메뉴 건너뛰기




Volumn 234, Issue 4, 2005, Pages 487-495

Profiling cytogenetic diversity with entropy-based karyotypic analysis

Author keywords

Cancer; Chromosome aberrations; Cytogenetics; Entropy; Information theory; Karyotype; Solid tumor

Indexed keywords

KARYOTYPE;

EID: 16244406890     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jtbi.2004.12.006     Document Type: Article
Times cited : (16)

References (44)
  • 1
    • 0034712858 scopus 로고    scopus 로고
    • Special Feature: Evolution of biological complexity
    • C. Adami, C. Ofria, and T.C. Collier Special Feature Evolution of biological complexity Proc. Natl Acad. Sci. USA 97 2000 4463 4468
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 4463-4468
    • Adami, C.1    Ofria, C.2    Collier, T.C.3
  • 3
    • 0033388315 scopus 로고    scopus 로고
    • Genetic instability and darwinian selection in tumours
    • 10.1016/S0962-8924(99)01661-X
    • D.P. Cahill, K.W. Kinzler, B. Vogelstein, and C. Lengauer Genetic instability and darwinian selection in tumours Trends Cell Biol. 9 1999 M57 M60 10.1016/S0962-8924(99)01661-X
    • (1999) Trends Cell Biol. , vol.9
    • Cahill, D.P.1    Kinzler, K.W.2    Vogelstein, B.3    Lengauer, C.4
  • 4
    • 0034657861 scopus 로고    scopus 로고
    • Bootstrap confidence intervals: When, which, what? a practical guide for medical statisticians
    • J. Carpenter, and J. Bithell Bootstrap confidence intervals when, which, what? A practical guide for medical statisticians Stat. Med. 19 2000 1141 1164
    • (2000) Stat. Med. , vol.19 , pp. 1141-1164
    • Carpenter, J.1    Bithell, J.2
  • 5
    • 0035816267 scopus 로고    scopus 로고
    • Aneuploidy and prognosis of non-small-cell lung cancer: A meta-analysis of published data
    • 10.1054/bjoc.2001.1892
    • D. Choma, J.P. Daures, X. Quantin, and J.L. Pujol Aneuploidy and prognosis of non-small-cell lung cancer a meta-analysis of published data Br. J. Cancer 85 2001 14 22 10.1054/bjoc.2001.1892
    • (2001) Br. J. Cancer , vol.85 , pp. 14-22
    • Choma, D.1    Daures, J.P.2    Quantin, X.3    Pujol, J.L.4
  • 6
    • 0031909908 scopus 로고    scopus 로고
    • The distribution of variation in regulatory gene segments, as present in MHC class II promoters
    • L.G. Cowell, T.B. Kepler, M. Janitz, R. Lauster, and N.A. Mitchison The distribution of variation in regulatory gene segments, as present in MHC class II promoters Genome Res. 8 1998 124 134
    • (1998) Genome Res. , vol.8 , pp. 124-134
    • Cowell, L.G.1    Kepler, T.B.2    Janitz, M.3    Lauster, R.4    Mitchison, N.A.5
  • 7
    • 0038668792 scopus 로고    scopus 로고
    • Instability of chromosome structure in cancer cells increases exponentially with degrees of aneuploidy
    • 10.1016/S0165-4608(03)00003-7
    • A. Fabarius, R. Hehlmann, and P.H. Duesberg Instability of chromosome structure in cancer cells increases exponentially with degrees of aneuploidy Cancer Genet. Cytogenet. 143 2003 59 72 10.1016/S0165-4608(03)00003-7
    • (2003) Cancer Genet. Cytogenet. , vol.143 , pp. 59-72
    • Fabarius, A.1    Hehlmann, R.2    Duesberg, P.H.3
  • 9
    • 0033572425 scopus 로고    scopus 로고
    • DNA ploidy in colorectal cancer, heterogeneity within and between tumors and relation to survival
    • H.L. Flyger, J.K. Larsen, H.J. Nielsen, and I.J. Christensen DNA ploidy in colorectal cancer, heterogeneity within and between tumors and relation to survival Cytometry 38 1999 293 300
    • (1999) Cytometry , vol.38 , pp. 293-300
    • Flyger, H.L.1    Larsen, J.K.2    Nielsen, H.J.3    Christensen, I.J.4
  • 10
    • 0034100903 scopus 로고    scopus 로고
    • The application of Shannon entropy in the identification of putative drug targets
    • 10.1016/S0303-2647(99)00077-5
    • S. Fuhrman, M.J. Cunningham, X.L. Wen, G. Zweiger, J.J. Seilhamer, and R. Somogyi The application of Shannon entropy in the identification of putative drug targets Biosystems 55 2000 5 14 10.1016/S0303-2647(99)00077-5
    • (2000) Biosystems , vol.55 , pp. 5-14
    • Fuhrman, S.1    Cunningham, M.J.2    Wen, X.L.3    Zweiger, G.4    Seilhamer, J.J.5    Somogyi, R.6
  • 11
    • 0033958685 scopus 로고    scopus 로고
    • Frequent genetic heterogeneity in the clonal evolution of gynecological carcinosarcoma and its influence on phenotypic diversity
    • H. Fujii, M. Yoshida, Z.X. Gong, T. Matsumoto, Y. Hamano, M. Fukunaga, R.H. Hruban, E. Gabrielson, and T. Shirai Frequent genetic heterogeneity in the clonal evolution of gynecological carcinosarcoma and its influence on phenotypic diversity Cancer Res. 60 2000 114 120
    • (2000) Cancer Res. , vol.60 , pp. 114-120
    • Fujii, H.1    Yoshida, M.2    Gong, Z.X.3    Matsumoto, T.4    Hamano, Y.5    Fukunaga, M.6    Hruban, R.H.7    Gabrielson, E.8    Shirai, T.9
  • 13
    • 0033912369 scopus 로고    scopus 로고
    • Relationship between chromosomal instability and intratumoral regional DNA ploidy heterogeneity in primary gastric cancers
    • T. Furuya, T. Uchiyama, T. Murakami, A. Adachi, S. Kawauchi, A. Oga, T. Hirano, and K. Sasaki Relationship between chromosomal instability and intratumoral regional DNA ploidy heterogeneity in primary gastric cancers Clin. Cancer Res. 6 2000 2815 2820
    • (2000) Clin. Cancer Res. , vol.6 , pp. 2815-2820
    • Furuya, T.1    Uchiyama, T.2    Murakami, T.3    Adachi, A.4    Kawauchi, S.5    Oga, A.6    Hirano, T.7    Sasaki, K.8
  • 14
    • 0036645517 scopus 로고    scopus 로고
    • Application of Information Theory and Extreme Physical Information to Carcinogenesis
    • R.A. Gatenby, and B.R. Frieden Application of Information Theory and Extreme Physical Information to Carcinogenesis Cancer Res. 62 2002 3675 3684
    • (2002) Cancer Res. , vol.62 , pp. 3675-3684
    • Gatenby, R.A.1    Frieden, B.R.2
  • 15
    • 0037079003 scopus 로고    scopus 로고
    • Rules for Making Human Tumor Cells
    • W.C. Hahn, and R.A. Weinberg Rules for Making Human Tumor Cells N. Engl. J. Med. 347 2002 1593 1603
    • (2002) N. Engl. J. Med. , vol.347 , pp. 1593-1603
    • Hahn, W.C.1    Weinberg, R.A.2
  • 16
    • 0036570224 scopus 로고    scopus 로고
    • Multivariate analysis of chromosomal imbalances in breast cancer delineates cytogenetic pathways and reveals complex relationships among imbalances
    • M. Hoglund, D. Gisselsson, G.B. Hansen, T. Sall, and F. Mitelman Multivariate analysis of chromosomal imbalances in breast cancer delineates cytogenetic pathways and reveals complex relationships among imbalances Cancer Res. 62 2002 2675 2680
    • (2002) Cancer Res. , vol.62 , pp. 2675-2680
    • Hoglund, M.1    Gisselsson, D.2    Hansen, G.B.3    Sall, T.4    Mitelman, F.5
  • 17
    • 0037108710 scopus 로고    scopus 로고
    • Dissecting karyotypic patterns in colorectal tumors: Two distinct but overlapping pathways in the adenoma-carcinoma transition
    • M. Hoglund, D. Gisselsson, G.B. Hansen, T. Sall, F. Mitelman, and M. Nilbert Dissecting karyotypic patterns in colorectal tumors two distinct but overlapping pathways in the adenoma-carcinoma transition Cancer Res. 62 2002 5939 5946
    • (2002) Cancer Res. , vol.62 , pp. 5939-5946
    • Hoglund, M.1    Gisselsson, D.2    Hansen, G.B.3    Sall, T.4    Mitelman, F.5    Nilbert, M.6
  • 18
    • 0037081817 scopus 로고    scopus 로고
    • Karyotypic heterogeneity and clonal evolution in squamous cell carcinomas of the head and neck
    • 10.1016/S0165-4608(01)00535-0.
    • C. Jin, Y. Jin, J. Wennerberg, J. Akervall, M. Dictor, and F. Mertens Karyotypic heterogeneity and clonal evolution in squamous cell carcinomas of the head and neck Cancer Genet. Cytogenet. 132 2002 85 96 10.1016/S0165-4608(01) 00535-0.
    • (2002) Cancer Genet. Cytogenet. , vol.132 , pp. 85-96
    • Jin, C.1    Jin, Y.2    Wennerberg, J.3    Akervall, J.4    Dictor, M.5    Mertens, F.6
  • 19
    • 0030249911 scopus 로고    scopus 로고
    • Alteration of numerical chromosomal aberrations during progression of colorectal tumors revealed by a combined fluorescence in situ hybridization and DNA ploidy analysis of intratumoral heterogeneity
    • 10.1016/S0165-4608(96)00066-0
    • K. Katsura, H. Sugihara, S. Nakai, and S. Fujita Alteration of numerical chromosomal aberrations during progression of colorectal tumors revealed by a combined fluorescence in situ hybridization and DNA ploidy analysis of intratumoral heterogeneity Cancer Genet. Cytogenet. 90 1996 146 153 10.1016/S0165-4608(96)00066-0
    • (1996) Cancer Genet. Cytogenet. , vol.90 , pp. 146-153
    • Katsura, K.1    Sugihara, H.2    Nakai, S.3    Fujita, S.4
  • 20
    • 0025090907 scopus 로고
    • The use of information theory to analyze genomic changes in neoplasia
    • 10.1016/0025-5564(90)90038-Z
    • W.S. Kendal The use of information theory to analyze genomic changes in neoplasia Math. Biosci. 100 1990 143 159 10.1016/0025-5564(90)90038-Z
    • (1990) Math. Biosci. , vol.100 , pp. 143-159
    • Kendal, W.S.1
  • 22
    • 0034724312 scopus 로고    scopus 로고
    • Aneuploidy vs. gene mutation hypothesis of cancer: Recent study claims mutation but is found to support aneuploidy
    • R. Li, A. Sonik, R. Stindl, D. Rasnick, and P. Duesberg Aneuploidy vs. gene mutation hypothesis of cancer recent study claims mutation but is found to support aneuploidy Proc. Natl Acad. Sci. USA 97 2000 3236 3241
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 3236-3241
    • Li, R.1    Sonik, A.2    Stindl, R.3    Rasnick, D.4    Duesberg, P.5
  • 26
    • 0037178734 scopus 로고    scopus 로고
    • Debate surges over the origins of genomic defects in cancer
    • 10.1126/science.297.5581.544
    • J. Marx Debate surges over the origins of genomic defects in cancer Science 297 2002 544 546 10.1126/science.297.5581.544
    • (2002) Science , vol.297 , pp. 544-546
    • Marx, J.1
  • 27
    • 0037406990 scopus 로고    scopus 로고
    • Does the intrinsic instability of aneuploid genomes have a causal role in cancer?
    • 10.1016/S0168-9525(03)00057-X
    • M.A. Matzke, M.M. Florian, T. Kanno, and A.J.M. Matzke Does the intrinsic instability of aneuploid genomes have a causal role in cancer? Trends Genet. 19 2003 253 256 10.1016/S0168-9525(03)00057-X
    • (2003) Trends Genet. , vol.19 , pp. 253-256
    • Matzke, M.A.1    Florian, M.M.2    Kanno, T.3    Matzke, A.J.M.4
  • 28
    • 0003781610 scopus 로고    scopus 로고
    • Mitelman, F., Johansson, B., Mertens, F., (Eds.)
    • Mitelman Database of Chromosome Aberrations in Cancer, 2004. In: Mitelman, F., Johansson, B., Mertens, F., (Eds.), http://cgap.nci.nih.gov/ Chromosomes/Mitelman.
    • (2004) Mitelman Database of Chromosome Aberrations in Cancer
  • 30
    • 0034125650 scopus 로고    scopus 로고
    • Recurrent chromosome aberrations in cancer
    • 10.1016/S1383-5742(00)00006-5
    • F. Mitelman Recurrent chromosome aberrations in cancer Mutat. Res. 462 2000 247 253 10.1016/S1383-5742(00)00006-5
    • (2000) Mutat. Res. , vol.462 , pp. 247-253
    • Mitelman, F.1
  • 31
    • 0030934173 scopus 로고    scopus 로고
    • Clinical significance of cytogenetic findings in solid tumors
    • 10.1016/S0165-4608(96)00252-X
    • F. Mitelman, B. Johansson, N. Mandahl, and F. Mertens Clinical significance of cytogenetic findings in solid tumors Cancer Genet. Cytogenet. 95 1997 1 8 10.1016/S0165-4608(96)00252-X
    • (1997) Cancer Genet. Cytogenet. , vol.95 , pp. 1-8
    • Mitelman, F.1    Johansson, B.2    Mandahl, N.3    Mertens, F.4
  • 35
    • 0141576687 scopus 로고    scopus 로고
    • The significance of unstable chromosomes in colorectal cancer
    • 10.1038/nrc1165
    • H. Rajagopalan, M.A. Nowak, B. Vogelstein, and C. Lengauer The significance of unstable chromosomes in colorectal cancer Nature Rev. Cancer 3 2003 695 701 10.1038/nrc1165
    • (2003) Nature Rev. Cancer , vol.3 , pp. 695-701
    • Rajagopalan, H.1    Nowak, M.A.2    Vogelstein, B.3    Lengauer, C.4
  • 36
    • 0037313930 scopus 로고    scopus 로고
    • The structural nature of chromosomal instability in colon cancer cells
    • M. Ribas, L. Masramon, G. Aiza, G. Capella, R. Miro, and M.A. Peinado The structural nature of chromosomal instability in colon cancer cells FASEB J. 17 2003 289 291
    • (2003) FASEB J. , vol.17 , pp. 289-291
    • Ribas, M.1    Masramon, L.2    Aiza, G.3    Capella, G.4    Miro, R.5    Peinado, M.A.6
  • 37
    • 0037460092 scopus 로고    scopus 로고
    • On parametric evenness measures
    • 10.1016/S0022-5193(03)00026-2
    • C. Ricotta On parametric evenness measures J. Theor. Biol. 222 2003 189 197 10.1016/S0022-5193(03)00026-2
    • (2003) J. Theor. Biol. , vol.222 , pp. 189-197
    • Ricotta, C.1
  • 38
    • 0033035955 scopus 로고    scopus 로고
    • Genomic changes defining the genesis, progression, and malignancy potential in solid human tumors: A phenotype genotype correlation
    • T. Ried, K. Heselmeyer-Haddad, H. Blegen, E. Schrock, and G. Auer Genomic changes defining the genesis, progression, and malignancy potential in solid human tumors A phenotype genotype correlation Genes Chromosomes Cancer 25 1999 195 204
    • (1999) Genes Chromosomes Cancer , vol.25 , pp. 195-204
    • Ried, T.1    Heselmeyer-Haddad, K.2    Blegen, H.3    Schrock, E.4    Auer, G.5
  • 40
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • C.E. Shannon A mathematical theory of communication Bell Systems Tech. J. 27 1948 379 423 623-656
    • (1948) Bell Systems Tech. J. , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 41
    • 0141465053 scopus 로고    scopus 로고
    • Genomic instability-the engine of tumorigenesis?
    • 10.1038/nrc1170
    • O.M. Sieber, K. Heinimann, and I.P. Tomlinson Genomic instability-the engine of tumorigenesis? Nature Rev. Cancer 3 2003 701 708 10.1038/nrc1170
    • (2003) Nature Rev. Cancer , vol.3 , pp. 701-708
    • Sieber, O.M.1    Heinimann, K.2    Tomlinson, I.P.3
  • 43
    • 0347762556 scopus 로고    scopus 로고
    • From polyploidy to aneuploidy, genome instability and cancer
    • 10.1038/nrm1276
    • Z. Storchova, and D. Pellman From polyploidy to aneuploidy, genome instability and cancer Nat. Rev. Mol. Cell Biol. 5 2004 45 54 10.1038/nrm1276
    • (2004) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 45-54
    • Storchova, Z.1    Pellman, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.