Pseudo-response Regulator 7 and 9 are partially redundant genes essential for the temperature responsiveness of the Arabidopsis circadian clock

Plant Cell

Volumn 17, Issue 3, 2005, Pages 791-803

  Salomé, Patrice A ^a   McClung, C Robertson ^a  

^a Dartmouth College   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; FUNGI; MUTAGENESIS; PLANTS (BOTANY);

LIGHT INPUT PATHWAYS; PHOTOCYCLES; THERMOCYCLES;

GENES;

BACTERIA; FUNGI; GENES; MUTAGENS; PLANTS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BACTERIA (MICROORGANISMS); EMBRYOPHYTA;

ARABIDOPSIS PROTEIN;

ALLELE; ARABIDOPSIS; ARTICLE; CIRCADIAN RHYTHM; GENE; GENETICS; GROWTH, DEVELOPMENT AND AGING; MUTATION; PHENOTYPE; PHYSIOLOGY; TEMPERATURE; TRANSGENIC PLANT;

ALLELES; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CIRCADIAN RHYTHM; GENES, PLANT; MUTATION; PHENOTYPE; PLANTS, GENETICALLY MODIFIED; TEMPERATURE;

EID: 20444382245     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.104.029504     Document Type: Article

References (60)

1. Alabadí, D., Oyama, T., Yanovsky, M.J., Harmon, F.G., Más, P., and Kay, S.A. (2001). Reciprocal regulation between TOC1 and LHY/ CCA1 within the Arabidopsis circadian clock. Science 293, 880-883.
2. Alabadí, D., Yanovsky, M.J., Más, P., Harmer, S.L., and Kay, S.A. (2002). Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis. Curr. Biol. 12, 757-761.
3. Albrecht, U., and Eichele, G. (2003). The mammalian circadian clock. Curr. Opin. Genet. Dev. 13, 271-277.
4. Aronson, B.D., Johnson, K.A., Loros, J.J., and Dunlap, U.C. (1994). Negative feedback defining a circadian clock: Autoregulation of the clock gene frequency. Science 263, 1578-1584.
5. Ashmore, L.J., and Sehgal, A. (2003). A fly's eye view of circadian entrainment. J. Biol. Rhythms 18, 206-216.
6. Bechtold, N., Ellis, J., and Pelletier, G. (1993). In planta Agrobacterium mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C.R. Acad. Sci. Paris, Life Sciences 316, 1194-1199.
7. Bell-Pedersen, D. (2002). Circadian rhythms in Neurospora crassa. Mycol. Ser. 15, 187-214.
8. DeCoursey, P.J. (1990). Circadian photoentrainment in nocturnal mammals: Ecological overtones. Biol. Behav. 15, 213-238.
9. Eriksson, M.E., Hanano, S., Southern, M.M., Hall, A., and Millar, A.J. (2003). Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock. Planta 218, 159-162.
10. Eriksson, S., Hurme, R., and Rhen, M. (2002). Low-temperature sensors in bacteria. Philos. Trans. R. Soc. Lond. B Biol. Sci. 357, 887-893.
11. Froehlich, A.C., Liu, Y., Loros, J.J., and Dunlap, J.C. (2002). White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science 297, 815-819.
12. Froehlich, A.C., Loros, J.J., and Dunlap, J.C. (2003). Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY. Proc. Natl. Acad. Sci. USA 100, 5914-5919.
13. Golden, S.S., and Canales, S.R. (2004). Cyanobacterial circadian clocks-Timing is everything. Nat. Rev. Microbiol. 1, 181-190.
14. ZTL complex is required for proper regulation of circadian timing. Plant J. 40, 291-301.
15. Hwang, I., Chen, H.-C., and Sheen, J. (2002). Two-component signal transduction pathways in Arabidopsis. Plant Physiol. 129, 500-515.
16. Ito, S., Matsushika, A., Yamada, H., Sato, S., Kato, T., Tabata, S., Yamashino, T., and Mizuno, T. (2003). Characterization of the APRR9 Pseudo-Response Regulator belonging to the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol. 44, 1237-1245.
17. Johnson, C.H. (1992). Phase response curves: What can they tell us about circadian clocks? In Circadian Clocks from Cell to Human, T. Hiroshige and K. Honma, eds (Sapporo, Japan: Hokkaido University Press), pp. 209-249.
18. Kaczorowski, K.A., and Quail, P.M. (2003). Arabidopsis PSEUDO-RESPONSE REGULATOR 7 is a signaling intermediate in phytochrome-regulated seedling deetiolation and phasing of the circadian clock. Plant Cell 15, 2654-2665.
19. Karimi, M., Inzé, D., and Depicker, A. (2002). GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7, 193-195.
20. Krishnan, B., Levine, J.D., Lynch, M.K.S., Dowse, H.B., Funes, P., Hall, J.C., Hardin, P.E., and Dryer, S.E. (2001). A new role for cryptochrome in a Drosophila circadian oscillator. Nature 411, 313-317.
21. LeClerc, S., and Bartel, B. (2001). A library of Arabidopsis 35S-cDNA lines for identifying novel mutants. Plant Mol. Biol. 46, 695-703.
22. Liu, Y. (2003). Molecular mechanisms of entrainment in the Neurospora circadian clock. J. Biol. Rhythms 18, 195-205.
23. Loros, J.J., and Dunlap, J.C. (2001). Genetic and molecular analysis of circadian rhythms in Neurospora. Annu. Rev. Physiol. 63, 757-794.
24. Más, P., Alabadí, D., Yanovsky, M.J., Oyama, T., and Kay, S.A. (2003b). Dual role of TOC1 in the control of circadian and photomorphogenic responses in Arabidopsis. Plant Cell 15, 223-236.
25. Más, P., Kim, W.-Y., Somers, D.E., and Kay, S.A. (2003a). Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana. Nature 426, 567-570.
26. Matsushika, A., Makino, S., Kojima, M., and Mizuno, T. (2000). Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: Insight into the plant circadian clock. Plant Cell Physiol. 41, 1002-1012.
27. McClung, C.R., Salomé, P.A., and Michael, T.P. (2002). The Arabidopsis circadian system. In The Arabidopsis Book, C.R. Somerville and E.M. Meyerowitz, eds (Rockville, MD: American Society of Plant Biologists), doi/10.1199/tab.0044, http://www.aspb.org/publications/arabidopsis/.
28. Merrow, M., Brunner, M., and Roenneberg, T. (1999). Assignment of circadian function for the Neurospora clock gene frequency. Nature 399, 584-586.
29. Michael, T.P., and McClung, C.R. (2002). Phase-specific circadian clock regulatory elements in Arabidopsis thaliana. Plant Physiol. 130, 627-638.
30. Michael, T.P., Salomé, P.A., and McClung, C.R. (2003a). Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity. Proc. Natl. Acad. Sci. USA 100, 6878-6883.
31. Michael, T.P., Salomé, P.A., Yu, H.J., Spencer, T.R., Sharp, E.L., Alonso, J.M., Ecker, J.R., and McClung, C.R. (2003b). Enhanced fitness conferred by naturally occurring variation in the circadian clock. Science 302, 1049-1053.
32. Millar, A.J., Carré, I.A., Strayer, C.A., Chua, N.-H., and Kay, S.A. (1995). Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science 267, 1161-1163.
33. Millar, A.J., Short, S.R., Hiratsuka, K., Chua, N.-H., and Kay, S.A. (1992). Firefly luciferase as a reporter of regulated gene expression in higher plants. Plant Mol. Biol. Rep. 10, 324-337.
34. Mizoguchi, T., Wheatley, K., Hanzawa, Y., Wright, L., Mizoguchi, M., Song, H.-R., Carré, I.A., and Coupland, G. (2002). LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev. Cell 2, 629-641.
35. Mizuno, T. (2004). Plant response regulators implicated in signal transduction and circadian rhythm. Curr. Opin. Plant Biol. 7, 499-505.
36. Nakamichi, N., Matsushika, A., Yamashino, T., and Mizuno, T. (2003). Cell autonomous circadian waves of the APRR1/TOC1 quintet in an established cell line of Arabidopsis thaliana. Plant Cell Physiol. 44, 360-365.
37. Nowrousian, M., Duffield, G.E., Loros, J.J., and Dunlap, U.C. (2003). The frequency gene is required for temperature-dependent regulation of many clock-controlled genes in Neurospora crassa. Genetics 164, 923-933.
38. Panda, S., Hogenesch, J.B., and Kay, S.A. (2002a). Circadian rhythms from flies to human. Nature 417, 329-335.
39. Panda, S., Sato, T.K., Castrucci, A.M., Rollag, M.D., DeGrip, W.J., Hogenesch, J.B., Provencio, I., and Kay, S.A. (2002b). Melanopsin (Opn4) requirement for normal light-induced circadian phase shifting. Science 298, 2213-2215.
40. Park, D.H., Somers, D.E., Kim, Y.S., Choy, Y.H., Lim, H.K., Soh, M.S., Kim, H.J., Kay, S.A., and Nam, H.G. (1999). Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene. Science 285, 1579-1582.
41. Pittendrigh, C., Bruce, V., and Kaus, P. (1958). On the significance of transients in daily rhythms. Proc. Natl. Acad. Sci. USA 44, 965-973.
42. Plautz, J.D., Straume, M., Stanewsky, R., Jamison, C.F., Brandes, C., Dowse, H.B., Hall, J.C., and Kay, S.A. (1997). Quantitative analysis of Drosophila period gene transcription in living animals. J. Biol. Rhythms 12, 204-217.
43. Pregueiro, A.M., Price-Lloyd, N., Bell-Pedersen, D., Heintzen, C., Loros, J.J., and Dunlap, U.C. (2005). An essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles. Proc. Natl. Acad. Sci. USA 102, 2210-2215.
44. Ralph, M.R., and Menaker, M. (1988). A mutation of the circadian system in golden hamsters. Science 241, 1225-1227.
45. Rensing, L., and Ruoff, P. (2002). Temperature effect on entrainment, phase shifting, and amplitude of circadian clocks and its molecular bases. Chronobiol. Int. 19, 807-864.
46. Roenneberg, T., and Taylor, W. (2000). Automated recordings of bioluminescence with special reference to the analysis of circadian rhythms. Methods Enzymol. 305, 104-119.
47. Ruby, N.F., Brennan, T.J., Xie, X., Cao, V., Franken, P., Heller, H.C., and O'Hara, B.F. (2002). Role of melanopsin in circadian responses to light. Science 298, 2211-2212.
48. Salomé, P.A., Michael, T.P., Kearns, E.V., Fett-Neto, A.G., Sharrock, R.A., and McClung, C.R. (2002). The out of phase 1 mutant defines a role for PHYB in circadian phase control in Arabidopsis. Plant Physiol. 129, 1674-1685.
49. Schaffer, R., Ramsay, N., Samach, A., Corden, S., Putterill, J., Carré, I.A., and Coupland, G. (1998). LATE ELONGATED HYPOCOTYL, an Arabidopsis gene encoding a MYB transcription factor, regulates circadian rhythmicity and photoperiodic responses. Cell 93, 1219-1229.
50. Schmitz, O., Katayama, M., Williams, S.B., Kondo, T., and Golden, S.S. (2000). CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock. Science 289, 765-768.
51. Schultz, T.F., Kiyosue, T., Yanovsky, M., Wada, M., and Kay, S.A. (2001). A role for LKP2 in the circadian clock of Arabidopsis. Plant Cell 13, 2659-2670.
52. Somers, D.E., Webb, A.A.R., Pearson, M., and Kay, S.A. (1998). The short-period mutant, toc1-1, alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana. Development 125, 485-494.
53. Strayer, C., Oyama, T., Schultz, T.F., Raman, R., Somers, D.E., Más, P., Panda, S., Kreps, J.A., and Kay, S.A. (2000). Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289, 768-771.
54. Suri, V., Lanjuin, A., and Rosbash, M. (1999). TIMELESS-dependent positive and negative autoregulation in the Drosophila circadan clock. EMBO J. 18, 675-686.
55. van der Horst, G.T.J., et al. (1999). Mammalian Cry1 and Cry2 are essential for maintenance of circadian rhythms. Nature 398, 627-630.
56. Wang, Z.-Y., and Tobin, E.M. (1998). Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell 93, 1207-1217.
57. Williams, J.A., and Sehgal, A. (2001). Molecular components of the circadian system in Drosophila. Annu. Rev. Physiol. 63, 729-755.
58. Yoshii, T., Sakamoto, M., and Tomioka, K. (2002). A temperature-dependent timing mechanism is involved in the circadian system that drives locomotor rhythms in the fruit fly Drosophila melanogaster. Zoolog. Sci. 19, 841-850.
59. Zeng, H., Hardin, P.E., and Rosbash, M. (1994). Constitutive over-expression of the Drosophila period protein inhibits period mRNA cycling. EMBO J. 13, 3590-3598.
60. Farré, E.M., Harmer, S.L., Harmon, F.G., Yanovsky, M.J., and Kay, S.A. (2005). Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr. Biol. 15, 47-54.