CCR5 chemokine receptor gene evolution in New World monkeys (Platyrrhini, Primates): Implication on resistance to lentiviruses

Infection, Genetics and Evolution

Volumn 5, Issue 3 SPEC. ISS., 2005, Pages 271-280

  Ribeiro, Ieda P ^a   Schrago, Carlos G ^a   Soares, Esmeralda A ^a   Pissinatti, Alcides ^b   Seuanez, Hector N ^a   Russo, Claudia A M ^a   Tanuri, Amilcar ^a   Soares, Marcelo A ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b Centro de Primatologia do Rio de Janeiro (CPRJ)   (Brazil)

Author keywords

AIDS; CCR5; HIV; Lentivirus; New World monkeys; Platyrrhini

Indexed keywords

CD4 ANTIGEN; CHEMOKINE RECEPTOR CCR5; LYMPHOCYTE ANTIGEN RECEPTOR; MEMBRANE PROTEIN;

ANALYSIS OF VARIANCE; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CELL TYPE; CELLULAR DISTRIBUTION; CERCOPITHECIDAE; CODON; CONTROLLED STUDY; CORRELATION ANALYSIS; DISEASE MODEL; GENE LOCUS; GENE SEQUENCE; GENETIC VARIABILITY; HOMINID; IMMUNE SYSTEM; LENTIVIRINAE; MOLECULAR CLONING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIMATE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DATABASE; PROTEIN FUNCTION; PROTEIN LOCALIZATION; RETROVIRUS INFECTION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION; SPECIES DIFFERENCE; VIRUS RESISTANCE;

ANIMALIA; CATARRHINI; LENTIVIRUS; PLATYRRHINI; PRIMATES;

EID: 14544294374     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2004.07.009     Document Type: Article

References (67)

1. G. Alkhatib C. Combadiere C.C. Broder Y. Feng P.E. Kennedy P.M. Murphy E.A. Berger CC CKR5: A RANTES, MIP-1α MIP-1β receptor as a fusion cofactor for macrophage-tropic HIV-1 Science 272 1996 1955-1958
2. M. Anisimova J.P. Bielawski Z. Yang Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution Mol. Biol. Evol. 18 2001 1585-1592
3. R.E. Atchison J. Gosling F.S. Moteclaro C. Franci L. Digilio I.F. Charo M.A. Goldsmith Multiple extracellular elements of CCR5 and HIV-1 entry: dissociation from response to chemokines Science 274 1996 1924-1926
4. S. Baritaki A. Zafiropoulos M. Sioumpara M. Politis D.A. Spandidos E. Krambovitis Ionic interaction of the HIV-1 V3 domain with CCR5 and deregulation of T lymphocyte function Biochem. Biophys. Res. Commun. 298 2002 574-580
5. F. Barre-Sinoussi J.C. Chermann F. Rey M.T. Nugeyre S. Chamaret J. Gruest C. Dauguet C. Axler-Blin F. Vezinet-Brun C. Rouzioux W. Rozenbaum L. Montagnier Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS) Science 220 1983 868-871
6. B. Beames D. Chaves B. Guerra L. Notvall K.M. Brasky R.E. Lanford Development of a primary tamarin hepatocyte culture system for GB virus-B: A surrogate marker for hepatitis C virus J. Virol. 74 2000 11764-11772
7. B.R. Benefit The permanent dentition and phylogenetic position of Victoriapithecus from Moboko Island Kenya J. Hum. Evol. 25 1993 83-172
8. P.D. Bieniasz Restriction factors: A defense against retroviral infection Trends Microbiol. 11 2003 286-291
9. Z. Chen P. Zhou D.D. Ho N.R. Landau P.A. Marx Genetically divergent strains of simian immunodeficiency virus use CCR5 as a coreceptor for entry J. Virol. 71 1997 2705-2714
10. H. Choe M. Farzan Y. Sun Y. Sullivan N. Rollins B. Ponath P.D. Wu L. Mackay C.R. LaRosa G. Newman W. Gerard N. Gerard C.J. Sodroski The beta-chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates Cell 85 1996 1135-1148
11. R.L. Ciochon A.B. Chiarelli Evolutionary Biology of New World Monkeys and Continental Drift 1980 Plenum Press New York and London
12. H. Contamin C. Behr O. Mercereau-Puijalon J. Michel Plasmodium falciparum in the squirrel monkey (Saimiri sciureus): Infection of non-splenectomised animals as a model for exploring clinical manifestations of malaria Microbes Infect. 2 2000 945-954
13. S. Eastel Molecular evidence of the early divergence of placental mammals BioEssays 21 1999 1052-1059
14. A.L. Edinger A. Amedee K. Miller B.J. Doranz M. Endres M. Sharron M. Samson Z.H. Lu J.E. Clements M. Murphey-Corb S.C. Peiper M. Parmentier C.C. Broder R.W. Doms Differential utilization of CCR5 by macrophage and T cell tropic simian immunodeficiency virus strains Proc. Natl. Acad. Sci. U.S.A. 94 1997 4005-4010
15. Y. Feng C.C. Broder P.E. Kennedy E.A. Berger HIV-1 entry cofactor: functional cDNA cloning of a seven-transmembrane G protein-coupled receptor Science 272 1996 872-877
16. R.C. Gallo S.Z. Salahuddin M. Popovic G.M. Shearer M. Kaplan B.F. Haynes T.J. Palker R. Redfield J. Oleske B. Safai Frequent detection and isolation of cytopathic retroviruses (HTLV-III) from patients with AIDS and at risk for AIDS Science 224 1984 500-503
17. F. Gao E. Bailes D.L. Robertson Y. Chen C.M. Rodenburg S.F. Michael L.B. Cummins L.O. Arthur M. Peeters G.M. Shaw P.M. Sharp B.H. Hahn Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes Nature 397 1999 436-441
18. C.M. Hill H. Deng D. Unutmaz V.N. Kewalramani L. Bastiani M.K. Gorny S. Zolla-Pazner D.R. Littman Envelope glycoproteins for human immunodeficiency virus types 1 and 2 and simian immunodeficiency virus can use human CCR5 as a coreceptor for viral entry and make direct CD4-dependent interactions with this chemokine receptor J. Virol. 71 1997 6296-6304
19. C.M. Hill D. Kwon M. Jones C.B. Davis S. Marmon B.L. Daugherty J.A. DeMartino M.S. Springer D. Unutmaz D.R. Littman The amino terminus of human CCR5 is required for its function as a receptor for diverse human an simian immunodeficiency virus envelope glycoproteins Virology 248 1998 357-371
20. V.M. Hirsch R.A. Olmsted M. Murphey-Corb R.H. Purcell P.R. Johnson An African primate lentivirus (SIVsm) closely related to HIV-2 Nature 339 1989 389-392
21. W. Hofmann D. Schubert J. LaBonte L. Munson S. Gibson J. Scammell P. Ferrigno J. Sodroski Species-specific, post-entry barriers to primate immunodeficiency virus infection J. Virol. 73 1999 10020-10028
22. T. Huet R. Cheynier A. Meyerhans G. Roelants S. Wain-Hobson Genetic organization of a chimpanzee lentivirus related to HIV-1 Nature 345 1990 356-359
23. A.L. Hughes M. Nei Nucleotide substitution at major histocompatibility complex II loci: Evidence for overdominant selection Proc. Natl. Acad. Sci. U.S.A. 86 1989 958-962
24. F. Huttenrauch A. Nitzki F.T. Lin S. Honing M. Oppermann Beta-arrestin binding to CC chemokine receptor 5 requires multiple C-terminal receptor phosphorylation sites and involves a conserved Asp-Arg-Tyr sequence motif J. Biol. Chem. 277 2002 30769-30777
25. L.L. Jacobs R.W. Downs The evolution of murine rodents in Asia, National Science Museum Monographs Tokyo In: Y. Tomida C.-K. Li T. Setogushi (Eds.), Rodent and Lagomorph Families of Asian Origins and Diversification 1994 149-156
26. P. Kanki M.F. McLane N.W. King Jr. N.L. Letvin R.D. Hunt P. Sehgal M.D. Daniel R.C. Desrosiers M. Essex Serological identification and characterization of a macaque T-lymphotropic retrovirus closely related to HTLV-III Science 228 1985 1199-1201
27. M. Kazanji HTLV type 1 infection in squirrel monkeys (Saimiri sciureus): a promising animal model for HTLV type 1 human infection AIDS Res. Hum. Retroviruses 16 2000 1741-1746
28. M. Kimura Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution Nature 267 1977 275-276
29. S.E. Kuhmann E.J. Platt S.L. Kozak D. Kabat Polymorphisms in the CCR5 genes of African green monkeys and mice implicate specific amino acids in infections by simian and human immunodeficiency viruses J. Virol. 71 1997 8642-8656
30. Kumar, K., 2001. MEGA2: Molecular Evolutionary Genetics Analysis Software. Arizona State University, Tempe, Arizona, USA.
31. K.J. Kunstman B. Puffer B.T. Korber C. Kuiken U.R. Smith J. Kunstman J. Stanton M. Agy R. Shibata A.D. Yoder S. Pillai R.W. Domas P. Marx S.M. Wolinsky Structure and function of CC-chemokine receptor 5 homologues derived from representative primate species and subspecies of the taxonomic suborders Prosimii and Anthropoidea J. Virol. 77 2003 12310-12318
32. J.A. LaBonte G.J. Babcock T. Patel J. Sodroski Blockade of HIV-1 infection of New World monkey cells occurs primarily at the stage of virus entry J. Exp. Med. 196 2002 431-445
33. M.G. Leakey P.S. Ungar A. Walker A new genus of large primate from the late Oligocene of Lothidok, Turkana district Kenya J. Hum. Evol. 28 1995 519-531
34. B. Lee M. Sharron C. Blanpain B.J. Doranz J. Vakili P. Setoh E. Berg G. Liu H.R. Guy S.R. Durell M. Parmentier C.N. Chang K. Price M. Tsang R.W. Doms Epitope mapping of CCR5 reveals multiple conformational states and distinct but overlapping structures involved in chemokine and coreceptor function J. Biol. Chem. 274 1999 9617-9626
35. R. Liu W.A. Paxton S. Choe D. Ceradini S.R. Martin R. Horuk M.E. MacDonald H. Stuhlmann R.A. Koup N.R. Landau Homozygous defect in HIV-1 coreceptor accounts for resistance of some multiply-exposed individuals to HIV-1 infection Cell 86 1996 367-377
36. L.J. Lowenstine N.C. Pedersen J. Higgins K.C. Pallis A. Uyeda P. Marx N.W. Lerche R.J. Munn M.B. Gardner Seroepidemiologic survey of captive Old World primates for antibodies to human and simian retroviruses, and isolation of a lentivirus from a sooty mangabey (Cercocebus atys) Int. J. Cancer 38 1986 563-574
37. M.O. McClure Q.J. Sattentau P.C. Beverley J.P. Hearn A.K. Fitzgerald A.J. Zuckerman R.A. Weiss HIV infection of primary lymphocytes and conservation of CD4 receptor Nature 330 1987 487-489
38. M.O. McClure T.F. Schulz R.S. Tedder J. Gow J.A. McKeating R.A. Weiss A. Baskerville Inoculation of New World primates with the human immunodeficiency virus J. Med. Primatol. 18 1989 329-335
39. S. Mummidi M. Bamshad S.S. Ahuja E. Gonzalez P.M. Feuillet K. Begum M.C. Galvis V. Kostecki A.J. Valente K.K. Murthy L. Haro M.J. Dolan J.S. Allan S.K. Ahuja Evolution of human and non-human primate CC chemokine receptor 5 gene and mRNA J. Biol. Chem. 275 2000 18946-18961
40. J.M. Navenot Z.X. Wang J.O. Trent J.L. Murray Q.X. Hu L. DeLeeuw P.S. Moore Y. Chang S.C. Peiper Molecular anatomy of CCR5 engagement by physiologic and viral chemokines and HIV-1 envelope glycoproteins: differences in primary structural requirements for RANTES, MIP-1 alpha, and vMIP II binding J. Mol. Biol. 313 2001 1181-1193
41. M. Nei T. Gojobori Simple methods for estimating the numbers of synonymous and non-synonymous substitutions Mol. Biol. Evol. 3 1986 418-426
42. M. Nei G.V. Glazko Estimation of divergence times for a few mammalian and several primate species J. Hered. 93 2002 157-164
43. M. Nei S. Kumar Molecular Evolution and Phylogenetics 2000 Oxford University Press New York
44. S.G. Norley G. Kraus J. Ennen J. Bonilla H. Konig R. Kurth Immunological studies of the basis for the apathogenicity of simian immunodeficiency virus from African green monkeys Proc. Natl. Acad. Sci. U.S.A. 87 1990 9067-9071
45. S.G. Norley SIVagm infection of its natural African green monkey host Immunol Lett. 51 1996 53-58
46. M. Oppermann M. Mack A.E. Proudfoot H. Olbrich Differential effects of CC chemokines on CC chemokine receptor 5 (CCR5) phosphorylation and identification of phosphorylation sites on the CCR5 carboxyl terminus J. Biol. Chem. 274 1999 8875-8885
47. M. Peeters V. Courgnaud B. Abela P. Auzel X. Pourrut F. Bibollet-Ruche S. Loul F. Liegeois C. Butel D. Koulagna E. Mpoudi-Ngole G.M. Shaw B.H. Hahn E. Delaporte Risk to human health from a plethora of simian immunodeficiency viruses in primate bushmeat Emerg. Infect. Dis. 8 2002 451-457
48. S. Rana G. Besson D.G. Cook J. Rucker R.J. Smyth Y. Yi J.D. Turner H.H. Guo J.G. Du S.C. Peiper E. Lavi M. Samson F. Libert C. Liesnard G. Vassart R.W. Doms M. Parmentier R.G. Collman Role of CCR5 in infection of primary macrophages and lymphocytes by macrophage-tropic strains of human immunodeficiency virus: Resistance to patient-derived and prototype isolates resulting from the Δccr5 mutation J. Virol. 71 1997 3219-3227
49. T.M. Ross P.D. Bieniasz B.R. Cullen Multiple residues contribute to the inability of murine CCR-5 to function as a coreceptor for macrophage-tropic human immunodeficiency virus type 1 isolates J. Virol. 72 1998 1918-1924
50. S. Saika M. Kidokoro T. Ohkawa A. Aoki K. Suzuki Pathogenicity of mumps virus in the marmoset J. Med. Virol. 66 2002 115-122
51. M. Samson F. Libert B.J. Doranz J. Rucker C. Liesnard C.-M. Farber S. Saragosti C. Lapouméroulie J. Cognaux C. Forceille G. Muyldermans C. Verhofstede G. Burtonboy M. Georges T. Imai S. Rana Y. Yi R.J. Smyth R.G. Collman R.W. Doms G. Vassart M. Parmentier Resistance to HIV-1 infection in Caucasian individuals bearing mutant alleles of the CCR-5 chemokine receptor gene Nature 382 1996 722-725
52. H. Schneider F.C. Canavez I. Sampaio M.A.M. Moreira C.H. Tagliaro H.N. Seuanez Can molecular data place each neotropical monkey in its own branch? Chromosoma 109 2001 515-523
53. C.G. Schrago C.A. Russo Timing the origin of New World monkeys Mol. Biol. Evol. 20 2003 1620-1625
54. S.W. Smith R. Overbeek C.R. Woese W. Gilbert P.M. Gillevet The genetic data environment: An expandable GUI for multiple sequence analysis Comput. Appl. Biosci. 10 1994 671-675
55. R.O. Spertzel Animal models of human immunodeficiency virus infection. Public Health Service Animal Models Committee Antiviral Res. 12 1989 223-230
56. M. Stremlau C.M. Owens M.J. Perron M. Kiessling P. Autissier J. Sodroski The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys Nature 427 2004 848-853
57. M. Takai F. Anaya New specimens of the oldest fossil Platyrrhine, Branisella boliviana, from Salla, Bolivia Am. J. Phys. Anthropol. 99 1996 301-317
58. N. Takezaki A. Rzhetsky M. Nei Phylogenetic test of the molecular clock and linearized tree Mol. Biol. Evol. 12 1995 823-833
59. J.D. Thompson D.G. Higgins T.J. Gibson CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673-4680
60. L. Wu N.P. Gerard R. Wyatt H. Choe C. Parolin N. Ruffing A. Borsetti A.A. Cardoso E. Desjardin W. Newman C. Gerard J. Sodroski CD4-induced interaction of primary HIV-1 gp120 glycoproteins with the chemokine receptor CCR-5 Nature 384 1996 179-183
61. Z. Yang PAML: A program package for phylogenetic analysis by maximum likelihood CABIOS 13 1997 555-556
62. Z. Yang R. Nielsen Estimating synonymous and non-synonymous substitution rates under realistic evolutionary models Mol. Biol. Evol. 17 2000 32-43
63. Z. Yang R. Nielsen N. Goldman A.-M.K. Pedersen Codon-substitution models for heterogeneous selection pressure at amino acid sites Genetics 155 2000 431-449
64. Z. Yang R. Nielsen Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages Mol. Biol. Evol. 19 2002 908-917
65. A. Yoder Z. Yang Estimation of primate speciation dates using local molecular clocks Mol. Biol. Evol. 17 2000 1081-1090
66. Y.W. Zhang O.A. Ryder Y.P. Zhang Sequence evolution of the CCR5 chemokine receptor gene in primates Mol. Biol. Evol. 16 1999 1145-1154
67. Y.W. Zhang O.A. Ryder Y.P. Zhang Intra- and interspecific variation of the CCR5 gene in higher primates Mol. Biol. Evol. 20 2003 1722-1729