Crystal versus solution structures of thiamine diphosphate-dependent enzymes

Journal of Biological Chemistry

Volumn 275, Issue 1, 2000, Pages 297-302

  Svergun, Dmitri I ^a,b,d   Petoukhov, Maxim V ^b   Koch, Michel H J ^a   König, Stephan ^c  

^a DESY   (Germany)

^b SHUBNIKOV INSTITUTE OF CRYSTALLOGRAPHY   (Russian Federation)

^c MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^d EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; COCARBOXYLASE; FUNGAL ENZYME; PYRUVATE DECARBOXYLASE; PYRUVATE OXIDASE; TRANSKETOLASE;

ARTICLE; CATALYSIS; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; ENZYME STRUCTURE; LACTOBACILLUS PLANTARUM; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; ZYMOMONAS MOBILIS;

ARTIFACTS; CRYSTALLOGRAPHY; MODELS, MOLECULAR; PROTEIN STRUCTURE, QUATERNARY; PYRUVATE DECARBOXYLASE; PYRUVATE OXIDASE; SACCHAROMYCES CEREVISIAE; SCATTERING, RADIATION; SOLUTIONS; SYNCHROTRONS; THIAMINE PYROPHOSPHATE; TRANSKETOLASE; X-RAYS; ZYMOMONAS;

BACTERIA (MICROORGANISMS); LACTOBACILLUS PLANTARUM; SACCHAROMYCES CEREVISIAE; ZYMOMONAS MOBILIS;

EID: 0034614372     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.275.1.297     Document Type: Article

References (49)

1. Feigin, L. A., and Svergun, D. I. (1987) Structure Analysis by Small-angle X-ray and Neutron Scattering, Plenum Press, New York
2. Ninio, J., Luzzati, V., and Yaniv, M. (1972) J. Mol. Biol. 71, 217-229
3. Pavlov, M. Y., and Fedorov, B. A. (1983) Biopolymers 22, 1507-1522
4. Grossmaan, G., Abraham, Z. H. L., Adman, E. T., Neu, M., Eady, R. R., Smith, B. E., and Hasnain, S. S. (1993) Biochemistry 32, 7360-7366
5. Svergun, D. I., Barberato, C., and Koch, M. H. J. (1995) J. Appl, Crystallogr. 28, 768-773
6. Svergun, D. I., Richards, S., Koch, M. H. J., Sayers, Z., Kuprin, S., and Zaccai, G. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 2267-2272
7. Svergun, D. I. (1994) Acta Crystallogr. Sect. A 50, 391-402
8. Bilgin, N., Ehrenberg, M., Ebel, C., Zaccai, G., Sayers, Z., Koch, M. H. J., Svergun, D. I., Barberato, C., Volkov, V., Nissen, P., and Nyborg, J. (1998) Biochemistry 37, 8163-8172
9. Svergun, D. I., Aldag, I., Sieck, T., Altendorf, K.-H., Koch, M. H. J., Kane, D. J., Kozin, M. B., and Grueber, G. (1998) Biophys. J. 76, 2212-2219
10. Aleshin, A. E., Malfois, M., Liu, X., Kim, C. S., Fromm, H. J., Honzatko, R. B., Koch, M. H. J., and Svergun, D. I. (1999) Biochemistry 38, 8359-8366
11. Svergun, D. I., Barberato, C., Koch, M. H. J., Fetler, L., and Vachette, P. (1997) Proteins Struct. Funct. Genet. 27, 110-117
12. Stone, D. B., Hjelm, R. P., Jr., and Mendelson, R. A. (1999) Biochemistry 38, 4938-4947
13. Schellenberger, A. (ed) (1998) Biochim. Biophys. Acta 1385, 173-428
14. Lindqvist, Y., Schneider, G., Ermler, U., and Sundström, M. (1992) EMBO J. 11, 2373-2379
15. Nikkola, M., Lindqvist, Y., and Schneider, G. (1994) J. Mol. Biol. 238, 387-404
16. Muller, Y. A., and Schulz, G. E. (1993) Science 259, 965-967
17. Muller, Y. A., Schumacher, G., Rudolph, R., and Schulz, G. E. (1994) J. Mol. Biol. 237, 315-335
18. Dyda, F., Furey, W., Swaminathan, S., Sax, M., Farrenkopf, B., and Jordan, F. (1993) Biochemistry 32, 6165-6170
19. Arjunan, P., Umland, T., Dyda, F., Swaminathan, S., Furey, W., Sax, M., Farrenkopf, B., Gao, Y., Zhang, D., and Jordan, F. (1996) J. Mol. Biol. 256, 590-600
20. Lu, G., Dobritzsch, D., König, S., and Schneider, G. (1997) FEBS Lett. 403, 249-253
21. Dobritzsch, D., König, S., Schneider, G., and Lu, G. (1998) J. Biol. Chem. 273, 20196-20204
22. Pletcher, J., and Sax, M. J. (1972) J. Am. Chem. Soc. 94, 3998-4005
23. Schellenberger, A. (1967) Angew. Chem. Int. Ed. Engl. 79, 1050-1061
24. Hübner, G., Weidhase, R., and Schellenberger, A. (1978) Eur. J. Biochem. 92, 175-181
25. Dietrich, A., and König, S. (1997) FEBS Lett. 400, 42-44
26. Printz, M. P., and Gounaris, A. D. (1972) J. Biol. Chem. 247, 7109-7115
27. König, S., Hühner, G., and Schellenberger, A. (1990) Biomed. Biochim. Acta 49, 465-471
28. König, S., Svergun, D., Koch, M. H. J., Hübner, G., and Schellenberger, A. (1992) Biochemistry 31, 8726-8731
29. König, S., Svergun, D., Koch, M. H. J., Hübner, G., and Schellenberger, A. (1993) Eur. Biophys. J. 22, 185-194
30. König, S., Svergun, D. I., Volkov, V. V., Feigin, L. A., and Koch, M. H. J. (1998) Biochemistry 37, 5329-5334
31. Sieber, M., König, S., Hübner, G., and Schellenberger, A. (1983) Biomed. Biochim. Acta 42, 343-349
32. Dobritzsch, D. (1995) Characterisation of Chemically Modified States of Pyruuate Decarboxylase from Brewers' Yeast. Diploma thesis, MartinLuther-Universität Halle-Wittenberg
33. Baumann, S. (1997) Study of the Functional Role of Cysteine Residues in Various Yeast Pyruvate Decarboxylases for the Substrate Activation Process. Diploma thesis, Martin-Luther-Universität Halle-Wittenberg
34. Wikner, C., Meshalkina, L., Nilsson, U., Nikkola, M., Lindqvist, Y., Sundström, M., and Schneider, G. (1994) J. Biol. Chem. 269, 32144-32150
35. Schumacher, G., Möllering, H., Geuss, U., Fischer, S., Tischer, W., Deneke, U., and Krease, G. B. (1991) in Proceedings of the International Meeting on the Biochemistry and Physiology of Thiamin Diphosphate Enzymes, October 1990, Blaubeuren, Germany (Bisswanger, H., and Ullrich, J., eds) pp. 300-307, VCH Verlagsgesellschaft mbH, Weinheim, Germany
36. Koch, M. H. J., and Bordas, J. (1983) Nucl. Instrum. Methods 208, 461-469
37. Boulin, C., Kempf, R., Koch, M. H. J., and McLaughlin, S. M. (1986) Nucl. Instrum. Methods A249, 399-407
38. Boulin, C. J., Kempf, R., Gabriel, A., and Koch, M. H. J. (1988) Nucl. Instrum. Methods A269, 312-320
39. Gabriel, A., and Dauvergne, F. (1982) Nucl. Instrum. Methods 201, 223-224
40. Svergun, D. I., Semenyuk, A. V., and Feigin, L. A. (1988) Acta Crystallogr. Sect. A 44, 244-250
41. Svergun, D. I. (1991) J. Appl. Crystallogr. 24, 485-492
42. Svergun, D. I. (1992) J. Appl. Crystallogr. 25, 495-503
43. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F., Jr., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T., and Tasumi, M. (1977) J. Mol. Biol. 112, 535-542
44. Svergun, D. I., Volkov, V. V., Kozin, M. B., Stuhrmann, H. B., Barberato, C., and Koch, M. H. J. (1997) J. Appl. Crystallogr. 30, 798-802
45. Hübner, G., König, S., Schellenberger, A., and Koch, M. H. J. (1990) FEBS Lett. 266, 17-20
46. Furey, W., Arjunan, P., Chen, L., Sax, M., Guo, F., Zhang, D., and Jordan, F. (1998) Biochim. Biophys. Acta 1386, 253-270
47. Alvarez, F. J., Ermer, J., Hübner, G., Schellenberger, A., and Schowen, R. L. (1995) J. Am. Chem. Soc. 117, 1678-1683
48. Sun, S. X., Duggleby, R. G., and Schowen, R. L. (1995) J. Am. Chem. Soc. 117, 7317-7322
49. Furey, W., Arjunan, P., Chen, L., Dyda, F., Umland, T., Swaminathan, S., Sax, M., Jordan, F., Farrenkopf, B., Gao, Y., and Zhang, D. (1996) Proceedings of the Fourth International Meeting on the Biochemistry and Physiology of Thiamin Diphosphate Enzymes, 1996 (Bisswanger, H., and Schellenberger, A., eds) pp. 103-124, A.u. C. Intemann Wissenschafleicher Verlag, Prien, Germany