.
-
(2000)
J Biomol NMR
, vol.17
, pp. 283-294
-
-
Meiler, J.1
Peti, W.2
Griesinger, C.3
-
35
-
-
0037039335
-
Mapping protein-protein interactions in solution by NMR spectroscopy
-
Zuiderweg ERP. Mapping protein-protein interactions in solution by NMR spectroscopy. Biochemistry 2002;41:1-7
-
(2002)
Biochemistry
, vol.41
, pp. 1-7
-
-
Zuiderweg, E.R.P.1
-
36
-
-
0034212826
-
BIGGER: A new (soft) docking algorithm for predicting protein interactions
-
Palma PN, Krippahl L, Wampler JE, Moura JJ. BIGGER: a new (soft) docking algorithm for predicting protein interactions. Proteins 2000;39:372-384.
-
(2000)
Proteins
, vol.39
, pp. 372-384
-
-
Palma, P.N.1
Krippahl, L.2
Wampler, J.E.3
Moura, J.J.4
-
37
-
-
0034646441
-
Heteronuclear NMR and soft docking: An experimental approach for a structural model of the cytochrome c553-ferredoxin complex
-
Morelli X, Dolla A, Czjzek M, Palma PN, Blasco F, Krippahl L, Moura JJ, Guerlesquin F. Heteronuclear NMR and soft docking: an experimental approach for a structural model of the cytochrome c553-ferredoxin complex. Biochemistry. 2000;39:2530-2537.
-
(2000)
Biochemistry
, vol.39
, pp. 2530-2537
-
-
Morelli, X.1
Dolla, A.2
Czjzek, M.3
Palma, P.N.4
Blasco, F.5
Krippahl, L.6
Moura, J.J.7
Guerlesquin, F.8
-
38
-
-
0034808070
-
A novel approach for assessing macromolecular complexes combining soft-docking calculations with NMR data
-
Morelli XJ, Palma PN, Guerlesquin F, Rigby AC. A novel approach for assessing macromolecular complexes combining soft-docking calculations with NMR data. Protein Sci 2001;10:2131-2137.
-
(2001)
Protein Sci
, vol.10
, pp. 2131-2137
-
-
Morelli, X.J.1
Palma, P.N.2
Guerlesquin, F.3
Rigby, A.C.4
-
39
-
-
0034981694
-
Structure prediction of protein complexes by an NMR-based protein docking algorithm
-
Kohlbache 0, Burchardt A, Moll A, Hildebrandt A, Bayer P, Lenhof HP. Structure prediction of protein complexes by an NMR-based protein docking algorithm. J Biomol NMR 2001;20:15-21.
-
(2001)
J Biomol NMR
, vol.20
, pp. 15-21
-
-
Kohlbache, O.1
Burchardt, A.2
Moll, A.3
Hildebrandt, A.4
Bayer, P.5
Lenhof, H.P.6
-
40
-
-
0034167156
-
Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings
-
Al Hashimi HM, Valafar H, Terrell M, Zartler ER, Eidsness MK, Prestegard JH. Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings. J Magn Res 2000;143:402-406.
-
(2000)
J Magn Res
, vol.143
, pp. 402-406
-
-
Al Hashimi, H.M.1
Valafar, H.2
Terrell, M.3
Zartler, E.R.4
Eidsness, M.K.5
Prestegard, J.H.6
-
41
-
-
0033577269
-
Improving the packing and accuracy of NMR structures with a pseudopotential for the radius of gyration
-
Kuszewski J, Gronenborn AM, Clore GM. Improving the packing and accuracy of NMR structures with a pseudopotential for the radius of gyration. J Am Chem Soc 1999;121:2337-2338.
-
(1999)
J Am Chem Soc
, vol.121
, pp. 2337-2338
-
-
Kuszewski, J.1
Gronenborn, A.M.2
Clore, G.M.3
-
42
-
-
0034306122
-
TROSY and CRINEPT: NMR with large molecular and supramolecular structures in solution
-
Riek R, Pervushin K, Wuthrich K. TROSY and CRINEPT: NMR with large molecular and supramolecular structures in solution. Trends Biochem Sci 2000;25:462-468.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 462-468
-
-
Riek, R.1
Pervushin, K.2
Wuthrich, K.3
-
43
-
-
0030596171
-
Characterizing the use of perdeuteration in NMR studies of large proteins C-13, N-15 and H-1 assignments of human carbonic anhydrase II
-
Venters RA, Farmer BT, Fierke CA, et al. Characterizing the use of perdeuteration in NMR studies of large proteins C-13, N-15 and H-1 assignments of human carbonic anhydrase II. J Mol Biol 1996;264:1101-1116.
-
(1996)
J Mol Biol
, vol.264
, pp. 1101-1116
-
-
Venters, R.A.1
Farmer, B.T.2
Fierke, C.A.3
-
44
-
-
0033582287
-
Chemical ligation of folded recombinant proteins: Segmental isotopic labeling of domains for NMR studies
-
Xu R, Ayers B, Cowburn D, Muir TW. Chemical ligation of folded recombinant proteins: Segmental isotopic labeling of domains for NMR studies. Proc Natl Acad Sci USA 1999;96:388-393.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 388-393
-
-
Xu, R.1
Ayers, B.2
Cowburn, D.3
Muir, T.W.4
-
45
-
-
0032898682
-
A robust and cost-effective method for the production of Val, Leu, Ile (delta 1) methyl-protonated N-15-, C-13-, H-2-labeled proteins
-
Goto NK, Gardner KH, Mueller GA, Willis RC, Kay LE. A robust and cost-effective method for the production of Val, Leu, Ile (delta 1) methyl-protonated N-15-, C-13-, H-2-labeled proteins. J Biomol NMR 1999;13:369-374.
-
(1999)
J Biomol NMR
, vol.13
, pp. 369-374
-
-
Goto, N.K.1
Gardner, K.H.2
Mueller, G.A.3
Willis, R.C.4
Kay, L.E.5
|