-
1
-
-
0032727868
-
The exosome: A proteasome for RNA?
-
van Hoof, A. & Parker, R. The exosome: a proteasome for RNA? Cell 99, 347-350 (1999).
-
(1999)
Cell
, vol.99
, pp. 347-350
-
-
Van Hoof, A.1
Parker, R.2
-
2
-
-
0035859046
-
Gene silencing as an adaptive defence against viruses
-
Waterhouse, P.M., Wang, M.B. & Lough, T. Gene silencing as an adaptive defence against viruses. Nature 411, 834-842 (2001).
-
(2001)
Nature
, vol.411
, pp. 834-842
-
-
Waterhouse, P.M.1
Wang, M.B.2
Lough, T.3
-
3
-
-
0032837376
-
Nonsense-mediated mRNA decay in health and disease
-
Frischmeyer, P.A. & Dietz, H.C. Nonsense-mediated mRNA decay in health and disease. Hum. Mol. Genet. 8, 1893-1900 (1999).
-
(1999)
Hum. Mol. Genet.
, vol.8
, pp. 1893-1900
-
-
Frischmeyer, P.A.1
Dietz, H.C.2
-
4
-
-
0033790503
-
Mechanisms and control of mRNA decapping in Saccharomyces cerevisiae
-
Tucker, M. & Parker, R. Mechanisms and control of mRNA decapping in Saccharomyces cerevisiae. Annu. Rev. Biochem. 69, 571-595 (2000).
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 571-595
-
-
Tucker, M.1
Parker, R.2
-
5
-
-
0026441426
-
Mutations affecting stability and deadenylation of the yeast MFA 2 transcript
-
Muhlrad, D. & Parker, R. Mutations affecting stability and deadenylation of the yeast MFA2 transcript. Genes Dev. 6, 2100-2111 (1992).
-
(1992)
Genes Dev.
, vol.6
, pp. 2100-2111
-
-
Muhlrad, D.1
Parker, R.2
-
6
-
-
0027320701
-
A turnover pathway for both stable and unstable mRNAs in yeast: Evidence for a requirement for deadenylation
-
Decker, C.J. & Parker, R. A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation. Genes Dev. 7, 1632-1643 (1993).
-
(1993)
Genes Dev.
, vol.7
, pp. 1632-1643
-
-
Decker, C.J.1
Parker, R.2
-
7
-
-
0027214097
-
Yeast cells lacking 5′→3′ exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′ cap structure
-
Hsu, C.L. & Stevens, A. Yeast cells lacking 5′→3′ exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′ cap structure. Mol. Cell. Biol. 13, 4826-4835 (1993).
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 4826-4835
-
-
Hsu, C.L.1
Stevens, A.2
-
8
-
-
0028202495
-
Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′→3′ digestion of the transcript
-
Muhlrad, D., Decker, C.J. & Parker, R. Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′→3′ digestion of the transcript. Genes Dev. 8, 855-866 (1994).
-
(1994)
Genes Dev.
, vol.8
, pp. 855-866
-
-
Muhlrad, D.1
Decker, C.J.2
Parker, R.3
-
9
-
-
0000577868
-
The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex
-
Jacobs-Anderson, J.S. & Parker, R. The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex. EMBO J. 17, 1497-1506 (1998).
-
(1998)
EMBO J.
, vol.17
, pp. 1497-1506
-
-
Jacobs-Anderson, J.S.1
Parker, R.2
-
10
-
-
18044371822
-
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
-
Chen, C.Y. et al. AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 107, 451-464 (2001).
-
(2001)
Cell
, vol.107
, pp. 451-464
-
-
Chen, C.Y.1
-
11
-
-
0035861864
-
Functional link between the mammalian exosome and mRNA decapping
-
Wang, Z. & Kiledjian, M. Functional link between the mammalian exosome and mRNA decapping. Cell 107, 751-762 (2001).
-
(2001)
Cell
, vol.107
, pp. 751-762
-
-
Wang, Z.1
Kiledjian, M.2
-
12
-
-
0037080834
-
The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements
-
Mukherjee, D. et al. The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements. EMBO J. 21, 165-174 (2002).
-
(2002)
EMBO J.
, vol.21
, pp. 165-174
-
-
Mukherjee, D.1
-
13
-
-
0037009517
-
The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases
-
Liu, H., Rodgers, N.D., Jiao, X. & Kiledjian, M. The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases. EMBO J. 21, 4699-4708 (2002).
-
(2002)
EMBO J.
, vol.21
, pp. 4699-4708
-
-
Liu, H.1
Rodgers, N.D.2
Jiao, X.3
Kiledjian, M.4
-
14
-
-
0027932513
-
Premature translation termination triggers mRNA decapping
-
Muhlrad, D., & Parker, R. Premature translation termination triggers mRNA decapping. Nature 370, 578-581 (1994).
-
(1994)
Nature
, vol.370
, pp. 578-581
-
-
Muhlrad, D.1
Parker, R.2
-
15
-
-
0028861358
-
Characterization of cis-acting sequences and decay intermediates involved in nonsense-mediated mRNA turnover
-
Hagan, K.W., Ruiz-Echevarria, M. J., Quan, Y. & Peltz, S.W. Characterization of cis-acting sequences and decay intermediates involved in nonsense-mediated mRNA turnover. Mol. Cell. Biol. 15, 809-823 (1995).
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 809-823
-
-
Hagan, K.W.1
Ruiz-Echevarria, M.J.2
Quan, Y.3
Peltz, S.W.4
-
16
-
-
0038402506
-
Computational modeling and experimental analysis of nonsense-mediated decay in yeast
-
Cao, D. & Parker, R. Computational modeling and experimental analysis of nonsense-mediated decay in yeast. Cell 113, 533-545 (2003).
-
(2003)
Cell
, vol.113
, pp. 533-545
-
-
Cao, D.1
Parker, R.2
-
17
-
-
0029758321
-
An essential component of the decapping enzyme required for normal rates of mRNA turnover
-
Beelman, C.A. et al. An essential component of the decapping enzyme required for normal rates of mRNA turnover. Nature 38, 642-646 (1996).
-
(1996)
Nature
, vol.38
, pp. 642-646
-
-
Beelman, C.A.1
-
18
-
-
0033214061
-
The Dcp 2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif
-
Dunckley, T. & Parker, R. The Dcp2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif. EMBO J. 18, 5411-5422 (1999).
-
(1999)
EMBO J.
, vol.18
, pp. 5411-5422
-
-
Dunckley, T.1
Parker, R.2
-
19
-
-
0035148534
-
Two related proteins, Edc1p and Edc2p, stimulate mRNA decapping in Saccharomyces cerevisiae
-
Dunckley, T., Tucker, M. & Parker, R. Two related proteins, Edc1p and Edc2p, stimulate mRNA decapping in Saccharomyces cerevisiae. Genetics 157, 27-37 (2001).
-
(2001)
Genetics
, vol.157
, pp. 27-37
-
-
Dunckley, T.1
Tucker, M.2
Parker, R.3
-
20
-
-
0036888905
-
Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay
-
Lykke-Andersen, J. Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay. Mol. Cell. Biol. 22, 8114-8121 (2002).
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 8114-8121
-
-
Lykke-Andersen, J.1
-
21
-
-
0037320851
-
Analysis of recombinant yeast decapping enzyme
-
Steiger, M., Carr-Schmid, A., Schwartz, D.C., Kiledjian, M. & Parker, R. Analysis of recombinant yeast decapping enzyme. RNA 9, 231-238 (2003).
-
(2003)
RNA
, vol.9
, pp. 231-238
-
-
Steiger, M.1
Carr-Schmid, A.2
Schwartz, D.C.3
Kiledjian, M.4
Parker, R.5
-
22
-
-
0037121926
-
Human Dcp2: A catalytically active mRNA decapping enzyme located in specific cytoplasmic structures
-
van Dijk, E. et al. Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures. EMBO J. 21, 6915-6924 (2002).
-
(2002)
EMBO J.
, vol.21
, pp. 6915-6924
-
-
Van Dijk, E.1
-
23
-
-
0036792078
-
The hDcp 2 protein is a mammalian mRNA decapping enzyme
-
Wang, Z., Jiao, X., Carr-Schmid, A. & Kiledjian, M. The hDcp2 protein is a mammalian mRNA decapping enzyme. Proc. Natl. Acad. Sci. USA 99, 12663-12668 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12663-12668
-
-
Wang, Z.1
Jiao, X.2
Carr-Schmid, A.3
Kiledjian, M.4
-
24
-
-
0027522193
-
A highly conserved sequence motif defining the family of MutT-related proteins from eubacteria, eukaryotes and viruses
-
Koonin, E.V. A highly conserved sequence motif defining the family of MutT-related proteins from eubacteria, eukaryotes and viruses. Nucleic Acids Res. 21, 4847 (1993).
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4847
-
-
Koonin, E.V.1
-
25
-
-
0029835350
-
The MutT proteins or 'Nudix' hydrolases, a family of versatile, widely distributed, 'house cleaning' enzyme
-
Bessman, M.J., Frick, D.N. & O'Handley, S.F. The MutT proteins or 'Nudix' hydrolases, a family of versatile, widely distributed, 'house cleaning' enzyme. J. Biol. Chem. 271, 25059-25062 (1996).
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 25059-25062
-
-
Bessman, M.J.1
Frick, D.N.2
O'Handley, S.F.3
-
26
-
-
0034663782
-
The eukaryotic mRNA decapping protein Dcp 1 interacts physically and functionally with the eIF4F translation initiation complex
-
Vilela, C., Velasco, C., Ptushkina, M. & McCarthy, J.E. The eukaryotic mRNA decapping protein Dcp1 interacts physically and functionally with the eIF4F translation initiation complex. EMBO J. 19, 4372-4382 (2000).
-
(2000)
EMBO J.
, vol.19
, pp. 4372-4382
-
-
Vilela, C.1
Velasco, C.2
Ptushkina, M.3
McCarthy, J.E.4
-
27
-
-
0036119191
-
SMIF, a Smad4-interacting protein that functions as a co-activator in TGFβ signalling
-
Bai, R.Y. et al. SMIF, a Smad4-interacting protein that functions as a co-activator in TGFβ signalling. Nat. Cell Biol. 4, 181-190 (2002).
-
(2002)
Nat. Cell Biol.
, vol.4
, pp. 181-190
-
-
Bai, R.Y.1
-
28
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L. & Sander, C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233, 123-138 (1993).
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
29
-
-
0033553508
-
Structure of the enabled(VASP homology 1 domain-peptide complex: A key component in the spatial control of actin assembly
-
Prehoda, K.E., Lee, D.J. & Lim, W.A. Structure of the enabled(VASP homology 1 domain-peptide complex: a key component in the spatial control of actin assembly. Cell 97, 471-480 (1999).
-
(1999)
Cell
, vol.97
, pp. 471-480
-
-
Prehoda, K.E.1
Lee, D.J.2
Lim, W.A.3
-
30
-
-
0033522118
-
Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: Implications for nuclear transport
-
Vetter, I.R., Nowak, C., Nishimoto, T., Kuhlmann, J. & Wittinghofer, A. Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: implications for nuclear transport. Nature 398, 39-46 (1999).
-
(1999)
Nature
, vol.398
, pp. 39-46
-
-
Vetter, I.R.1
Nowak, C.2
Nishimoto, T.3
Kuhlmann, J.4
Wittinghofer, A.5
-
31
-
-
0033679292
-
Structure of the Homer EVH1 domain-peptide complex reveals a new twist in polyproline recognition
-
Beneken, J. et al. Structure of the Homer EVH1 domain-peptide complex reveals a new twist in polyproline recognition. Neuron 26, 143-154 (2000).
-
(2000)
Neuron
, vol.26
, pp. 143-154
-
-
Beneken, J.1
-
32
-
-
0037112347
-
Structure of the N-WASP EVH1 domain-WIP complex: Insight into the molecular basis of Wiskott-Aldrich syndrome
-
Volkman, B.F., Prehoda, K.E., Scott, J.A., Peterson, F.C. & Lim, W.A. Structure of the N-WASP EVH1 domain-WIP complex: insight into the molecular basis of Wiskott-Aldrich syndrome. Cell 111, 565-576 (2002).
-
(2002)
Cell
, vol.111
, pp. 565-576
-
-
Volkman, B.F.1
Prehoda, K.E.2
Scott, J.A.3
Peterson, F.C.4
Lim, W.A.5
-
33
-
-
0037157144
-
An EVH1/WH1 domain as a key actor in TGFβ signalling
-
Callebaut, I. An EVH1/WH1 domain as a key actor in TGFβ signalling. FEBS Lett. 519, 178-180 (2002).
-
(2002)
FEBS Lett.
, vol.519
, pp. 178-180
-
-
Callebaut, I.1
-
34
-
-
0032940545
-
Analysis of mutations in the yeast mRNA decapping enzyme
-
Tharun, S. & Parker, R. Analysis of mutations in the yeast mRNA decapping enzyme. Genetics 151, 1273-1285 (1999).
-
(1999)
Genetics
, vol.151
, pp. 1273-1285
-
-
Tharun, S.1
Parker, R.2
-
35
-
-
0036469131
-
Doing (F/L) PPs: EVH1 domains and their proline-rich partners in cell polarity and migration
-
Renfranz, P.J. & Beckerle, M.C. Doing (F/L) PPs: EVH1 domains and their proline-rich partners in cell polarity and migration. Curr. Opin. Cell Biol. 14, 88-103 (2002).
-
(2002)
Curr. Opin. Cell Biol.
, vol.14
, pp. 88-103
-
-
Renfranz, P.J.1
Beckerle, M.C.2
-
36
-
-
1642343366
-
Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae
-
in the press
-
Kshirsagar, M. & Parker, R. Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae. Genetics (in the press).
-
Genetics
-
-
Kshirsagar, M.1
Parker, R.2
-
37
-
-
0035674477
-
The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes
-
Coller, J.M., Tucker, M., Sheth, U., Valencia-Sanchez, M.A. & Parker, R. The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. RNA 7, 1717-1727 (2001).
-
(2001)
RNA
, vol.7
, pp. 1717-1727
-
-
Coller, J.M.1
Tucker, M.2
Sheth, U.3
Valencia-Sanchez, M.A.4
Parker, R.5
-
38
-
-
0037013898
-
The DEAD box protein Dhh 1 stimulates the decapping enzyme Dcp1
-
Fischer, N. & Weis, K. The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1. EMBO J. 21, 2788-2797 (2002).
-
(2002)
EMBO J.
, vol.21
, pp. 2788-2797
-
-
Fischer, N.1
Weis, K.2
-
39
-
-
0034665266
-
Dual epitope recognition by the VASP EVH 1 domain modulates polyproline ligand specificity and binding affinity
-
Ball, L.J. et al. Dual epitope recognition by the VASP EVH1 domain modulates polyproline ligand specificity and binding affinity. EMBO J. 19, 4903-4914 (2000).
-
(2000)
EMBO J.
, vol.19
, pp. 4903-4914
-
-
Ball, L.J.1
-
40
-
-
0037138362
-
EVH1 domains: Structure, function and interactions
-
Ball, L.J., Jarchau, T., Oschkinat. H. & Walter, U. EVH1 domains: structure, function and interactions. FEBS letter, 513, 45-52 (2002).
-
(2002)
FEBS Letter
, vol.513
, pp. 45-52
-
-
Ball, L.J.1
Jarchau, T.2
Oschkinat, H.3
Walter, U.4
-
41
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
42
-
-
0004108878
-
-
(ed. Fortier, S.) (Kluwer Academic, Dordrecht, The Netherlands)
-
Sheldrick, G.M. In Direct Methods for Solving Macromolecular Structures. (ed. Fortier, S.) 401-411 (Kluwer Academic, Dordrecht, The Netherlands, 1998).
-
(1998)
Direct Methods for Solving Macromolecular Structures
, pp. 401-411
-
-
Sheldrick, G.M.1
-
43
-
-
0031058188
-
Maximum-likelihood heavy-atom parameters refinement in the MIR and MAD methods
-
de la Fortelle, E. & Bricogne, G. Maximum-likelihood heavy-atom parameters refinement in the MIR and MAD methods. Methods Enzymol. 276, 472-494 (1997).
-
(1997)
Methods Enzymol.
, vol.276
, pp. 472-494
-
-
De La Fortelle, E.1
Bricogne, G.2
-
44
-
-
0030855279
-
Bias reduction in phase refinement by modified interference functions: Introducing the γ correction
-
Abrahams, J.P. Bias reduction in phase refinement by modified interference functions: introducing the γ correction. Acta Crystallogr. D 53, 43-48 (1997).
-
(1997)
Acta Crystallogr. D
, vol.53
, pp. 43-48
-
-
Abrahams, J.P.1
-
45
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110-119 (1991).
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
46
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macro-molecular structure determination
-
Brünger, A.T. et al. Crystallography and NMR system: a new software suite for macro-molecular structure determination. Acta Crystallogr. D 54, 905-921 (1998).
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
-
47
-
-
0032473359
-
Isolation and characterization of Dcp1p, the yeast mRNA decapping enzyme
-
LaGrandeur, T.E. & Parker, R. Isolation and characterization of Dcp1p, the yeast mRNA decapping enzyme. EMBO J. 17, 1487-1496 (1998).
-
(1998)
EMBO J.
, vol.17
, pp. 1487-1496
-
-
LaGrandeur, T.E.1
Parker, R.2
-
48
-
-
0026244229
-
MOLSCRIPT a program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. App. Crystallogr. 24, 946-950 (1991).
-
(1991)
J. App. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
49
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G. & Gibson, T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 (1994).
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
50
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls, A., Sharp, K.A. & Honig, B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11, 281-296 (1991).
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
|