-
1
-
-
0036151669
-
Conducting-state properties of the KcsA potassium channel from molecular and Brownian dynamics simulations
-
S.H. Chung, T.W. Allen, and S. Kuyucak Conducting-state properties of the KcsA potassium channel from molecular and Brownian dynamics simulations Biophys. J. 82 2002 628 645
-
(2002)
Biophys. J.
, vol.82
, pp. 628-645
-
-
Chung, S.H.1
Allen, T.W.2
Kuyucak, S.3
-
2
-
-
0036708445
-
Continuum electrostatics fails to describe ion permeation in the gramicidin channel
-
S. Edwards, B. Corry, S. Kuyucak, and S.H. Chung Continuum electrostatics fails to describe ion permeation in the gramicidin channel Biophys. J. 83 2002 1348 1360
-
(2002)
Biophys. J.
, vol.83
, pp. 1348-1360
-
-
Edwards, S.1
Corry, B.2
Kuyucak, S.3
Chung, S.H.4
-
3
-
-
0038170314
-
Permeation and selectivity in calcium channels
-
W.A. Sather, and E.W. McCleskey Permeation and selectivity in calcium channels Annu. Rev. Physiol. 65 2003 133 159
-
(2003)
Annu. Rev. Physiol.
, vol.65
, pp. 133-159
-
-
Sather, W.A.1
McCleskey, E.W.2
-
4
-
-
0033823118
-
The barium site in a potassium channel by X-ray crystallography
-
Y. Jiang, and R. MacKinnon The barium site in a potassium channel by X-ray crystallography J. Gen. Physiol. 115 2000 269 272
-
(2000)
J. Gen. Physiol.
, vol.115
, pp. 269-272
-
-
Jiang, Y.1
MacKinnon, R.2
-
5
-
-
0028353825
-
Ion permeation, divalent ion block and chemical modification of single sodium channels
-
R.J. French, J.F. Worley III, W.F. Wonderlin, A.S. Kularatna, and B.K. Krueger Ion permeation, divalent ion block and chemical modification of single sodium channels J. Gen. Physiol. 103 1994 447 470
-
(1994)
J. Gen. Physiol.
, vol.103
, pp. 447-470
-
-
French, R.J.1
Worley III, J.F.2
Wonderlin, W.F.3
Kularatna, A.S.4
Krueger, B.K.5
-
6
-
-
0021280815
-
Mechanism of ion permeation through calcium channels
-
P. Hess, and R.W. Tsien Mechanism of ion permeation through calcium channels Nature 309 1984 453 456
-
(1984)
Nature
, vol.309
, pp. 453-456
-
-
Hess, P.1
Tsien, R.W.2
-
7
-
-
0021284546
-
Non-selective conductance in calcium channels of frog muscle: Calcium selectivity in a single file pore
-
W. Almers, and E.W. McCleskey Non-selective conductance in calcium channels of frog muscle: calcium selectivity in a single file pore J. Physiol. 353 1984 585 608
-
(1984)
J. Physiol.
, vol.353
, pp. 585-608
-
-
Almers, W.1
McCleskey, E.W.2
-
9
-
-
0035132981
-
Mechanisms of permeation and selectivity in calcium channels
-
B. Corry, T.W. Allen, S. Kuyucak, and S.H. Chung Mechanisms of permeation and selectivity in calcium channels Biophys. J. 80 2001 195 214
-
(2001)
Biophys. J.
, vol.80
, pp. 195-214
-
-
Corry, B.1
Allen, T.W.2
Kuyucak, S.3
Chung, S.H.4
-
10
-
-
0033799032
-
Binding and selectivity in L-type Ca channels: A mean spherical approximation
-
W. Nonner, L. Catacuzzeno, and B. Eisenberg Binding and selectivity in L-type Ca channels: a mean spherical approximation Biophys. J. 79 2000 1976 1992
-
(2000)
Biophys. J.
, vol.79
, pp. 1976-1992
-
-
Nonner, W.1
Catacuzzeno, L.2
Eisenberg, B.3
-
11
-
-
0034271520
-
Monte Carlo simulations of the mechanism for channel selectivity: The competition between volume exclusion and charge neutrality
-
D. Boda, D. Busath, D. Henderson, and S. Sokolowski Monte Carlo simulations of the mechanism for channel selectivity: the competition between volume exclusion and charge neutrality J. Phys. Chem. 104 2000 8903 8910
-
(2000)
J. Phys. Chem.
, vol.104
, pp. 8903-8910
-
-
Boda, D.1
Busath, D.2
Henderson, D.3
Sokolowski, S.4
-
12
-
-
0037335405
-
Applied-field molecular dynamics study of a model calcium channel selectivity filter
-
Y. Yang, D. Henderson, and D. Busath Applied-field molecular dynamics study of a model calcium channel selectivity filter J. Chem. Phys. 118 2003 4213 4220
-
(2003)
J. Chem. Phys.
, vol.118
, pp. 4213-4220
-
-
Yang, Y.1
Henderson, D.2
Busath, D.3
-
13
-
-
3042689730
-
Applied field nonequilibrium molecular dynamics simulations of ion exit from a β-barrel model of the L-type calcium channel
-
V. Ramakrishnan, D. Henderson, and D.D. Busath Applied field nonequilibrium molecular dynamics simulations of ion exit from a β-barrel model of the L-type calcium channel Biochim. Biophys. Acta 1664 2004 1 8
-
(2004)
Biochim. Biophys. Acta
, vol.1664
, pp. 1-8
-
-
Ramakrishnan, V.1
Henderson, D.2
Busath, D.D.3
-
15
-
-
0034690250
-
Ion permeation mechanism of the potassium channel
-
J. Åqvist, and V. Luzhkov Ion permeation mechanism of the potassium channel Nature 404 2000 881 884
-
(2000)
Nature
, vol.404
, pp. 881-884
-
-
Åqvist, J.1
Luzhkov, V.2
-
16
-
-
0042171841
-
Exploring the origin of the selectivity of the KcsA potassium channel
-
A. Burykin, M. Kato, and A. Warshel Exploring the origin of the selectivity of the KcsA potassium channel Proteins 52 2003 412 416
-
(2003)
Proteins
, vol.52
, pp. 412-416
-
-
Burykin, A.1
Kato, M.2
Warshel, A.3
-
17
-
-
0038009204
-
Potassium channel, ions, and water: Simulation studies based on the high resolution X-ray structure of KcsA
-
C. Domene, and M. Sansom Potassium channel, ions, and water: simulation studies based on the high resolution X-ray structure of KcsA Biophys. J. 85 2003 2787 2800
-
(2003)
Biophys. J.
, vol.85
, pp. 2787-2800
-
-
Domene, C.1
Sansom, M.2
-
18
-
-
0019181224
-
Effects of barium on the potassium conductance of squid axon
-
D.C. Eaton, and M. Brodwick Effects of barium on the potassium conductance of squid axon J. Gen. Physiol. 75 1980 727 750
-
(1980)
J. Gen. Physiol.
, vol.75
, pp. 727-750
-
-
Eaton, D.C.1
Brodwick, M.2
-
19
-
-
0020366556
-
Block of squid axon K channels by internally and externally applied barium ions
-
C.M. Armstrong, R.P. Swenson Jr., and S.R. Taylor Block of squid axon K channels by internally and externally applied barium ions J. Gen. Physiol. 80 1982 663 682
-
(1982)
J. Gen. Physiol.
, vol.80
, pp. 663-682
-
-
Armstrong, C.M.1
Swenson Jr., R.P.2
Taylor, S.R.3
-
20
-
-
0023369648
-
Trapping single ions inside single ion channels
-
C. Miller Trapping single ions inside single ion channels Biophys. J. 52 1987 123 126
-
(1987)
Biophys. J.
, vol.52
, pp. 123-126
-
-
Miller, C.1
-
21
-
-
0023709415
-
Potassium blocks barium permeation through a calcium-activated potassium channel
-
J. Neyton, and C. Miller Potassium blocks barium permeation through a calcium-activated potassium channel J. Gen. Physiol. 92 1998 549 567
-
(1998)
J. Gen. Physiol.
, vol.92
, pp. 549-567
-
-
Neyton, J.1
Miller, C.2
-
26
-
-
0023815525
-
Elementary properties of cardiac calcium channels: A brief review
-
P. Hess Elementary properties of cardiac calcium channels: a brief review Can. J. Physiol. Pharm. 66 1987 1218 1223
-
(1987)
Can. J. Physiol. Pharm.
, vol.66
, pp. 1218-1223
-
-
Hess, P.1
-
28
-
-
0032478818
-
+ conduction and selectivity
-
+ conduction and selectivity Science 280 1998 69 77
-
(1998)
Science
, vol.280
, pp. 69-77
-
-
Doyle, D.A.1
Cabral, J.M.2
Pfuetzner, R.A.3
Kuo, A.4
Gulbis, J.M.5
Cohen, S.L.6
Chait, B.T.7
MacKinnon, R.8
-
31
-
-
0015166645
-
The permeability of the sodium channel to organic cations
-
B. Hille The permeability of the sodium channel to organic cations J. Gen. Physiol. 58 1971 599 619
-
(1971)
J. Gen. Physiol.
, vol.58
, pp. 599-619
-
-
Hille, B.1
-
32
-
-
0027145370
-
A reevaluation of the structure of the pore region of voltage activated cation channels
-
J.A. Schetz, and P.A.V. Anderson A reevaluation of the structure of the pore region of voltage activated cation channels Biol. Bull. 185 1993 462 466
-
(1993)
Biol. Bull.
, vol.185
, pp. 462-466
-
-
Schetz, J.A.1
Anderson, P.A.V.2
-
33
-
-
0029555967
-
Models of ion pores in N-type voltage gated calcium channels
-
S.W. Doughty, F.E. Blaney, and W.G. Richards Models of ion pores in N-type voltage gated calcium channels J. Mol. Graph. 13 1995 342 348
-
(1995)
J. Mol. Graph.
, vol.13
, pp. 342-348
-
-
Doughty, S.W.1
Blaney, F.E.2
Richards, W.G.3
-
36
-
-
0026517122
-
Calcium channel characteristics conferred on the sodium channel by single mutations
-
S.H. Heinemann, H. Terlau, W. Stuhmer, K. Imoto, and S. Numa Calcium channel characteristics conferred on the sodium channel by single mutations Nature 356 1992 441 443
-
(1992)
Nature
, vol.356
, pp. 441-443
-
-
Heinemann, S.H.1
Terlau, H.2
Stuhmer, W.3
Imoto, K.4
Numa, S.5
-
37
-
-
0030472463
-
Pore properties of rat brain. II Sodium channels mutated in the selectivity filter domain
-
T. Schlief, R. Schönherr, K. Imoto, and S.H. Heinemann Pore properties of rat brain. II Sodium channels mutated in the selectivity filter domain Eur. Biophys. J. 25 1996 75 91
-
(1996)
Eur. Biophys. J.
, vol.25
, pp. 75-91
-
-
Schlief, T.1
Schönherr, R.2
Imoto, K.3
Heinemann, S.H.4
-
39
-
-
0033694833
-
From ionic currents to molecular mechanisms: The structure and function of voltage-gated sodium channels
-
W.A. Catterall From ionic currents to molecular mechanisms: the structure and function of voltage-gated sodium channels Neuron 26 2000 13 25
-
(2000)
Neuron
, vol.26
, pp. 13-25
-
-
Catterall, W.A.1
-
42
-
-
0026332801
-
Effects of external protons on single cardiac sodium channels from guinea pig ventricular myocytes
-
J.F. Zhang, and S.A. Siegelbaum Effects of external protons on single cardiac sodium channels from guinea pig ventricular myocytes J. Gen. Physiol. 98 1991 1065 1083
-
(1991)
J. Gen. Physiol.
, vol.98
, pp. 1065-1083
-
-
Zhang, J.F.1
Siegelbaum, S.A.2
-
44
-
-
0028077663
-
Two identical noninteracting sites for an ion channel revealed by proton transfer
-
M.J. Root, and R. MacKinnon Two identical noninteracting sites for an ion channel revealed by proton transfer Science 265 1994 1852 1856
-
(1994)
Science
, vol.265
, pp. 1852-1856
-
-
Root, M.J.1
MacKinnon, R.2
-
46
-
-
0031045617
-
Charged amino acids near the pore entrance influence ion-conduction of a human L-type cardiac calcium channel
-
A. Bahinski, A. Yatani, G. Mikala, S. Tang, S. Yamamoto, and A. Schwartz Charged amino acids near the pore entrance influence ion-conduction of a human L-type cardiac calcium channel Mol. Cell. Biochem. 166 1997 125 134
-
(1997)
Mol. Cell. Biochem.
, vol.166
, pp. 125-134
-
-
Bahinski, A.1
Yatani, A.2
Mikala, G.3
Tang, S.4
Yamamoto, S.5
Schwartz, A.6
-
47
-
-
0029862941
-
Energy barrier presented to ions by the vestibule of the biological membrane channel
-
M. Hoyles, S. Kuyucak, and S.H. Chung Energy barrier presented to ions by the vestibule of the biological membrane channel Biophys. J. 70 1996 1628 1642
-
(1996)
Biophys. J.
, vol.70
, pp. 1628-1642
-
-
Hoyles, M.1
Kuyucak, S.2
Chung, S.H.3
-
48
-
-
0001426939
-
The potassium channel: Structure, selectivity and diffusion
-
T.W. Allen, A. Bliznyuk, A.P. Rendell, S. Kuyucak, and S.H. Chung The potassium channel: structure, selectivity and diffusion J. Chem. Phys. 112 2000 8191 8204
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 8191-8204
-
-
Allen, T.W.1
Bliznyuk, A.2
Rendell, A.P.3
Kuyucak, S.4
Chung, S.H.5
-
49
-
-
0032708637
-
Permeation of ions across the potassium channel: Brownian dynamics studies
-
S.H. Chung, T.W. Allen, M. Hoyles, and S. Kuyucak Permeation of ions across the potassium channel: Brownian dynamics studies Biophys. J. 77 1999 2517 2533
-
(1999)
Biophys. J.
, vol.77
, pp. 2517-2533
-
-
Chung, S.H.1
Allen, T.W.2
Hoyles, M.3
Kuyucak, S.4
-
52
-
-
0002786541
-
Brownian dynamics study of ion transport in the vestibule of membrane channels
-
S.C. Li, M. Hoyles, S. Kuyucak, and S.H. Chung Brownian dynamics study of ion transport in the vestibule of membrane channels Biophys. J. 74 1998 37 47
-
(1998)
Biophys. J.
, vol.74
, pp. 37-47
-
-
Li, S.C.1
Hoyles, M.2
Kuyucak, S.3
Chung, S.H.4
-
53
-
-
0033931747
-
Molecular dynamics estimates of ion diffusion in model hydrophobic and the KcsA potassium channels
-
T.W. Allen, S. Kuyucak, and S.H. Chung Molecular dynamics estimates of ion diffusion in model hydrophobic and the KcsA potassium channels Biophys. Chem. 86 2000 1 14
-
(2000)
Biophys. Chem.
, vol.86
, pp. 1-14
-
-
Allen, T.W.1
Kuyucak, S.2
Chung, S.H.3
-
54
-
-
0031870447
-
Study of ionic currents across a model membrane channel using Brownian dynamics
-
S.H. Chung, M. Hoyles, T.W. Allen, and S. Kuyucak Study of ionic currents across a model membrane channel using Brownian dynamics Biophys. J. 75 1998 793 809
-
(1998)
Biophys. J.
, vol.75
, pp. 793-809
-
-
Chung, S.H.1
Hoyles, M.2
Allen, T.W.3
Kuyucak, S.4
-
55
-
-
0036213027
-
Reservoir boundaries in Brownian dynamics simulations of ion channels
-
B. Corry, M. Hoyles, T.W. Allen, M. Walker, S. Kuyucak, and S.H. Chung Reservoir boundaries in Brownian dynamics simulations of ion channels Biophys. J. 82 2002 1975 1982
-
(2002)
Biophys. J.
, vol.82
, pp. 1975-1982
-
-
Corry, B.1
Hoyles, M.2
Allen, T.W.3
Walker, M.4
Kuyucak, S.5
Chung, S.H.6
-
57
-
-
0032725268
-
Exploring the open pore of the potassium channel from Streptomyces lividans
-
D. Meuser, H. Splitt, R. Wagner, and H. Schrempf Exploring the open pore of the potassium channel from Streptomyces lividans FEBS Lett. 462 1999 447 452
-
(1999)
FEBS Lett.
, vol.462
, pp. 447-452
-
-
Meuser, D.1
Splitt, H.2
Wagner, R.3
Schrempf, H.4
-
58
-
-
0025924129
-
+ channels prolonged by batrachotoxin. Current-voltage behavior and single-channel kinetics
-
+ channels prolonged by batrachotoxin. Current-voltage behavior and single-channel kinetics J. Gen. Physiol. 97 1991 117 142
-
(1991)
J. Gen. Physiol.
, vol.97
, pp. 117-142
-
-
Schild, L.1
Ravindran, A.2
Moczydlowski, E.3
-
59
-
-
0022531495
-
Calcium channel selectivity for divalent and monovalent cations: Voltage and concentration dependence of single channel current in ventricular heart cells
-
P. Hess, J.B. Lansman, and R.W. Tsien Calcium channel selectivity for divalent and monovalent cations: voltage and concentration dependence of single channel current in ventricular heart cells J. Gen. Physiol. 88 1986 293 319
-
(1986)
J. Gen. Physiol.
, vol.88
, pp. 293-319
-
-
Hess, P.1
Lansman, J.B.2
Tsien, R.W.3
-
60
-
-
0026323785
-
Characterization and localization of two ion-binding sites within the pore of cardiac L-type calcium channels
-
R.L. Rosenberg, and X.H. Chen Characterization and localization of two ion-binding sites within the pore of cardiac L-type calcium channels J. Gen. Physiol. 97 1991 1207 1225
-
(1991)
J. Gen. Physiol.
, vol.97
, pp. 1207-1225
-
-
Rosenberg, R.L.1
Chen, X.H.2
-
61
-
-
0022388882
-
A novel type of cardiac calcium channel in ventricular cells
-
B. Nilius, P. Hess, J.B. Lansman, and R.W. Tsien A novel type of cardiac calcium channel in ventricular cells Nature 316 1985 443 446
-
(1985)
Nature
, vol.316
, pp. 443-446
-
-
Nilius, B.1
Hess, P.2
Lansman, J.B.3
Tsien, R.W.4
-
63
-
-
0021284545
-
A non-selective cation conductance in frog muscle membrane blocked by micromolar external calcium ions
-
W. Almers, E.W. McCleskey, and P.T. Palade A non-selective cation conductance in frog muscle membrane blocked by micromolar external calcium ions J. Physiol. 353 1984 565 583
-
(1984)
J. Physiol.
, vol.353
, pp. 565-583
-
-
Almers, W.1
McCleskey, E.W.2
Palade, P.T.3
-
64
-
-
0030958262
-
Block of N-type calcium channels in chick sensory neurons by external sodium
-
L. Polo-Parada, and S.J. Korn Block of N-type calcium channels in chick sensory neurons by external sodium J. Gen. Physiol. 109 1997 693 702
-
(1997)
J. Gen. Physiol.
, vol.109
, pp. 693-702
-
-
Polo-Parada, L.1
Korn, S.J.2
-
65
-
-
0036399649
-
Monte Carlo simulations of ion selectivity in a biological Na channel: Charge-space competition
-
D. Boda, D. Busath, B. Eisenberg, D. Henderson, and W. Nonner Monte Carlo simulations of ion selectivity in a biological Na channel: charge-space competition Phys. Chem. Chem. Phys. 4 2002 5154 5160
-
(2002)
Phys. Chem. Chem. Phys.
, vol.4
, pp. 5154-5160
-
-
Boda, D.1
Busath, D.2
Eisenberg, B.3
Henderson, D.4
Nonner, W.5
-
66
-
-
0028347112
-
2+-occupied conductance states of cardiac sodium channels modified by batrachotoxin: Exploring ion-ion interactions in a multi-ion channel
-
2+-occupied conductance states of cardiac sodium channels modified by batrachotoxin: exploring ion-ion interactions in a multi-ion channel Biophys. J. 66 1994 654 666
-
(1994)
Biophys. J.
, vol.66
, pp. 654-666
-
-
Schild, L.1
Moczydlowski, E.2
-
67
-
-
36449000305
-
- ion pairs in water: Mean force potentials by constrained molecular dynamics
-
- ion pairs in water: mean force potentials by constrained molecular dynamics J. Chem. Phys. 95 1991 2823 2831
-
(1991)
J. Chem. Phys.
, vol.95
, pp. 2823-2831
-
-
Guárdia, E.1
Rey, R.2
Padró, J.A.3
-
68
-
-
26644438864
-
Potential of mean force by constrained molecular dynamics: A sodium chloride ion-pair in water
-
E. Guárdia, R. Rey, and J.A. Padró Potential of mean force by constrained molecular dynamics: a sodium chloride ion-pair in water J. Chem. Phys. 155 1991 187 195
-
(1991)
J. Chem. Phys.
, vol.155
, pp. 187-195
-
-
Guárdia, E.1
Rey, R.2
Padró, J.A.3
-
69
-
-
0032158469
-
Computer simulation of ion conductance in membrane channels
-
M. Hoyles, S. Kuyucak, and S.H. Chung Computer simulation of ion conductance in membrane channels Phys. Rev. E 58 1998 3654 3661
-
(1998)
Phys. Rev. e
, vol.58
, pp. 3654-3661
-
-
Hoyles, M.1
Kuyucak, S.2
Chung, S.H.3
|