Arabidopsis Pseudo-Response Regulator7 is a Signaling Intermediate in Phytochrome-Regulated Seedling Deetiolation and Phasing of the Circadian Clock

Plant Cell

Volumn 15, Issue 11, 2003, Pages 2654-2665

  Kaczorowski, Karen A ^a   Quail, Peter H ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ENZYMES; MUTAGENESIS; SEED;

FUSION PROTEINS; MUTANTS; MUTATIONS; WILD-TYPE SEEDLINGS;

PLANTS (BOTANY);

ARABIDOPSIS; EMBRYOPHYTA;

EID: 0345376969     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.015065     Document Type: Article

References (54)

1. Alabadi, D., Oyama, T., Yanovsky, M.J., Harmon, F.G., Mas, P., and Kay, S.A. (2001). Reciprocal regulation between TOC1 and LHY/ CCA1 within the Arabidopsis circadian clock. Science 293, 880-883.
2. Alabadi, D., Yanovsky, M.J., Mas, P., Harmer, S.L., and Kay, S.A. (2002). Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis. Curr. Biol. 12, 757-761.
3. Church, G.M., and Gilbert, W. (1984). Genomic sequencing. Proc. Natl. Acad. Sci. USA 81, 1991-1995.
4. Dowson-Day, M.J., and Millar, A.J. (1999). Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. Plant J. 17, 63-71.
5. Edwards, K., Johnstone, C., and Thompson, C. (1991). A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res. 19, 1349.
6. Eriksson, M.E., and Millar, A.J. (2003). The circadian clock: A plant's best friend in a spinning world. Plant Physiol. 132, 732-738.
7. Harmer, S.L., Hogenesch, J.B., Straume, M., Chang, H.-S., Han, B., Zhu, T., Wang, X., Kreps, J.A., and Kay, S.A. (2000). Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290, 2110-2113.
8. Harmer, S.L., Panda, S., and Kay, S.A. (2001). Molecular bases of circadian rhythms. Annu. Rev. Cell Dev. Biol. 17, 215-253.
9. Hirschfield, M., Tepperman, J.M., Clack, T., Quail, P.H., and Sharrock, R.A. (1998). Coordination of phytochrome levels in phyB mutants of Arabidopsis as revealed by apoprotein-specific monoclonal antibodies. Genetics 149, 523-535.
10. Hoecker, U., Tepperman, J.M., and Quail, P.H. (1999). SPA1, a WD-repeat protein specific to phytochrome A signal transduction. Science 284, 496-499.
11. Hofmann, K., Bucher, P., Falquest, L., and Bairoch, A. (1999). The PROSITE database, its status in 1999. Nucleic Acids Res. 27, 215-219.
12. Hudson, M., Ringli, C., Boylan, M.T., and Quail, P.H. (1999). The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling. Genes Dev. 13, 2017-2027.
13. Hudson, M.E. (2000). The genetics of phytochrome signalling in Arabidopsis. Semin. Cell Dev. Biol. 11, 475-483.
14. Huq, E., Al-Sady, B., and Quail, P.H. (2003). Nuclear translocation of the photoreceptor phytochrome B is necessary for its biological function in seedling photomorphogenesis. Plant J. 35, 660-665.
15. Huq, E., and Quail, P.H. (2002). PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis. EMBO J. 21, 2441-2450.
16. Huq, E., Tepperman, J.M., and Quail, P.H. (2000). GIGANTEA is a nuclear protein involved in phytochrome signaling in Arabidopsis. Proc. Natl. Acad. Sci. USA 97, 9789-9794.
17. Imamura, A., Hanaki, N., Umeda, H., Nakamura, A., Suzuki, T., Ueguchi, C., and Mizuno, T. (1998). Response regulators implicated in His-to-Asp phosphotransfer signaling in Arabidopsis. Proc. Natl. Acad. Sci. USA 95, 2691-2696.
18. Kircher, S., Kozma-Bognar, L., Kim, L., Adam, E., Harter, K., Schafer, E., and Nagy, F. (1999). Light quality-dependent nuclear import of the plant photoreceptors phytochrome A and B. Plant Cell 11, 1445-1456.
19. Makino, S., Kiba, T., Imamura, A., Hanaki, N., Nakamura, A., Suzuki, T., Taniguchi, M., Ueguchi, C., Sugiyama, T., and Mizuno, T. (2000). Genes encoding pseudo-response regulators: Insight into Histo-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana. Plant Cell Physiol. 41, 791-803.
20. Makino, S., Matsushika, A., Kojima, M., Oda, Y., and Mizuno, T. (2001). Light response of the circadian waves of the APRR1/TOC1 quintet: When does the quintet start singing rhythmically in Arabidopsis? Plant Cell Physiol. 42, 334-339.
21. Makino, S., Matsushika, A., Kojima, M., Yamashino, T., and Mizuno, T. (2002). The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana. I. Characterization with APRR1-overexpressing plants. Plant Cell Physiol. 43, 58-69.
22. Martinez-Garcia, J.F., Huq, E., and Quail, P.H. (2000). Direct targeting of light signals to a promoter element-bound transcription factor. Science 288, 859-863.
23. Martinez-Garcia, J.F., Monte, E., and Quail, P.H. (1999). A simple, rapid and quantitative method for preparing Arabidopsis protein extracts for immunoblot analysis. Plant J. 20, 251-257.
24. Mas, P., Alabadi, D., Yanovsky, M., Oyama, T., and Kay, S.A. (2003). Dual role of TOC1 in the control of circadian and photomorphogenic responses in Arabidopsis. Plant Cell 15, 223-236.
25. Matsushika, A., Imamura, A., Yamashino, T., and Mizuno, T. (2002a). Aberrant expression of the light-inducible and circadian-regulated APRR9 gene belonging to the circadian-associated APRR1/TOC1 quintet results in the phenotype of early flowering in Arabidopsis thaliana. Plant Cell Physiol. 43, 833-843.
26. Matsushika, A., Makino, S., Kojima, M., and Mizuno, T. (2000). Circadian waves of expression of the APRR1/TOC1 family of pseudoresponse regulators in Arabidopsis thaliana: Insight into the plant circadian clock. Plant Cell Physiol. 41, 1002-1012.
27. Matsushika, A., Makino, S., Kojima, M., Yamashino, T., and Mizuno, T. (2002b). The APRRI/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana. II. Characterization with CCA1-overexpressing plants. Plant Cell Physiol. 43, 118-122.
28. Millar, A.J., Carre, I.A., Strayer, C.A., Chua, N.-H., and Kay, S.A. (1995). Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science 267, 1161-1163.
29. Mizoguchi, T., Wheatley, K., Hanzawa, Y., Wright, L., Mizoguchi, M., Song, H.-R., Carre, I.A., and Coupland, G. (2002). LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev. Cell 2, 629-641.
30. Mouradov, A., Cremer, F., and Coupland, G. (2002). Control of flowering time: Interacting pathways as a basis for diversity. Plant Cell 14 (suppl.), S111-S130.
31. Neff, M.M., Neff, J.D., Chory, J., and Pepper, A.E. (1998). dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: Experimental applications in Arabidopsis thaliana genetics. Plant J. 14, 387-392.
32. Ni, M., Tepperman, J.M., and Quail, P.H. (1998). PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein. Cell 95, 657-667.
33. Parks, B.M., and Quail, P.H. (1991). Phytochrome-deficient hy1 and hy2 long hypocotyl mutants of Arabidopsis are defective in phytochrome chromophore biosynthesis. Plant Cell 3, 1177-1186.
34. Parks, B.M., and Quail, P.H. (1993). hy8, a new class of Arabidopsis long hypocotyl mutants deficient in functional phytochrome A. Plant Cell 5, 39-48.
35. Quail, P.H. (1998). The phytochrome family: Dissection of functional roles and signalling pathways among family members. Philos. Trans. R. Soc. Lond. B Biol. Sci. 353, 1399-1403.
36. Quail, P.H. (2002). Phytochrome photosensory signaling networks. Nat. Rev. Mol. Cell. Biol. 3, 85-93.
37. Quail, P.H., Briggs, W.R., Chory, J., Hangarter, R.P., Harberd, N.P., Kendrick, R.E., Koornneef, M., Parks, B., and Sharrock, R.A. (1994). Spotlight on phytochrome nomenclature. Plant Cell 6, 468-471.
38. Reed, J.W., Nagatani, A., Elich, T.D., Fagan, M., and Chory, J. (1994). Phytochrome A and phytochrome B have overlapping but distinct functions in Arabidopsis development. Plant Physiol. 104, 1139-1149.
39. Reed, J.W., Nagpal, P., Bastow, R.M., Solomon, K.S., Dowson-Day, M.J., Elumalai, R.P., and Millar, A.J. (2000). Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time. Plant Physiol. 122, 1149-1160.
40. Reed, J.W., Nagpal, P., Poole, D.S., Furuya, M., and Chory, J. (1993). Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell 5, 147-157.
41. Salome, P.A., Michael, T.P., Kearns, E.V., Fett-Neto, A.G., Sharrock, R.A., and McClung, C.R. (2002). The out of phase 1 mutant defines a role for PHYB in circadian phase control in Arabidopsis. Plant Physiol. 129, 1674-1685.
42. Sato, E., Nakamichi, N., Yamashino, T., and Mizuno, T. (2002). Aberrant expression of the Arabidopsis circadian-regulated APRR5 gene belonging to the TOC1/APRR1 quintet results in early flowering and hypersensitiveness to light in early photomorphogenesis. Plant Cell Physiol. 43, 1374-1385.
43. Schaffer, R., Ramsay, N., Samach, A., Corden, S., Putterill, J., Carre, I.A., and Coupland, G. (1998). The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 93, 1219-1229.
44. Smith, H., Xu, Y., and Quail, P.H. (1997). Antagonistic but complementary actions of phytochromes A and B allow optimum seedling de-etiolation. Plant Physiol. 114, 637-641.
45. Somers, D.E., Devlin, P.F., and Kay, S.A. (1998a). Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock. Science 282, 1488-1494.
46. Somers, D.E., Schultz, T.F., Milnamow, M., and Kay, S.A. (2000). ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell 101, 319-329.
47. Somers, D.E., Webb, A.A.R., Pearson, M., and Kay, S.A. (1998b). The short-period mutant, toc1-1, alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana. Development 125, 485-494.
48. Staiger, D., Allenbach, L., Salathia, N., Fiechter, V., Davis, S.J., Millar, A.J., Chory, J., and Fankhauser, C. (2003). The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. Genes Dev. 17, 256-268.
49. Strayer, C., Oyama, T., Schultz, T.F., Raman, R., Somers, D.E., Mas, P., Panda, S., Kreps, J.A., and Kay, S.A. (2000). Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289, 768-771.
50. Tepperman, J.M., Zhu, T., Chang, H.S., Wang, X., and Quail, P.H. (2001). Multiple transcription-factor genes are early targets of phytochrome A signaling. Proc. Natl. Acad. Sci. USA 98, 9437-9442.
51. Valvekens, D., Van Montagu, M., and Van Lijsebettens, M. (1988). Agrobacterium fumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc. Natl. Acad. Sci. USA 85, 5536-5540.
52. Wang, Z.-Y., Kenigsbuch, D., Sun, L., Harel, E., Ong, M.S., and Tobin, E.M. (1997). A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene. Plant Cell 9, 491-507.
53. Wang, Z.-Y., and Tobin, E.M. (1998). Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell 93, 1207-1217.
54. Yanovsky, M.J., and Kay, S.A. (2001). Signaling networks in the plant circadian system. Curr. Opin. Plant Biol. 4, 429-435.