Control of nonsegmented negative-strand RNA virus replication by siRNA

Virus Research

Volumn 102, Issue 1, 2004, Pages 27-35

  Barik, Sailen ^a  

^a UNIVERSITY OF SOUTH ALABAMA   (United States)

Author keywords

Host virus interaction; Parainfluenza virus; Respiratory syncytial virus; RNA interference; siRNA; Vesicular stomatitis virus

Indexed keywords

ANTIVIRUS AGENT; AROMATIC COMPOUND; DOUBLE STRANDED RNA; GLYCINE CLEAVAGE SYSTEM; GUANINE NUCLEOTIDE BINDING PROTEIN; HN PROTEIN; M PROTEIN; NUCLEOCAPSID PROTEIN; PHOSPHOPROTEIN; PROFILIN; RFI 641; RIBONUCLEASE; SMALL INTERFERING RNA; THROMBOSPONDIN; VIRUS FUSION PROTEIN; VIRUS PROTEIN; ZYXIN;

APOPTOSIS; CELL VIABILITY; ENZYME ACTIVITY; GENE CONTROL; GENE EXPRESSION; GENE SILENCING; GENE TARGETING; GENETIC ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PARAINFLUENZA VIRUS; PARAMYXOVIRUS; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN SYNTHESIS; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; REVIEW; RNA INTERFERENCE; RNA SYNTHESIS; SIGNAL TRANSDUCTION; VESICULAR STOMATITIS VIRUS; VIROGENESIS; VIRUS ADSORPTION; VIRUS CELL INTERACTION; VIRUS ENVELOPE; VIRUS GENE; VIRUS GENOME; VIRUS INFECTION; VIRUS NUCLEOCAPSID; VIRUS REPLICATION; VIRUS RESISTANCE; VIRUS TRANSCRIPTION;

PARAMYXOVIRIDAE; PNEUMOVIRUS; RESPIRATORY SYNCYTIAL VIRUS; RHABDOVIRIDAE; RNA VIRUSES; VESICULAR STOMATITIS VIRUS;

EID: 1842531651     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2004.01.012     Document Type: Article

References (60)

1. Ahlquist P. RNA-dependent RNA polymerases, viruses, and RNA silencing. Science. 296:2002;1270-1273.
2. Aszódi A., Pfeifer A., Ahmad M., Glauner M., Zhou X.H., Ny L., Andersson K.E., Kehrel B., Offermanns S., Fässler R. The vasodilator-stimulated phosphoprotein (VASP) is involved in cGMP- and cAMP-mediated inhibition of agonist-induced platelet aggregation, but is dispensable for smooth muscle function. EMBO J. 18:1999;37-48.
3. Banerjee A.K., Barik S. Gene expression of vesicular stomatitis virus genome RNA. Virology. 188:1992;417-428.
4. Banerjee A.K., Barik S., De B.P. Gene expression of nonsegmented negative-strand RNA viruses. Pharmacol. Ther. 51:1991;47-70.
5. Barik S. Transcription of human respiratory syncytial virus genome RNA in vitro: requirement of cellular factor(s). J. Virol. 66:1992;6813-6818.
6. Barik S. The structure of the 5′ terminal cap of the respiratory syncytial virus mRNA. J. Gen. Virol. 74:1993;485-490.
7. Barik S., McLean T., Dupuy L.C. Phosphorylation of Ser232 directly regulates the transcriptional activity of the P protein of human respiratory syncytial virus: phosphorylation of Ser237 may play an accessory role. Virology. 213:1995;405-412.
8. Barik S., Rud E.W., Luk D., Banerjee A.K., Kang C.Y. Nucleotide sequence analysis of the L gene of vesicular stomatitis virus (New Jersey serotype): identification of conserved domains in L proteins of nonsegmented negative-strand RNA viruses. Virology. 175:1990;332-337.
9. Barr J.N., Whelan S.P., Wertz G.W. Transcriptional control of the RNA-dependent RNA polymerase of vesicular stomatitis virus. Biochim. Biophys. Acta. 1577:2002;337-353.
10. Bisaillon M., Lemay G. Viral and cellular enzymes involved in synthesis of mRNA cap structure. Virology. 236:1997;1-7.
11. Bitko V., Barik S. Persistent activation of RelA by respiratory syncytial virus involves protein kinase C, underphosphorylated IkappaBbeta, and sequestration of protein phosphatase 2A by the viral phosphoprotein. J. Virol. 72:1998;5610-5618.
12. Bitko V., Barik S. An endoplasmic reticulum-specific stress-activated caspase (caspase-12) is implicated in the apoptosis of A549 epithelial cells by respiratory syncytial virus. J. Cell. Biochem. 80:2001a;441-454.
13. Bitko V., Barik S. Phenotypic silencing of cytoplasmic genes using sequence-specific double-stranded short interfering RNA and its application in the reverse genetics of wild type negative-strand RNA viruses. BMC Microbiol. 1:2001b;34.
14. Bitko V., Oldenburg A., Garmon N.E., Barik S. Profilin is required for viral morphogenesis, syncytium formation, and cell-specific stress fiber induction by respiratory syncytial virus. BMC Microbiol. 3:2003;9.
15. Bukreyev A., Whitehead S.S., Murphy B.R., Collins P.L. Recombinant respiratory syncytial virus from which the entire SH gene has been deleted grows efficiently in cell culture and exhibits site-specific attenuation in the respiratory tract of the mouse. J. Virol. 71:1997;8973-8982.
16. Burke E., Dupuy L., Wall C., Barik S. Role of cellular actin in the gene expression and morphogenesis of human respiratory syncytial virus. Virology. 252:1998;137-148.
17. Burke E., Mahoney N.M., Almo S.C., Barik S. Profilin is required for optimal actin-dependent transcription of respiratory syncytial virus genome RNA. J. Virol. 74:2000;669-675.
18. Carmichael G.G. Medicine: silencing viruses with RNA. Nature. 418:2002;379-380.
19. Chi J.T., Chang H.Y., Wang N.N., Chang D.S., Dunphy N., Brown P.O. Genomewide view of gene silencing by small interfering RNAs. Proc. Natl. Acad. Sci. U.S.A. 100:2003;6343-6346.
20. Cogoni C., Macino G. Post-transcriptional gene silencing across kingdoms. Curr. Opin. Genet. Dev. 10:2000;638-643.
21. Cristina J., Yunus A.S., Rockemann D.D., Samal S.K. Bovine respiratory syncytial virus can induce apoptosis in MDBK cultured cells. Vet. Microbiol. 83:2001;317-320.
22. Crowe J.E. Jr., Bui P.T., London W.T., Davis A.R., Hung P.P., Chanock R.M., Murphy B.R. Satisfactorily attenuated and protective mutants derived from a partially attenuated cold-passaged respiratory syncytial virus mutant by introduction of additional attenuating mutations during chemical mutagenesis. Vaccine. 12:1994;691-699.
23. Crowe J.E. Jr., Williams J.V. Immunology of viral respiratory tract infection in infancy. Paediatr. Respir. Rev. 4:2003;112-119.
24. Delarue M., Poch O., Tordo N., Moras D., Argos P. An attempt to unify the structure of polymerases. Protein Eng. 3:1990;461-467.
25. de Magalhaes J.C., Andrade A.A., Silva P.N., Sousa L.P., Ropert C., Ferreira P.C., Kroon E.G., Gazzinelli R.T., Bonjardim C.A. A mitogenic signal triggered at an early stage of vaccinia virus infection: implication of MEK/ERK and protein kinase A in virus multiplication. J. Biol. Chem. 276:2001;38353-38360.
26. Domingo E., Holland J.J. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51:1997;151-178.
27. Dutch R.E., Jardetzky T.S., Lamb R.A. Virus membrane fusion proteins: biological machines that undergo a metamorphosis. Biosci. Rep. 20:2000;597-612.
28. Elbashir S.M., Harborth J., Lendeckel W., Yalcin A., Weber K., Tuschl T. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature. 411:2001;494-498.
29. Esolen L.M., Park S.W., Hardwick J.M., Griffin D.E. Apoptosis as a cause of death in measles virus-infected cells. J. Virol. 69:1995;3955-3958.
30. Hamada M., Ohtsuka T., Kawaida R., Koizumi M., Morita K., Furukawa H., Imanishi T., Miyagishi M., Taira K. Effects on RNA interference in gene expression (RNAi) in cultured mammalian cells of mismatches and the introduction of chemical modifications at the 3′-ends of siRNAs. Antisense Nucleic Acid Drug Dev. 12:2002;301-309.
31. Hannon G.J. RNA interference. Nature. 418:2002;244-251.
32. Harborth J., Elbashir S.M., Bechert K., Tuschl T., Weber K. Identification of essential genes in cultured mammalian cells using small interfering RNAs. J. Cell. Sci. 114:2001;4557-4565.
33. Helin E., Vainionpaa R., Hyypia T., Julkunen I., Matikainen S. Measles virus activates NF-kappa B and STAT transcription factors and production of IFN-alpha/beta and IL-6 in the human lung epithelial cell line A549. Virology. 290:2001;1-10.
34. Heminway B.R., Yu Y., Galinski M.S. Paramyxovirus mediated cell fusion requires co-expression of both the fusion and hemagglutinin-neuraminidase glycoproteins. Virus Res. 31:1994a;1-16.
35. Heminway B.R., Yu Y., Tanaka Y., Perrine K.G., Gustafson E., Bernstein J.M., Galinski M.S. Analysis of respiratory syncytial virus F, G, and SH proteins in cell fusion. Virology. 200:1994b;801-805.
36. Hoffman L.M., Nix D.A., Benson B., Boot-Hanford R., Gustafsson E., Jamora C., Menzies A.S., Goh K.L., Jensen C.C., Gertler F.B., Fuchs E., Fassler R., Beckerle M.C. Targeted disruption of the murine zyxin gene. Mol. Cell. Biol. 23:2003;70-79.
37. Holen T., Amarzguioui M., Wiiger M.T., Babaie E., Prydz H. Positional effects of short interfering RNAs targeting the human coagulation trigger Tissue Factor. Nucleic Acids Res. 30:2002;1757-1766.
38. Huntley C.C., Weiss W.J., Gazumyan A., Buklan A., Feld B., Hu W., Jones T.R., Murphy T., Nikitenko A.A., O'Hara B., Prince G., Quartuccio S., Raifeld Y.E., Wyde P., O'Connell J.F. RFI-641, a potent respiratory syncytial virus inhibitor. Antimicrob. Agents Chemother. 46:2002;841-847.
39. Jackson A.L., Bartz S.R., Schelter J., Kobayashi S.V., Burchard J., Mao M., Li B., Cavet G., Linsley P.S. Expression profiling reveals off-target gene regulation by RNAi. Nat. Biotechnol. 21:2003;635-637.
40. Jayakar H.R., Whitt M.A. Identification of two additional translation products from the matrix (M) gene that contribute to vesicular stomatitis virus cytopathology. J. Virol. 76:2002;8011-8018.
41. Kamath, R.S., Martinez-Campos, M., Zipperlen, P., Fraser, A.G., Ahringer, J., 2001. Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans. Genome Biol. 2, RESEARCH0002.
42. Kawasaki H., Taira K. Short hairpin type of dsRNAs that are controlled by tRNA(Val) promoter significantly induce RNAi-mediated gene silencing in the cytoplasm of human cells. Nucleic Acids Res. 31:2003;700-707.
43. Kopecky S.A., Lyles D.S. The cell-rounding activity of the vesicular stomatitis virus matrix protein is due to the induction of cell death. J. Virol. 77:2003;5524-5528.
44. Lawson N., Stillman E., Whitt M., Rose J. Recombinant vesicular stomatitis viruses from DNA. Proc. Natl. Acad. Sci. U.S.A. 92:1995;4477-4481.
45. Marriott A.C., Easton A.J. Reverse genetics of the Paramyxoviridae. Adv. Virus Res. 53:1999;321-340.
46. Martinez J., Patkaniowska A., Urlaub H., Luhrmann R., Tuschl T. Single-stranded antisense siRNAs guide target RNA cleavage in RNAi. Cell. 110:2002;563-574.
47. Monick M., Staber J., Thomas K., Hunninghake G. Respiratory syncytial virus infection results in activation of multiple protein kinase C isoforms leading to activation of mitogen-activated protein kinase. J. Immunol. 166:2001;2681-2687.
48. Moyer S.A., Baker S.C., Lessard J.L. Tubulin: a factor necessary for the synthesis of both Sendai virus and vesicular stomatitis virus RNAs. Proc. Natl. Acad. Sci. U.S.A. 83:1986;5405-5409.
49. O'Donnell D.R., Milligan L., Stark J.M. Induction of CD95 (Fas) and apoptosis in respiratory epithelial cell cultures following respiratory syncytial virus infection. Virology. 257:1999;198-207.
50. O'Reilly E.K., Kao C.C. Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure. Virology. 252:1998;287-303.
51. Palese P., Zheng H., Engelhardt O.G., Pleschka S., Garcia-Sastre A. Negative-strand RNA viruses: genetic engineering and applications. Proc. Natl. Acad. Sci. U.S.A. 93:1996;11354-11358.
52. Pazdrak K., Olszewska-Pazdrak B., Liu T., Takizawa R., Brasier A.R., Garofalo R.P., Casola A. MAPK activation is involved in posttranscriptional regulation of RSV-induced RANTES gene expression. Am. J. Physiol. Lung Cell Mol. Physiol. 283:2002;L364-L372.
53. Pekosz A., He B., Lamb R.A. Reverse genetics of negative-strand RNA viruses: closing the circle. Proc. Natl. Acad. Sci. U.S.A. 96:1999;8804-8806.
54. Pickford A.S., Cogoni C. RNA-mediated gene silencing. Cell. Mol. Life Sci. 60:2003;871-882.
55. Porotto M., Murrell M., Greengard O., Moscona A. Triggering of human parainfluenza virus 3 fusion protein (F) by the hemagglutinin-neuraminidase (HN) protein: an HN mutation diminishes the rate of F activation and fusion. J. Virol. 77:2003;3647-3654.
56. Semizarov D., Frost L., Sarthy A., Kroeger P., Halbert D.N., Fesik S.W. Specificity of short interfering RNA determined through gene expression signatures. Proc. Natl. Acad. Sci. U.S.A. 100:2003;6347-6352.
57. Tian B., Zhang Y., Luxon B.A., Garofalo R.P., Casola A., Sinha M., Brasier A.R. Identification of NF-kappaB-dependent gene networks in respiratory syncytial virus-infected cells. J. Virol. 76:2002;6800-6814.
58. Tijsterman M., Ketting R.F., Okihara K.L., Sijen T., Plasterk R.H. RNA helicase MUT-14-dependent gene silencing triggered in C. elegans by short antisense RNAs. Science. 295:2002;694-697.
59. Whelan S.P., Ball L.A., Barr J.N., Wertz G.T. Efficient recovery of infectious vesicular stomatitis virus entirely from cDNA clones. Proc. Natl. Acad. Sci. U.S.A. 92:1995;8388-8392.
60. Yu J.Y., DeRuiter S.L., Turner D.L. RNA interference by expression of short-interfering RNAs and hairpin RNAs in mammalian cells. Proc. Natl. Acad. Sci. U.S.A. 99:2002;6047-6052.