Evolution of human and non-human primate CC chemokine receptor 5 gene and mRNA: Potential roles for haplotype and mRNA diversity, differential haplotype-specific transcriptional activity, and altered transcription factor binding to polymorphic nucleotides in the pathogenesis of HIV-1 and simian immunodeficiency virus

Journal of Biological Chemistry

Volumn 275, Issue 25, 2000, Pages 18946-18961

  Mummidi, Srinivas ^a   Bamshad, Mike ^b   Ahuja, Seema S ^a   Gonzalez, Enrique ^a   Feuillet, Pablo M ^a   Begum, Kazi ^a   Galvis, M Cristina ^a   Kostecki, Vannessa ^a   Valente, Anthony J ^a   Murthy, Krishna K ^c   Haro, Luis ^d   Dolan, Matthew J ^e   Allan, Jonathan S ^c   Ahuja, Sunil K ^a  

^a UNIVERSITY OF TEXAS HEALTH SCIENCE CENTER AT SAN ANTONIO   (United States)

^b UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

^c SOUTHWEST FOUNDATION FOR BIOMEDICAL RESEARCH   (United States)

^d UNIVERSITY OF TEXAS AT SAN ANTONIO   (United States)

^e WILFORD HALL MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BETA CHEMOKINE; CHEMOKINE RECEPTOR CCR5; MESSENGER RNA;

ANIMAL CELL; ARTICLE; HAPLOTYPE; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; RECEPTOR GENE; SIMIAN IMMUNODEFICIENCY VIRUS; TRANSCRIPTION REGULATION; VIRUS PATHOGENESIS; VIRUS TRANSMISSION;

ANIMALS; BASE SEQUENCE; EVOLUTION, MOLECULAR; HAPLOTYPES; HIV-1; HUMANS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; PRIMATES; PROTEIN BINDING; RECEPTORS, CCR5; REGULATORY SEQUENCES, NUCLEIC ACID; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA SPLICING; RNA, MESSENGER; SEQUENCE HOMOLOGY, NUCLEIC ACID; SIMIAN IMMUNODEFICIENCY VIRUS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 0034705597     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M000169200     Document Type: Article

References (67)

1. Allan, J. S. (1992) J. NIH Res. 4, 51-54
2. Hirsch, V. M., Campbell, B. J., Bailes, E., Goeken, R., Brown, C., Elkins, W. R., Axthelm, M., Murphey-Corb, M., and Sharp, P. M. (1999) J. Virol. 73, 1036-1045
3. Gojobori, T., Moriyama, E. N., Ina, Y., Ikeo, K., Miura, T., Tsujimoto, H., Hayami, M., and Yokoyama, S. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 4108-4111
4. Gao, F., Bailes, E., Robertson, D. L., Chen, Y., Rodenburg, C. M., Michael, S. F., Cummins, L. B., Arthur, L. O., Peeters, M., Shaw, G. M., Sharp, P. M., and Hahn, B. H. (1999) Nature 397, 436-441
5. Hirsch, V. M., Olmsted, R. A., Murphey-Corb, M., Purcell, R. H., and Johnson, P. R. (1989) Nature 339, 389-392
6. Li, Y., Naidu, Y., Fultz, P., Daniel, M. D., and Desrosiers, R. C. (1989) J. Med. Primatol. 18, 261-269
7. Allan, J. S., Kanda, P., Kennedy, R. C., Cobb, E. K., Anthony, M., and Eichberg, J. W. (1990) AIDS Res. Hum. Retroviruses 6, 275-285
8. Gardner, M. B., and Luciw, P. A. (1989) FASEB J. 3, 2593-2606
9. Jolly, C., Phillips-Conroy, J. E., Turner, T. R., Broussard, S., and Allan, J. S. (1996) J. Med. Primatol. 25, 78-83
10. Unutmaz, D., KewalRamani, V. N., and Littman, D. R. (1998) Semin. Immunol. 10, 225-236
11. Berger, E. A., Murphy, P. M., and Farber, J. M. (1999) Annu. Rev. Immunol. 17, 657-700
12. Liu, R., Paxton, W. A., Choe, S., Ceradini, D., Martin, S. R., Horuk, R., MacDonald, M. E., Stuhlmann, H., Koup, R. A., and Landau, N. R. (1996) Cell 86, 367-377
13. Chen, Z., Kwon, D., Jin, Z., Monard, S., Telfer, P., Jones, M. S., Lu, C. Y., Aguilar, R. F., Ho, D. D., and Marx, P. A. (1998) J. Exp. Med. 188, 2057-2065
14. Martin, M. P., Dean, M., Smith, M. W., Winkler, C., Gerrard, B., Michael, N. L., Lee, B., Doms, R. W., Margolick, J., Buchbinder, S., Goedert, J. J., O'Brien, T. R., Hilgartner, M. W., Vlahov, D., O'Brien, S. J., and Carrington, M. (1998) Science 282, 1907-1911
15. Mummidi, S., Ahuja, S. S., Gonzalez, E., Anderson, S. A., Santiago, E. N., Stephan, K. T., Craig, F. E., O'Connell, P., Tryon, V., Clark, R. A., Dolan, M. J., and Ahuja, S. K. (1998) Nat. Med. 4, 786-793
16. Gonzalez, E., Bamshad, M., Sato, N., Mummidi, S., Dhanda, R., Catano, G., Cabrera, S., McBride, M., Cao, X. H., Merrill, G., O'Connell, P., Bowden, D. W., Freedman, B. I., Anderson, S. A., Walter, E. A., Evans, J. S., Stephan, K. T., Clark, R. A., Tyagi, S., Ahuja, S. S., Dolan, M. J., and Ahuja, S. K. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 12004-12009
17. McDermott, D. H., Zimmerman, P. A., Guignard, F., Kleeberger, C. A., Leitman, S. F., and Murphy, P. M. (1998) Lancet 352, 866-870
18. Norley, S., and Kurth, R. (1997) Springer Semin. Immunopathol. 18, 391-405
19. Overbaugh, J., Luciw, P. A., and Hoover, E. A. (1997) AIDS 11, 47-54
20. Mummidi, S., Ahuja, S. S., McDaniel, B. L., and Ahuja, S. K. (1997) J. Biol. Chem. 272, 30662-30671
21. Goodman, M. (1999) Am. J. Hum. Genet. 64, 31-39
22. Carrington, M., Dean, M., Martin, M. P., and O'Brien, S. J. (1999) Hum. Mol. Genet. 8, 1939-1945
23. Tolner, B., Roy, K., and Sirotnak, F. M. (1998) Gene (Amst.) 211, 331-341
24. Li, W., Streit, A., Roberteon, B., and Wood, W. B. (1999) Genetics 152, 237-248
25. Ausubel, F., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K. (1995) Short Protocols in Molecular Biology, 3rd Ed., John Wiley & Sons, Inc., New York
26. Schreiber, E., Matthias, P., Muller, M. M., and Schaftner, W. (1989) Nucleic Acids Res. 17, 6419
27. Jorde, L. B., Bamshad, M. J., Watkins, W. S., Zenger, R., Fraley, A. E., Krakowiak, P. A., Carpenter, K. D., Soodyall, H., Jenkins, T., and Rogers, A. R. (1995) Am. J. Hum. Genet. 57, 523-538
28. Saitou, N., and Nei, M. (1987) Mol. Biol. Evol. 4, 406-425
29. Nei, M., and Gojobori, T. (1986) Mol. Biol. Evol. 3, 418-426
30. Yang, Z. (1997) Comput. Appl. Biosci. 13, 555-556
31. Yang, Z., and Nielsen, R. (1998) J. Mol. Evol. 46, 409-418
32. Messier, W., and Stewart, C. B. (1997) Nature 385, 151-154
33. Zhang, Y. W., Ryder, O. A., and Zhang, Y. P. (1999) Mol. Biol. Evol. 16, 1145-1154
34. Carrington, M., Kissner, T., Gerrard, B., Ivanov, S., O'Brien, S. J., and Dean, M. (1997) Am. J. Hum. Genet. 61, 1261-1267
35. Goodman, M., Porter, C. A., Czelusniak, J., Page, S. L., Schneider, H., Shoshani, J., Gunnell, G., and Groves, C. P. (1998) Mol. Phylogenet Evol. 9, 585-598
36. Guignard, F., Combadiere, C., Tiffany, H. L., and Murphy, P. M. (1998) J. Immunol. 160, 985-992
37. Liu, R., Zhao, X., Gurney, T. A., and Landau, N. R. (1998) AIDS Res. Hum. Retroviruses 14, 1509-1519
38. Moriuchi, H., Moriuchi, M., and Fauci, A. S. (1997) J. Immunol. 159, 5441-5449
39. Grilli, M., Chiu, J. J., and Lenardo, M. J. (1993) Int. Rev. Cytol. 143, 1-62
40. Dean, M., Carrington, M., Winkler, C., Huttley, G. A., Smith, M. W., Allikmets, R., Goedert, J. J., Buchbinder, S. P., Vittinghoff, E., Gomperts, E., Donfield, S., Vlahov, D., Kaslow, R., Saah, A., Rinaldo, C., Detels, R., and O'Brien, S. J. (1996) Science 273, 1856-1862
41. Michael, N. L., Louie, L. G., Rohrbaugh, A. L., Schultz, K. A., Dayhoff, D. E., Wang, C. E., and Sheppard, H. W. (1997) Nat. Med. 3, 1160-1162
42. Michael, N. L., Chang, G., Louie, L. G., Mascola, J. R., Dondero, D., Birx, D. L., and Sheppard, H. W. (1997) Nat. Med. 3, 338-340
43. Kostrikis, L. G., Huang, Y., Moore, J. P., Wolinsky, S. M., Zhang, L., Guo, Y., Deutsch, L., Phair, J., Neumann, A. U., and Ho, D. D. (1998) Nat. Med. 4, 350-353
44. Huang, Y., Paxton, W. A., Wolinsky, S. M., Neumann, A. U., Zhang, L., He, T., Kang, S., Ceradini, D., Jin, Z., Yazdanbakhsh, K., Kunstman, K., Erickson, D., Dragon, E., Landau, N. R., Phair, J., Ho, D. D., and Koup, R. A. (1996) Nat. Med. 2, 1240-1243
45. Zimmerman, P. A., Buckler-White, A., Alkhatib, G., Spalding, T., Kubofcik, J., Combadiere, C., Weissman, D., Cohen, O., Rubbert, A., Lam, G., Vaccarezza, M., Kennedy, P. E., Kumaraswami, V., Giorgi, J. V., Detels, R., Hunter, J., Chopek, M., Berger, E. A., Fauci, A. S., Nutman, T. B., and Murphy, P. M. (1997) Mol. Med. 3, 23-36
46. Li, W., and Sadler, L. (1991) Genetics 129, 513-523
47. Dragic, T., Trkola, A., Lin, S. W., Nagashima, K. A., Kajumo, F., Zhao, L., Olson, W. C., Wu, L., Mackay, C. R., Allaway, G. P., Sakmar, T. P., Moore, J. P., and Maddon, P. J. (1998) J. Virol. 72, 279-285
48. Garzino-Demo, A., DeVico, A. L., and Gallo, R. C. (1998) J. Clin. Immunol. 18, 243-255
49. Knight, J. C., Udalova, I., Hill, A. V., Greenwood, B. M., Peshu, N., Marsh, K., and Kwiatkowski, D. (1999) Nat. Genet. 22, 145-150
50. Tournamille, C., Colin, Y., Cartron, J. P., and Le Van Kim, C. (1995) Nat. Genet. 10, 224-228
51. Kopp, E. B., and Ghosh, S. (1995) Adv. Immunol. 68, 1-27
52. Siebenlist, U., Franzoso, G., and Brown, K. (1994) Annu. Rev. Cell Biol. 10, 405-455
53. Baldwin, A. S., Jr. (1996) Annu. Rev. Immunol. 14, 649-683
54. Bream, J. H., Young, H. A., Rice, N., Martin, M. P., Smith, M. W., Carrington, M., and O'Brien, S. J. (1999) Science 284, 223
55. Lazarus, P. (1992) Oncogene 7, 1037-1041
56. Lee, Y. C., Chang, C. W., Su, C. W., Lin, T. N., Sun, S. H., Lai, H. L., and Chern, Y. (1999) J. Neurochem. 73, 1790-1798
57. Stefanovic, B., Hellerbrand, C., and Brenner, D. A. (1999) Mol. Cell. Biol. 19, 4334-4342
58. Boado, R. J., and Pardridge, W. M. (1997) Comp. Biochem. Physiol. B Camp. Biochem. Mol. Biol. 118, 309-312
59. Saini, K. S., Summerhayes, I. C., and Thomas, P. (1990) Mol. Cell. Biochem. 96, 15-23
60. Clemens, M. J. (1989) Curr. Opin. Cell Biol. 1, 1160-1167
61. Parkin, N., Darveau, A., Nicholson, R., and Sonenberg, N. (1988) Mol. Cell. Biol. 8, 2875-2883
62. Fomsgaard, A., Hirsch, V. M., Allan, J. S., and Johnson, P. R. (1991) Virology 182, 397-402
63. Allan, J. S., Short, M., Taylor, M. E., Su, S., Hirsch, V. M., Johnson, P. R., Shaw, G. M., and Hahn, B. H. (1991) J. Virol. 65, 2816-2828
64. Rey-Cuille, M. A., Berthier, J. L., Bomsel-Demontoy, M. C., Chaduc, Y., Montagnier, L., Hovanessian, A. G., and Chakrabarti, L. A. (1998) J. Virol. 72, 3872-3886
65. Edinger, A. L., Hoffman, T. L., Sharron, M., Lee, B., O'Dowd, B., and Doms, R. W. (1998) Virology 249, 367-378
66. Deng, H. K., Unutmaz, D., KewalRamani, V. N., and Littman, D. R. (1997) Nature 388, 296-300
67. Tang, J., Rivers, C., Karita, E., Cotello, C., Allen, S., Fulta, P. N., Schoenbaum, E. E., and Kaslow, R. A. (1999) Genes Immun. 1, 20-27