Mechanical stretching of proteins: Calmodulin and titin

Physica A: Statistical Mechanics and its Applications

Volumn 352, Issue 1, 2005, Pages 28-42

  Cieplak, Marek ^a  

^a INSTITUTE OF PHYSICS   (Poland)

Author keywords

Calmodulin; Go model; Molecular dynamics; Protein stretching

Indexed keywords

AMINO ACIDS; ATOMIC FORCE MICROSCOPY; DNA; MOLECULAR DYNAMICS; MUSCLE; SEPARATION;

CALMODULIN; GO MODEL; PROTEIN STRETCHING; TITIN;

PROTEINS;

EID: 17844386046     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2004.12.032     Document Type: Article

References (40)

1. E.L. Florin, V.T. Moy, and H.E. Gaub Science 264 1994 415 417
2. H. Grubmuller, B. Heymann, and P. Tavan Science 271 1996 997 999
3. S.B. Smith, Y. Cui, and C. Bustamante Science 271 1996 795 799
4. A. Cluzel, A. Lebrun, C. Heller, R. Lavery, J.L. Viovy, D. Chatenay, and F. Caron Science 271 1996 792 794
5. U. Bockelmann, B. Essevaz-Roulet, and F. Heslot Phys. Rev. Lett. 79 1997 4489 4492
6. M. Rief, M. Gautel, F. Oesterhelt, J.M. Fernandez, and H.E. Gaub Science 276 1997 1109 1112
7. L. Tskhovrebova, K. Trinick, J.A. Sleep, and M. Simmons Nature 387 1997 308 312
8. M.S.Z. Kellermayer, S.B. Smith, H.L. Granzier, and C. Bustamante Science 276 1997 1112 1116
9. S.B. Fowler, R.B. Best, J.L. Toca Herrera, T.J. Rutherford, A. Steward, E. Paci, M. Karplus, and J. Clarke J. Mol. Biol. 322 2002 841 849
10. P.E. Marszalek, H. Lu, H.B. Li, M. Carrion-Vazquez, A.F. Oberhauser, K. Schulten, and J.M. Fernandez Nature 402 1999 100 103
11. M. Carrion-Vasquez, A.F. Oberhauser, S.B. Fowler, P.E. Marszalek, S.E. Broedel, J. Clarke, and J.M. Fernandez Proc. Natl. Acad. Sci. USA 96 1999 3694 3699
12. Z.B. Guan, J.T. Roland, J.Z. Bai, S.X. Ma, T.M. McIntire, and M. Nguyen J. Am. Chem. Soc. 126 2004 2058 2065
13. M. Carrion-Vazquez, A.F. Oberhauser, T.E. Fisher, P.E. Marszalek, H. LI, and J.M. Fernandez Prog. Biophys. Mol. Biol. 74 2000 63 91
14. M. Carrion-Vazquez, H. Li, H. Lu, P.E. Marszalek, A.F. Oberhauser, and J.M. Fernandez Nat. Struct. Biol. 10 2003 738 743
15. G. Yang, C. Cecconi, W.A. Baase, I.R. Vetter, W.A. Breyer, J.A. Haack, B.W. Matthews, F.W. Dahlquist, and C. Bustamante Proc. Nat. Acad. Sci. 97 2000 139 144
16. M. Cieplak, T.X. Hoang, and M.O. Robbins Phys. Rev. E 69 2004 011912
17. H. Janovjak, M. Kessler, D. Oesterhelt, H. Gaub, and D.J. Mueller EMBO J. 22 2003 5220 5229
18. M. Cieplak, T.X. Hoang, and M.O. Robbins Thermal effects in stretching of Go-like models of titin and secondary structures Proteins Struct. Funct. Bio. 56 2004 285 297
19. F.C. Bernstein, T.F. Koetzle, G.J.B. Williams, E.F. Meyer Jr., M.D. Brice, J.R. Rodgers, O. Kennard, T. Shimanouchi, and M. Tasumi J. Mol. Biol. 112 1977 535 542
20. S. Improta, A.S. Politou, and A. Pastore Immunoglobulin-like modules from titin I-band extensible components of muscle elasticity Structure 15 1996 323 327
21. H. Lu, and K. Schulten Steered molecular dynamics simulation of conformational changes of immunoglobulin domain I27 interprete atomic force microscopy observations Chem. Phys. 247 1999 141 153
22. C. Micheletti, J.R. Banavar, A. Maritan, and F. Seno Phys. Rev. Lett. 82 1999 3372 3375
23. A. Maritan, C. Micheletti, A. Trovato, and J.R. Banavar Nature 406 2000 287
24. J.R. Banavar, and A. Maritan Rev. Mod. Phys. 75 2003 23 34
25. R. Du, V.S. Pande, A.Y. Grosberg, T. Tanaka, and E.I. Shakhnovich J. Chem. Phys. 111 1999 10375 10380
26. R. Unger, and J. Moult J. Mol. Biol. 259 1996 988 994
27. K.W. Plaxco, K.T. Simons, and D. Baker J. Mol. Biol. 277 1998 985 994
28. K.W. Plaxco, K.T. Simons, I. Ruczinski, and D. Baker Biochemistry 39 2000 11177 11183
29. H. Abe, and N. Go Biopolymers 20 1981 1013 1031
30. S. Takada Proc. Natl. Acad. Sci. USA 96 1999 11698 11700
31. T.X. Hoang, and M. Cieplak J. Chem. Phys. 112 2000 6851 6862
32. T.X. Hoang, and M. Cieplak J. Chem. Phys. 113 2001 8319 8328
33. M. Cieplak, and T.X. Hoang Biophys. J. 84 2003 475 488
34. J. Tsai, R. Taylor, C. Chothia, and M. Gerstein J. Mol. Biol. 290 1999 253 266
35. G. Settanni, T.X. Hoang, C. Micheletti, and A. Maritan Biophys. J. 83 2002 3533 3541
36. T. Veitshans, D. Klimov, and D. Thirumalai Folding Des. 2 1997 1 22
37. M. Cieplak, T.X. Hoang, and M.O. Robbins Proteins Funct. Struct. Genet. 49 2002 114 124
38. M. Cieplak, T.X. Hoang, and M.O. Robbins Phys. Rev. E 70 2004 011917
39. M. Cieplak, A. Pastore, T.X. Hoang, J. Chem. Phys., in press.
40. M. Cieplak, T.X. Hoang, and M.O. Robbins Proteins Funct. Struct. Genet. 49 2002 104 113