AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant telomeric DNA and induce DNA bending in vitro

Molecular Genetics and Genomics

Volumn 273, Issue 1, 2005, Pages 66-75

  Hwang, Moo Gak ^a   Kim, Kyunghye ^a   Lee, Won Kyung ^a   Cho, Myeon Haeng ^a  

^a Yonsei University   (South Korea)

Author keywords

Arabidopsis thaliana; DNA bending; Myb like protein; Telomere; Telomeric DNA binding protein

Indexed keywords

CURVED DNA; DNA BINDING PROTEIN; TELOMERE DNA BINDING PROTEIN 2; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; EUKARYOTE; GENE FUNCTION; GENETIC CODE; HUMAN VERSUS NONHUMAN DATA; INTERMETHOD COMPARISON; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN ISOLATION; SEQUENCE HOMOLOGY; TELOMERE;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; BLEOMYCIN; BLOTTING, NORTHERN; CLONING, MOLECULAR; CLUSTER ANALYSIS; DNA; DNA PRIMERS; GENE EXPRESSION REGULATION, PLANT; GLUTATHIONE TRANSFERASE; MOLECULAR SEQUENCE DATA; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; TELOMERE; TELOMERE-BINDING PROTEINS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EUKARYOTA;

EID: 17444372705     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-004-1096-3     Document Type: Article

References (53)

1. Ancelin K, Brunori M, Bauwens S, Koering CE, Brun C, Ricoul M, Pommier JP, Sabatier L, Gilson E (2002) Targeting assay to study the cis functions of human telomeric proteins: evidence for inhibition of telomerase by TRF1 and for activation of telomere degradation by TRF2. Mol Cell Biol 22:3474-3487
2. Baumann P, Cech TR (2001) Pot1, the putative telomere end-binding protein in fission yeast and humans. Science 292:1171-1175
3. Bianchi A, Smith S, Chong L, Elias P, de Lange T (1997) TRF1 is a dimer and bends telomeric DNA. EMBO J 16:1785-1794
4. Bianchi A, Stansel RM, Fairall L, Griffith JD, Rhodes D, de Lange T (1999) TRF1 binds a bipartite telomeric site with extreme spatial flexibility. EMBO J 18:5735-5744
5. Cervantes RB, Lundblad V (2002) Mechanisms of chromosome-end protection. Curr Opin Cell Biol 14:351-356
6. Cesare AJ, Quinney N, Willcox S, Subramanian D, Griffith JD (2003) Telomere looping in P. sativum (common garden pea). Plant J 36:271-279
7. Chen CM, Wang CT, Ho CH (2001) A plant gene encoding a Myb-like protein that binds telomeric GGTTAG repeats in vitro. J Biol Chem 276:16511-16519
8. Chong L, van Steensel B, Broccoli D, Erdjument-Bromage H, Hanish J, Tempst P, de Lange T (1995) A human telomeric protein. Science 270:1663-1667
9. Cooper JP, Nimmo ER, Allshire RC, Cech TR (1997) Regulation of telomere length and function by a Myb-domain protein in fission yeast. Nature 385:744-747
10. D'Adda di Fagagna F, Teo SH, Jackson SP (2004) Functional links between telomeres and proteins of the DNA-damage response. Genes Dev 18:1781-1799
11. De Lange T (2002) Protection of mammalian telomeres. Oncogene 21:532-540
12. Fairall L, Chapman L, Moss H, de Lange T, Rhodes D (2001) Structure of the TRFH dimerization domain of the human telomeric proteins TRF1 and TRF2. Mol Cell 8:351-361
13. Ferrari S, Harley VR, Pontiggia A, Goodfellow PN, Lovell-Badge R, Bianchi ME (1992) SRY, like HMG, recognizes sharp angles in DNA. EMBO J 11:4497-4506
14. Greider CW (1996) Telomere length regulation. Annu Rev Biochem 65:337-365
15. Griffith JD, Bianchi A, de Lange T (1998) TRF1 promotes parallel pairing of telomeric tracts in vitro. J Mol Biol 278:79-88
16. Griffith JD, Comeau L, Rosenfield S, Stansel RM, Bianchi A, Moss H, de Lange T (1999) Mammalian telomeres end in a large duplex loop. Cell 97:503-514
17. Heitzeberg F, Chen IP, Hartung F, Orel N, Angelis KJ, Puchta H (2004) The Rad17 homologue of Arabidopsis is involved in the regulation of DNA damage repair and homologous recombination. Plant J 38:954-968
18. Hwang MG, Chung IK, Kang BG, Cho MH (2001) Sequence-specific binding property of Arabidopsis thaliana telomeric DNA binding protein 1 (AtTBP1). FEBS Lett 503:35-40
19. Karlseder J, Smogorzewska A, de Lange T (2002) Senescence induced by altered telomere state, not telomere loss. Science 295:2446-2449
20. Karlseder J, Hoke K, Mirzoeva OK, Bakkenist C, Kastan MB, Petrini JH, de Lange T (2004) The telomeric protein TRF2 binds the ATM kinase and can inhibit the ATM-dependent DNA damage response. PLoS Biol 2:1150-1156
21. Kim SH, Kaminker P, Campisi J (1999) TIN2, a new regulator of telomere length in human cells. Nat Genet 23:405-412
22. Klapper W, Qian W, Schulte C, Parwaresch R (2003) DNA damage transiently increases TRF2 mRNA expression and telomerase activity. Leukemia 17:2007-2015
23. König P, Giraldo R, Chapman L, Rhodes D (1996) The crystal structure of the DNA-binding domain of yeast RAP1 in complex with telomeric DNA. Cell 85:125-136
24. König P, Fairall L, Rhodes D (1998) Sequence-specific DNA recognition by the myb-like domain of the human telomere binding protein TRF1: a model for the protein-DNA complex. Nucleic Acids Res 26:1731-1740
25. Li B, Oestreich S, de Lange T (2000) Identification of human Rap1: implications for telomere evolution. Cell 101:471-483
26. Manevski A, Bertoni G, Bardet C, Tremousaygue D, Lescure B (2000) In synergy with various cis-acting elements, plant insterstitial telomere motifs regulate gene expression in Arabidopsis root meristems. FEBS Lett 483:43-46
27. Marcand S, Gilson E, Shore D (1997) A protein-counting mechanism for telomere length regulation in yeast. Science 275:986-990
28. Marian CO, Bordoli SJ, Goltz M, Santarella RA, Jackson LP, Danilevskaya O, Beckstette M, Meeley R, Bass HW (2003) The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro. Plant Physiol 133:1336-1350
29. McEachern MJ, Krauskopf A, Blackburn EH (2000) Telomeres and their control. Annu Rev Genet 34:331-358
30. McKnight TD, Shippen DE (2004) Plant telomere biology. Plant Cell 16:794-803
31. McKnight TD, Riha K, Shippen DE (2002) Telomeres, telomerase, and stability of the plant genome. Plant Mol Biol 48:331-337
32. Muller T, Gilson E, Schmidt R, Giraldo R, Sogo J, Gross H, Gasser SM (1994) Imaging the asymmetrical DNA bend induced by repressor activator protein 1 with scanning tunneling microscopy. J Struct Biol 113:1-12
33. Multani AS, Ozen M, Narayan S, Kumar V, Chandra J, McConkey DJ (2000) Caspase-dependent apoptosis induced by telomere cleavage and TRF loss. Neoplasia 2:339-345
34. Narayan S, Jaiswal AS, Multani AS, Pathak S (2001) DNA damage-induced cell cycle checkpoints involve both p53-dependent and -independent pathways: role of telomere repeat binding factor 2. Br J Cancer 85:898-901
35. Nishikawa T, Nagadoi A, Yoshimura S, Aimoto S, Nishimura Y (1998) Solution structure of the DNA-binding domain of human telomeric protein, hTRF1. Structure 6:1057-1065
36. Nishikawa T, Okamura H, Nagadoi A, Konig P, Rhodes D, Nishimura Y (2001) Solution structure of a telomeric DNA complex of human TRF1. Structure (Cambridge) 9:1237-1251
37. Regad F, Lebas M, Lescure B (1994) Interstitial telomeric repeats within the Arabidopsis thaliana genome. J Mol Biol 239:163-169
38. Rubio MA, D'Avalos AR, Campisi J (2004) Telomere length mediates the effects of telomerase on the cellular response to genotoxic stress. Exp Cell Res 298:17-27
39. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
40. Schrumpfova P, Kuchar M, Mikova G, Skrisovska L, Kubicarova T, Fajkus J (2004) Characterization of two Arabidopsis thaliana Myb-like proteins showing affinity to telomeric DNA sequence. Genome 47:316-324
41. Smith S, Giriat I, Schmitt A, de Lange T (1998) Tankyrase, a poly(ADP-ribose) polymerase at human telomeres. Science 282:1484-1487
42. Stansel RM, de Lange T, Griffith JD (2001) T-loop assembly in vitro involves binding of TRF2 near the 3′ telomeric overhang. EMBO J 20:5532-5540
43. Sun CW, Griffen S, Callis J (1997) A model for the evolution of polyubiquitin genes from the study of Arabidopsis thaliana ecotypes. Plant Mol Biol 34:745-758
44. Thompson JF, Landy A (1988) Empirical estimation of protien-induced DNA bending angles - applications to lambda site-specific recombination. Nucleic Acids Res 16:9678-9705
45. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
46. Van Steensel B, Smogorzewska A, de Lange T (1998) TRF2 protects human telomeres from end-to-end fusions. Cell 92:401-413
47. Vassetzky NS, Gilson E, Gasser SM (1999) Telomere-binding activities of fission yeast. Mol Biol 33:570-576
48. Wei C, Price M (2003) Protecting the terminus: t-loops and telomere end-binding proteins. Cell Mol Life Sci 60:2283-2294
49. Yang SW, Kim DH, Lee JJ, Chun YJ, Lee JH, Kim YJ, Chung IK, Kim WT (2003) Expression of the telomeric repeat binding factor gene NgTRF1 is closely coordinated with the cell division program in tobacco BY-2 suspension culture cells. J Biol Chem 278:21395-21407
50. Yu EY, Kim SE, Kim JH, Ko JH, Cho MH, Chung IK (2000) Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1. J Biol Chem 275:24208-24214
51. Zentgraf U (1995) Telomere-binding proteins of Arabidopsis thaliana. Plant Mol Biol 27:467-475
52. Zhou XZ, Lu KP (2001) The Pin2/TRF1-interacting protein PinX1 is a potent telomerase inhibitor. Cell 107:347-359
53. Zwieb C, Adhya S (1994) Improved plasmid vectors for the analysis of protein-induced DNA bending. Methods Mol Biol 30:281-294