Polytrodes: High-density silicon electrode arrays for large-scale multiunit recording

Journal of Neurophysiology

Volumn 93, Issue 5, 2005, Pages 2987-3000

  Blanche, Timothy J ^a   Spacek, Martin A ^a   Hetke, Jamille F ^b   Swindale, Nicholas V ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b University of Michigan   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SILICON;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; AUTOMATION; BRAIN NERVE CELL; CAT; CELL ISOLATION; CONTROLLED STUDY; ELECTRODE; IMPEDANCE; IN VIVO STUDY; INFORMATION PROCESSING; NEUROPHYSIOLOGY; NONHUMAN; POLYTRODE; PRIORITY JOURNAL; RAT; RECEPTIVE FIELD; RECORDING; RELIABILITY; TISSUE INJURY; VISUAL CORTEX;

ACTION POTENTIALS; ANIMALS; BRAIN MAPPING; CARBOCYANINES; CATS; COMPUTER SIMULATION; DENSITOMETRY; ELECTRIC CONDUCTIVITY; ELECTRIC IMPEDANCE; ELECTRIC STIMULATION; ELECTRODES, IMPLANTED; ELECTROPHYSIOLOGY; EVOKED POTENTIALS; MICROELECTRODES; NEURONS; ONLINE SYSTEMS; RATS; RESEARCH DESIGN; SILICON; TIME; VISUAL CORTEX;

EID: 17644389537     PISSN: 00223077     EISSN: None     Source Type: Journal    
DOI: 10.1152/jn.01023.2004     Document Type: Article

References (78)

1. Alonso JM and Martinez LM. Functional connectivity between simple cells and complex cells in cat striate cortex. Nat Neurosci 1: 395-403, 1998.
2. Anderson DJ, Najafi K, Tanghe SJ, Evans DA, Levy KL, Hetke JF, Xue XL, Zappia JJ, and Wise KD. Batch-fabricated thin-film electrodes for stimulation of the central auditory system. IEEE Trans Biomed Eng 36: 693-704, 1989.
3. Bai Q and Wise KD. Single-unit neural recording with active microelectrode arrays. IEEE Trans Biomed Eng 48: 911-920, 2001.
4. Bartho P, Hirase H, Monconduit L, Zugaro M, Harris KD, and Buzsaki G. Characterization of neocortical principal cells and interneurons by network interactions and extracellular features. J Neurophysiol 92: 600-608, 2004.
5. Bierer JA and Middlebrooks JC. Auditory cortical images of cochlear-implant stimuli: dependence on electrode configuration. J Neurophysiol 87: 478-492, 2002.
6. Bishop PO, Burke W, and Davis R. The identification of single units in central visual pathways. J Physiol 162: 409-431, 1962a.
7. Bishop PO, Burke W, and Davis R. The interpretation of the extracellular response of single lateral geniculate cells. J Physiol 162: 451-472, 1962b.
8. Blanche TJ, Hetherington PA, Rennie CJ, Spacek MA, and Swindale NV. Model-based 3D cortical neuron localization and classification with silicon electrode arrays. Soc Neurosci Abstr 429.19, 2003.
9. Buchwald JS, Holstein SB, and Weber DS. Multiple unit recording: technique, interpretation, and experimental applications. In: Bioelectric Recording Techniques, edited by Thompson RF and Patterson MM. New York: Academic, 1973, p. 201-242.
10. Buzsaki G. Large-scale recording of neuronal ensembles. Nat Neurosci 7: 446-451, 2004.
11. Buzsaki G, Horvath Z, Urioste R, Hetke J, and Wise K. High-frequency network oscillation in the hippocampus. Science 256: 1025-1027, 1992.
12. Buzsaki G and Kandel A. Somadendritic backpropagation of action potentials in cortical pyramidal cells of the awake rat. J Neurophysiol 79: 1587-1591, 1998.
13. Campbell PK, Jones KE, Huber RJ, Horch KW, and Normann RA. A silicon-based, three-dimensional neural interface: manufacturing processes for an intracortical electrode array. IEEE Trans Biomed Eng 38: 758-768, 1991.
14. Chen J, Wise KD, Hetke JF, and Bledsoe SC Jr. A multichannel neural probe for selective chemical delivery at the cellular level. IEEE Trans Biomed Eng 44: 760-769, 1997.
15. Churchland PS and Sejnowski TJ. The Computational brain. Cambridge, MA: MIT Press, 1992.
16. Csicsvari J, Henze DA, Jamieson B, Harris KD, Sirota A, Bartho P, Wise KD, and Buzsaki G. Massively parallel recording of unit and local field potentials with silicon-based electrodes. J Neurophysiol 90: 1314-1323, 2003.
17. Cui X, Wiler J, Dzaman M, Altschuler RA, and Martin DC. In vivo studies of polypyrrole/peptide coated neural probes. Biomaterials 24: 777-787, 2003.
18. DiCarlo JJ, Lane JW, Hsiao SS, and Johnson KO. Marking microelectrode penetrations with fluorescent dyes. J Neurosci Methods 64: 75-81, 1996.
19. Drake KL, Wise KD, Farraye J, Anderson DJ, and BeMent SL. Performance of planar multisite microprobes in recording extracellular single-unit intracortical activity. IEEE Trans Biomed Eng 35: 719-732, 1988.
20. Ensell G, Banks DJ, Richards PR, Balachandran W, and Ewins DJ. Silicon-based microelectrodes for neurophysiology, micromachined from silicon-on-insulator wafers. Med Biol Eng Comput 38: 175-179, 2000.
21. Fatt P. Electric potentials occurring around a neuron during its antidromic activation. J Neurophysiol 20: 27-60, 1957.
22. Freund TF and Buzsaki G. Interneurons of the hippocampus. Hippocampus 6: 347-470, 1996.
23. Fromherz P. Neuroelectronic interfacing: semiconductor chips with ion channels, nerve cells, and brain. In: Nanoelectronics and Information Technology, edited by Waser R. Berlin: Wiley-VCH Verlag, 2003, p. 781-810.
24. Fu YX, Djupsund K, Gao H, Hayden B, Shen K, and Dan Y. Temporal specificity in the cortical plasticity of visual space representation. Science 296: 1999-2003, 2002.
25. Gilbert CD, Sigman M, and Crist RE. The neural basis of perceptual learning. Neuron 31: 681-697, 2001.
26. Gray CM, Maldonado PE, Wilson M, and McNaughton B. Tetrodes markedly improve the reliability and yield of multiple single-unit isolation from multi-unit recordings in cat striate cortex. J Neurosci Methods 63: 43-54, 1995.
27. Harris KD, Henze DA, Csicsvari J, Hirase H, and Buzsaki G. Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements. J Neurophysiol 84: 401-414, 2000.
28. Henze DA, Borhegyi Z, Csicsvari J, Mamiya A, Harris KD, and Buzsaki G. Intracellular features predicted by extracellular recordings in the hippocampus in vivo. J Neurophysiol 84: 390-400, 2000.
29. Hetherington PA, Blanche TJ, and Swindale NV. Prediction of neuron 3D cortical location by triangulation of spike signals from silicon electrode recording arrays. Soc Neurosci Abstr 25, 1422, 1999.
30. Hetherington PA and Swindale NV. Receptive field and orientation scatter studied by tetrode recordings in cat area 17. Vis Neurosci 16: 637-652, 1999.
31. Hetke JF, Lund JL, Najafi K, Wise KD, and Anderson DJ. Silicon ribbon cables for chronically implantable microelectrode arrays. IEEE Trans Biomed Eng 41: 314-321, 1994.
32. Hirsch JA, Martinez LM, Pillai C, Alonso JM, Wang Q, and Sommer FT. Functionally distinct inhibitory neurons at the first stage of visual cortical processing. Nat Neurosci 6: 1300-1308, 2003.
33. Hoogerwerf AC and Wise KD. A three-dimensional microelectrode array for chronic neural recording. IEEE Trans Biomed Eng 41: 1136-1146, 1994.
34. Hubener M, Shoham D, Grinvald A, and Bonhoeffer T. Spatial relationships among three columnar systems in cat area 17. J Neurosci 17: 9270-9284, 1997.
35. Humphrey DR. Neural networks and systems modeling. In: Biological foundations of Biomedical Engineering, edited by Kline J. Boston, MA: Little, Brown, 1976.
36. Jog M, Connolly C, Kubota Y, Iyengarm D, Garrido L, Harlan R, and Graybiel A. Tetrode technology: advances in implantable hardware, neuroimaging, and data analysis techniques. J Neurosci Methods 117: 141-152, 2002.
37. Johnston D, Magee JC, Colbert CM, and Cristie BR. Active properties of neuronal dendrites. Annu Rev Neurosci 19: 165-186, 1996.
38. Jones JP and Palmer LA. The two-dimensional spatial structure of simple receptive fields in cat striate cortex. J Neurophysiol 58: 1187-1211, 1987.
39. Kandel A and Buzsaki G. Cellular-synaptic generation of sleep spindles, spike-and-wave discharges, and evoked thalamocortical responses in the neocortex of the rat. J Neurosci 17: 6783-6797, 1997.
40. Kewley DT, Hills MD, Borkholder DA, Opris IE, Maluf NI, Storment CW, Bower JM, and Kovacs GT. Plasma-etched neural probes. Sensors and Actuators A: Phys A 58: 27-35, 1997.
41. Kovacs GT, Storment CW, Halks-Miller M, Belczynski CR, Jr, Della Santina CC, Lewis ER, and Maluf NI. Silicon-substrate microelectrode arrays for parallel recording of neural activity in peripheral and cranial nerves. IEEE Trans Biomed Eng 41: 567-577, 1994.
42. Magee JC and Johnston D. A synaptically controlled, associative signal for Hebbian plasticity in hippocampal neurons. Science 275: 209-213, 1997.
43. Mahalanobis PC. On the generalized distance in statistics. Proc Natl Inst Sci India 2: 49-55, 1936.
44. Maldonado PE, Godecke I, Gray CM, and Bonhoeffer T. Orientation selectivity in pinwheel centers in cat striate cortex. Science 276: 1551-1555, 1997.
45. Maldonado PE and Gray CM. Heterogeneity in local distributions of orientation-selective neurons in the cat primary visual cortex. Vis Neurosci 13: 509-516, 1996.
46. Markram H, Lubke J, Frotscher M, and Sakmann B. Regulation of synaptic efficacy by coincidence of postsynaptic APs and EPSPs. Science 275: 213-215, 1997.
47. McNaughton BL, O'Keefe J, and Barnes CA. The stereotrode: a new technique for simultaneous isolation of several single units in the central nervous system from multiple unit records. J Neurosci Methods 8: 391-397, 1983.
48. Mensinger AF, Anderson DJ, Buchko CJ, Johnson MA, Martin DC, Tresco PA, Silver RB, and Highstein SM. Chronic recording of regenerating VIIIth nerve axons with a sieve electrode. J Neurophysiol 83: 611-615, 2000.
49. Mitzdorf U. Current source-density method and application in cat cerebral cortex: investigation of evoked potentials and EEG phenomena. Physiol Rev 65: 37-100, 1985.
50. Mitzdorf U and Singer W. Prominent excitatory pathways in the cat visual cortex (A 17 and A 18): a current source density analysis of electrically evoked potentials. Exp Brain Res 33: 371-394, 1978.
51. Najafi K and Hetke JF. Strength characterization of silicon microprobes in neurophysiological tissues. IEEE Trans Biomed Eng 37: 474-481, 1990.
52. Najafi K, Ji J, and Wise KD. Scaling limitations of silicon multichannel recording probes. IEEE Trans Biomed Eng 37: 1-11, 1990.
53. Najafi K, Wise K, and Mochizuki T. A high-yield ic-compatible multichannel recording array. IEEE Trans Electron Devices 32: 1206-1211, 1985.
54. Najafi K and Wise KD. An implantable multielectrode array with on-chip signal processing. IEEE J Solid-State Circuits 21: 1035-1044, 1986.
55. Nicholson C and Freeman JA. Theory of current source-density analysis and determination of conductivity tensor for anuran cerebellum. J Neurophysiol 38: 356-368, 1975.
56. Niparko JK, Altschuler RA, Xue XL, Wiler JA, and Anderson DJ. Surgical implantation and biocompatibility of central nervous system auditory prostheses. Ann Otol Rhinol Laryngol 98: 965-970, 1989.
57. Norlin P, Kindlundh M, Mouroux A, Yoshida K, and Hormann UG. A 32-site neural recording probe fabricated by DRIE of SOI substrates. J Micromech Microeng 12: 414-419, 2002.
58. Nowak LG, Azouz R, Sanchez-Vives MV, Gray CM, and McCormick DA. Electrophysiological classes of cat primary visual cortical neurons in vivo as revealed by quantitative analyses. J Neurophysiol 89: 1541-1566, 2003.
59. Olshausen BA and Field DJ. What is the other 85% of V1 doing? In: Problems in Systems Neuroscience, edited by Sejnowski TJ and van Hemmen L. Oxford, UK: Oxford Univ. Press. 2005 In press.
60. Paz R, Wise SP, and Vaadia E. Viewing and doing: similar cortical mechanisms for perceptual and motor learning. Trends Neurosci 27: 496-503, 2004.
61. Press WH, Teukolsky SA, Vetterling WT, and Flannery BP. Numerical Recipes in Fortran 77: The Art of Scientific Computing. Cambridge, MA: Cambridge, 1994.
62. Rathnasingham R, Kipke DR, Bledsoe SC, Jr, and McLaren JD. Characterization of implantable microfabricated fluid delivery devices. IEEE Trans Biomed Eng 51: 138-145, 2004.
63. Rosenthal F, Woodbury JW, and Patton HD. Dipole characteristics of pyramidal cell activity in cat postcruciate cortex. J Neurophysiol 29: 612-625, 1966.
64. Rousche PJ and Normann RA. Chronic recording capability of the Utah Intracortical Electrode Array in cat sensory cortex. J Neurosci Methods 82: 1-15, 1998.
65. Rousche PJ and Normann RA. Chronic intracortical microstimulation (ICMS) of cat sensory cortex using the Utah Intracortical Electrode Array. IEEE Trans Rehabil Eng 7: 56-68, 1999.
66. Spacek MA, Blanche TJ, Douglas RM, and Swindale NV. Signal processing and spike detection methods for high-density silicon electrode arrays. Soc Neurosci Abstr 429.20, 2003.
67. Spence AJ, Hoy RR, and Isaacson MS. A micromachined silicon multielectrode for multiunit recording. J Neurosci Methods 126: 119-126, 2003.
68. Starr A, Wise K, and Csongradi J. An evaluation of photoengraved microelectrodes for extracellular single-unit recording. IEEE Trans Biomed Eng 20: 291-293, 1973.
69. Takahashi K and Matsuo T. Integration of multi-microelectrode and interface circuits by silicon planar and three-dimensional fabrication technology. Sensors Actuators 5: 89-99, 1984.
70. Towe AL. Sampling Single Neuron Activity. In: Bioelectric Recording Techniques, edited by Thompson RF and Patterson MM. New York: Academic, 1973, p. 79-93.
71. Vetter RJ, Williams JC, Hetke JF, Nunamaker EA, and Kipke DR. Chronic neural recording using silicon-substrate microelectrode arrays implanted in cerebral cortex. IEEE Trans Biomed Eng 51: 896-904, 2004.
72. Vornov JJ, Tasker RC, and Coyle JT. Direct observation of the agonist-specific regional vulnerability to glutamate, NMDA, and kainate neurotoxicity in organotypic hippocampal cultures. Exp Neurol 114: 11-22, 1991.
73. Weiland JD and Anderson DJ. Chronic neural stimulation with thin-film, iridium oxide electrodes. IEEE Trans Biomed Eng 47: 911-918, 2000.
74. Wilson MA and McNaughton BL. Dynamics of the hippocampal ensemble code for space. Science 261: 1055-1058, 1993.
75. Wise KD and Najafi K, Microfabrication techniques for integrated sensors and microsystems. Science 254: 1335-1342, 1991.
76. Yao H and Dan Y. Stimulus timing-dependent plasticity in cortical processing of orientation. Neuron 32: 315-323, 2001.
77. Yoon TH, Hwang EJ, Shin DY, Park SI, Oh SJ, Jung SC, Shin HC, and Kim SJ. A micromachined silicon depth probe for multichannel neural recording. IEEE Trans Biomed Eng 47: 1082-1087, 2000.
78. Zhu Z, Wang Y, Xu XZ, and Li CY. A simple and effective method for obtaining stable in vivo whole-cell recordings from visual cortical neurons. Cereb Cortex 12: 585-589, 2002.