-
1
-
-
0142236211
-
On the approximation of largest common subtrees and largest common point sets
-
T. Akutsu and M. M. Halldorson. On the approximation of largest common subtrees and largest common point sets. Theoretical Computer Science, 233:33-50, 2000.
-
(2000)
Theoretical Computer Science
, vol.233
, pp. 33-50
-
-
Akutsu, T.1
Halldorson, M.M.2
-
2
-
-
0023176681
-
Determinants of a protein fold. Unique features of the globin amino acid sequences
-
D. Bashford, C. Chothia, and A.M. Lesk. Determinants of a protein fold. Unique features of the globin amino acid sequences. J Mol Biol., 196(1):199-216, 1987.
-
(1987)
J Mol Biol
, vol.196
, Issue.1
, pp. 199-216
-
-
Bashford, D.1
Chothia, C.2
Lesk, A.M.3
-
4
-
-
0242333224
-
Geometry helps in bottleneck matching and related problems
-
Alon Efrat, Alon Itai, and Matthew J. Katz. Geometry helps in bottleneck matching and related problems. Algorithmica, 31(1):1-28, 2001.
-
(2001)
Algorithmica
, vol.31
, Issue.1
, pp. 1-28
-
-
Efrat, A.1
Itai, A.2
Katz, M.J.3
-
5
-
-
0034531045
-
Structure Comparison and Structure Patterns
-
I. Eidhammer, I. Jonassen, and WR. Taylor. Structure Comparison and Structure Patterns. J Comput Biol., 7(5):685-716, 2000.
-
(2000)
J Comput Biol
, vol.7
, Issue.5
, pp. 685-716
-
-
Eidhammer, I.1
Jonassen, I.2
Taylor, W.R.3
-
6
-
-
0030310317
-
Assessing the performance of fold recognition methods by means of a comprehensive benchmark
-
In L. Hunter and T. Klein, editors, Singapore, World Scientific Press
-
D. Fischer, A. Elofsson, D. Rice, and D. Eisenberg. Assessing the performance of fold recognition methods by means of a comprehensive benchmark. In L. Hunter and T. Klein, editors, In Proc. Pacific Symposium on Biocomputing, Singapore, 1996. World Scientific Press.
-
(1996)
Proc. Pacific Symposium on Biocomputing
-
-
Fischer, D.1
Elofsson, A.2
Rice, D.3
Eisenberg, D.4
-
7
-
-
0029025913
-
A Geometry-based Suite of Molecular Docking Processes
-
D. Fischer, S. L. Lin, H.J. Wolfson, and R. Nussinov. A Geometry-based Suite of Molecular Docking Processes. J. Mol. Biol., 248:459-477, 1995.
-
(1995)
J. Mol. Biol
, vol.248
, pp. 459-477
-
-
Fischer, D.1
Lin, S.L.2
Wolfson, H.J.3
Nussinov, R.4
-
9
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
L. Holm and C. Sander. Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233(1):123-38, 1993.
-
(1993)
J. Mol. Biol
, vol.233
, Issue.1
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
10
-
-
84893482610
-
A solution for the best rotation to relate two sets of vectors
-
W. Kabsch. A solution for the best rotation to relate two sets of vectors. Acta Crystallogr., A32:922-923, 1978.
-
(1978)
Acta Crystallogr
, vol.32
, pp. 922-923
-
-
Kabsch, W.1
-
11
-
-
0001277196
-
Metric properties of the root-mean-square deviation of vector sets
-
TK. Kaindl and B. Steipe. Metric properties of the root-mean-square deviation of vector sets. Acta Cryst., A53:809, 1997.
-
(1997)
Acta Cryst
, vol.53
, pp. 809
-
-
Kaindl, T.K.1
Steipe, B.2
-
12
-
-
0035874115
-
Automated multiple structure alignment and detection of a common substructural motif
-
N. Leibowitz, Z.Y. Fligelman, R. Nussinov, and H.J. Wolfson. Automated multiple structure alignment and detection of a common substructural motif. Proteins, 43(3):235-45, 2001.
-
(2001)
Proteins
, vol.43
, Issue.3
, pp. 235-245
-
-
Leibowitz, N.1
Fligelman, Z.Y.2
Nussinov, R.3
Wolfson, H.J.4
-
13
-
-
0034924161
-
MUSTA-a general, efficient, automated method for multiple structure alignment and detection of common motifs: Application to proteins
-
N. Leibowitz, R. Nussinov, and H.J. Wolfson. MUSTA-a general, efficient, automated method for multiple structure alignment and detection of common motifs: application to proteins. J Comput Biol., 8(2):93-121, 2001.
-
(2001)
J Comput Biol
, vol.8
, Issue.2
, pp. 93-121
-
-
Leibowitz, N.1
Nussinov, R.2
Wolfson, H.J.3
-
14
-
-
0034065350
-
Computational methods for the structural alignment of molecules
-
C. Lemmen and T. Lengauer. Computational methods for the structural alignment of molecules. J Comput Aided Mol Des, 14(3):215-32, March 2000.
-
(2000)
J Comput Aided Mol Des
, vol.14
, Issue.3
, pp. 215-232
-
-
Lemmen, C.1
Lengauer, T.2
-
17
-
-
0025275776
-
Use of Techniques Derived from Graph Theory to Compare Secondary Structure Motifs in Proteins
-
E.M. Mitchel, P.J. Artymiuk, D.W. Rice, and P. Willet. Use of Techniques Derived from Graph Theory to Compare Secondary Structure Motifs in Proteins. J. Mol. Biol., 212:151-166, 1989.
-
(1989)
J. Mol. Biol
, vol.212
, pp. 151-166
-
-
Mitchel, E.M.1
Artymiuk, P.J.2
Rice, D.W.3
Willet, P.4
-
18
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
A.G. Murzin, S.E. Brenner, T. Hubbard, and C. Chothia. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247:536-540, 1995.
-
(1995)
J. Mol. Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
19
-
-
0025719208
-
Efficient Detection of three-dimensional strcutral motifs in biological macromolecules by computer vision techniques
-
December, Biophysics
-
R. Nussinov and H.J. Wolfson. Efficient Detection of three-dimensional strcutral motifs in biological macromolecules by computer vision techniques. Proc. Natl. Acad. Sci. USA, 88:10495-10499, December 1991. Biophysics.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 10495-10499
-
-
Nussinov, R.1
Wolfson, H.J.2
-
20
-
-
0029948001
-
SSAP: Sequential Structure Alignment Program for Protein Structure Comparison
-
R.F. Doolitle, editor, Academic Press, San Diego
-
C.A. Orengo and W.R. Taylor. SSAP: Sequential Structure Alignment Program for Protein Structure Comparison. In R.F. Doolitle, editor, Methods in Enzymology, Vol. 266, pages 617-635. Academic Press, San Diego, 1996.
-
(1996)
Methods in Enzymology
, vol.266
, pp. 617-635
-
-
Orengo, C.A.1
Taylor, W.R.2
-
21
-
-
0004319546
-
-
(chapter: Discrete Geometric Shapes: Matching, Interpolation, and Approximation). Elsevier
-
J.-R. Sack and J. Urrutia. Handbook of Computational Geometry (chapter: Discrete Geometric Shapes: Matching, Interpolation, and Approximation). Elsevier, 2000.
-
(2000)
Handbook of Computational Geometry
-
-
Sack, J.-R.1
Urrutia, J.2
-
22
-
-
0028940058
-
An Automated Robotics-Based Technique for Biomolecular Docking and Matching allowing Hinge-Bending Motion
-
B. Sandak, R. Nussinov, and H.J. Wolfson. An Automated Robotics-Based Technique for Biomolecular Docking and Matching allowing Hinge-Bending Motion. Computer Applications in the Biosciences (CABIOS), 11:87-99, 1995.
-
(1995)
Computer Applications in the Biosciences (CABIOS)
, vol.11
, pp. 87-99
-
-
Sandak, B.1
Nussinov, R.2
Wolfson, H.J.3
-
23
-
-
0034564290
-
Alignment of Flexible Protein Structures
-
The AAAI press, August
-
M. Shatsky, Z.Y. Fligelman, R. Nussinov, and H.J Wolfson. Alignment of Flexible Protein Structures. In 8th International Conference on Intelligent Systems for Molecular Biology, pages 329-343. The AAAI press, August 2000.
-
(2000)
8Th International Conference on Intelligent Systems for Molecular Biology
, pp. 329-343
-
-
Shatsky, M.1
Fligelman, Z.Y.2
Nussinov, R.3
Wolfson, H.J.4
-
24
-
-
0036681439
-
Flexible protein alignment and hinge detection. Proteins: Structure
-
M. Shatsky, H.J Wolfson, and R. Nussinov. Flexible protein alignment and hinge detection. Proteins: Structure, Function, and Genetics, 48:242-256, 2002.
-
(2002)
Function, and Genetics
, vol.48
, pp. 242-256
-
-
Shatsky, M.1
Wolfson, H.J.2
Nussinov, R.3
-
25
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (Ce) of the optimal path
-
I. Shindyalov and P. Bourne. Protein structure alignment by incremental combinatorial extension (ce) of the optimal path. Protein Engineering, 11(9):739-747, 1998.
-
(1998)
Protein Engineering
, vol.11
, Issue.9
, pp. 739-747
-
-
Shindyalov, I.1
Bourne, P.2
-
26
-
-
0024349252
-
Protein structure alignment
-
W. R. Taylor and C. A. Orengo. Protein structure alignment. J. Mol. Biol., 208:1-22, 1989.
-
(1989)
J. Mol. Biol
, vol.208
, pp. 1-22
-
-
Taylor, W.R.1
Orengo, C.A.2
-
27
-
-
0025744920
-
Detection of Common Three-Dimensional Substructures in Proteins
-
G. Vriend and C. Sander. Detection of Common Three-Dimensional Substructures in Proteins. Proteins, 11:52-58, 1991.
-
(1991)
Proteins
, vol.11
, pp. 52-58
-
-
Vriend, G.1
Sander, C.2
-
28
-
-
0031721203
-
Regression analysis of multiple protein structures
-
T.D. Wu, S.C. Schmidler, and T. Hastie. Regression analysis of multiple protein structures. J Comput Biol, 5(3):585-595, 1998.
-
(1998)
J Comput Biol
, vol.5
, Issue.3
, pp. 585-595
-
-
Wu, T.D.1
Schmidler, S.C.2
Hastie, T.3
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