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Volumn 31, Issue 9, 2003, Pages 2434-2442

Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes

Author keywords

[No Author keywords available]

Indexed keywords

GLUTAMINE; METHIONINE; POLYURIDYLIC ACID; SPACER DNA; TRANSFER RNA; HYDROXYL RADICAL; RNA;

EID: 0038750886     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg336     Document Type: Article
Times cited : (86)

References (37)
  • 1
    • 0023720048 scopus 로고
    • Internal initiation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA
    • Pelletier,J. and Sonenberg,N. (1988) Internal initiation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA. Nature, 334, 320-325.
    • (1988) Nature , vol.334 , pp. 320-325
    • Pelletier, J.1    Sonenberg, N.2
  • 2
    • 0023758546 scopus 로고
    • A segment of the 5′ nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation
    • Jang,S.K., Krausslich,H.G., Nicklin,M.J.H., Duke,G.M., Palmenberg,A.C. and Wimmer,E. (1988) A segment of the 5′ nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation. J. Virol., 62, 2636-2643.
    • (1988) J. Virol. , vol.62 , pp. 2636-2643
    • Jang, S.K.1    Krausslich, H.G.2    Nicklin, M.J.H.3    Duke, G.M.4    Palmenberg, A.C.5    Wimmer, E.6
  • 3
    • 0035396727 scopus 로고    scopus 로고
    • Internal ribosome entry sites in eukaryotic mRNA molecules
    • Hellen,C.U.T. and Sarnow,P. (2001) Internal ribosome entry sites in eukaryotic mRNA molecules. Genes Dev., 15, 1593-1612.
    • (2001) Genes Dev. , vol.15 , pp. 1593-1612
    • Hellen, C.U.T.1    Sarnow, P.2
  • 4
    • 0034764497 scopus 로고    scopus 로고
    • Irresistible IRES. Attracting the translation machinery to internal ribosome entry sites
    • Vagner,S., Galy,B. and Pyronnet,S. (2001) Irresistible IRES. Attracting the translation machinery to internal ribosome entry sites. EMBO Rep., 2, 893-898.
    • (2001) EMBO Rep. , vol.2 , pp. 893-898
    • Vagner, S.1    Galy, B.2    Pyronnet, S.3
  • 5
    • 0032927056 scopus 로고    scopus 로고
    • Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro
    • Sasaki,J. and Nakashima,N. (1999) Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro. J. Virol., 73, 1219-1226.
    • (1999) J. Virol. , vol.73 , pp. 1219-1226
    • Sasaki, J.1    Nakashima, N.2
  • 6
    • 0033920258 scopus 로고    scopus 로고
    • Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites
    • Wilson,J.E., Powell,M.J., Hoover,S.E. and Sarnow,P. (2000) Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites. Mol. Cell. Biol., 20, 4990-4999.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 4990-4999
    • Wilson, J.E.1    Powell, M.J.2    Hoover, S.E.3    Sarnow, P.4
  • 7
    • 0036007485 scopus 로고    scopus 로고
    • Evolutionary and taxonomic implications of conserved structural motifs between picornaviruses and insect picorna-like viruses
    • Liljas,L., Tate,J., Lin,T., Christian,P. and Johnson,J.E. (2002) Evolutionary and taxonomic implications of conserved structural motifs between picornaviruses and insect picorna-like viruses. Arch. Virol., 147, 59-84.
    • (2002) Arch. Virol. , vol.147 , pp. 59-84
    • Liljas, L.1    Tate, J.2    Lin, T.3    Christian, P.4    Johnson, J.E.5
  • 8
    • 0034652349 scopus 로고    scopus 로고
    • Methionine-independent initiation of translation in the capsid protein of an insect RNA virus
    • Sasaki,J. and Nakashima,N. (2000) Methionine-independent initiation of translation in the capsid protein of an insect RNA virus. Proc. Natl Acad. Sci. USA, 97, 1512-1515.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1512-1515
    • Sasaki, J.1    Nakashima, N.2
  • 9
    • 0034682720 scopus 로고    scopus 로고
    • Initiation of protein synthesis from the A site of the ribosome
    • Wilson,J.E., Pestova,T.V., Hellen,C.U. and Sarnow,P. (2000) Initiation of protein synthesis from the A site of the ribosome. Cell, 102, 511-520.
    • (2000) Cell , vol.102 , pp. 511-520
    • Wilson, J.E.1    Pestova, T.V.2    Hellen, C.U.3    Sarnow, P.4
  • 10
    • 0001688296 scopus 로고    scopus 로고
    • A comparative view of initiation site selection mechanisms
    • Sonenberg,N., Hershey,J.W.B. and Mathews,M.B. (eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Jackson,R.J. (2000) A comparative view of initiation site selection mechanisms. In Sonenberg,N., Hershey,J.W.B. and Mathews,M.B. (eds), Translational Control of Gene Expression. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 127-183.
    • (2000) Translational Control of Gene Expression , pp. 127-183
    • Jackson, R.J.1
  • 11
    • 0036208405 scopus 로고    scopus 로고
    • Shrimp Taura syndrome virus: Genomic characterization and similarity with members of the genus Cricket paralysis-like viruses
    • Mari,J., Poulos,B.T., Lightner,D.V. and Bonami,J.R. (2002) Shrimp Taura syndrome virus: genomic characterization and similarity with members of the genus Cricket paralysis-like viruses. J. Gen. Virol., 83, 915-926.
    • (2002) J. Gen. Virol. , vol.83 , pp. 915-926
    • Mari, J.1    Poulos, B.T.2    Lightner, D.V.3    Bonami, J.R.4
  • 12
    • 0036940601 scopus 로고    scopus 로고
    • Sequence analysis and genomic organization of Aphid lethal paralysis virus: A new member of the family Dicistroviridae
    • van Munster,M., Dullemans,A.M., Verbeek,M., van den Heuvel,J.F., Clerivet,A. and van der Wilk,F. (2002) Sequence analysis and genomic organization of Aphid lethal paralysis virus: a new member of the family Dicistroviridae. J. Gen. Virol., 83, 3131-3138.
    • (2002) J. Gen. Virol. , vol.83 , pp. 3131-3138
    • van Munster, M.1    Dullemans, A.M.2    Verbeek, M.3    van den Heuvel, J.F.4    Clerivet, A.5    van der Wilk, F.6
  • 13
    • 0035259873 scopus 로고    scopus 로고
    • A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation
    • Kanamori,Y. and Nakashima,N. (2001) A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation. RNA, 7, 266-274.
    • (2001) RNA , vol.7 , pp. 266-274
    • Kanamori, Y.1    Nakashima, N.2
  • 14
    • 0035818467 scopus 로고    scopus 로고
    • Internal initiation in Saccharomyces cerevisae mediated by an initiator tRNA/eIF2-independent internal ribosome entry site element
    • Thompson,S.R., Gulyas,K.D. and Sarnow,P. (2001) Internal initiation in Saccharomyces cerevisae mediated by an initiator tRNA/eIF2-independent internal ribosome entry site element. Proc. Natl Acad Sci. USA, 98, 12972-12977.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 12972-12977
    • Thompson, S.R.1    Gulyas, K.D.2    Sarnow, P.3
  • 15
    • 0037166289 scopus 로고    scopus 로고
    • Regulation of internal ribosomal entry site-mediated translation by phosphorylation of the translation initiation factor eIF2α
    • Fernandez,J., Yaman,I., Sarnow,P., Snider,M.D. and Hatzoglou,M. (2002) Regulation of internal ribosomal entry site-mediated translation by phosphorylation of the translation initiation factor eIF2α. J. Biol. Chem., 277, 19198-19205.
    • (2002) J. Biol. Chem. , vol.277 , pp. 19198-19205
    • Fernandez, J.1    Yaman, I.2    Sarnow, P.3    Snider, M.D.4    Hatzoglou, M.5
  • 16
    • 0036321944 scopus 로고    scopus 로고
    • Hijacking the translation apparatus by RNA viruses
    • Bushell,M. and Sarnow,P. (2002) Hijacking the translation apparatus by RNA viruses. J. Cell Biol., 158, 395-399.
    • (2002) J. Cell Biol. , vol.158 , pp. 395-399
    • Bushell, M.1    Sarnow, P.2
  • 17
    • 0034634592 scopus 로고    scopus 로고
    • A covariant change of the two highly conserved bases in the GTPase-associated center of 28 S rRNA in silkworms and other moths
    • Uchiumi,T., Nomura,T., Shimizu,T., Katakai,Y., Mita,K., Koike,Y., Nakagaki,M., Taira,H. and Hachimori,A. (2000) A covariant change of the two highly conserved bases in the GTPase-associated center of 28 S rRNA in silkworms and other moths. J. Biol. Chem., 275, 35116-35121.
    • (2000) J. Biol. Chem. , vol.275 , pp. 35116-35121
    • Uchiumi, T.1    Nomura, T.2    Shimizu, T.3    Katakai, Y.4    Mita, K.5    Koike, Y.6    Nakagaki, M.7    Taira, H.8    Hachimori, A.9
  • 18
    • 0015009391 scopus 로고
    • Dissociation of mammalian polyribosomes into subunits by puromycin
    • Blobel,G. and Sabatini,D. (1971) Dissociation of mammalian polyribosomes into subunits by puromycin. Proc. Natl Acad. Sci. USA, 68, 390-394.
    • (1971) Proc. Natl. Acad. Sci. USA , vol.68 , pp. 390-394
    • Blobel, G.1    Sabatini, D.2
  • 19
    • 0029956389 scopus 로고    scopus 로고
    • Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry
    • Pestova,T.V., Hellen,C.U.T. and Shatsky,I.N. (1996) Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry. Mol. Cell. Biol., 16, 6859-6869.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 6859-6869
    • Pestova, T.V.1    Hellen, C.U.T.2    Shatsky, I.N.3
  • 20
    • 0033534470 scopus 로고    scopus 로고
    • Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6
    • Uchiumi,T., Sato,N., Wada,A. and Hachimori,A. (1999) Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6. J. Biol. Chem., 274, 681-686.
    • (1999) J. Biol. Chem. , vol.274 , pp. 681-686
    • Uchiumi, T.1    Sato, N.2    Wada, A.3    Hachimori, A.4
  • 21
    • 0018401685 scopus 로고
    • Polypeptide chain elongation factors from pig liver
    • Iwasaki,K. and Kaziro,Y. (1979) Polypeptide chain elongation factors from pig liver. Methods Enzymol., 60, 657-676.
    • (1979) Methods Enzymol. , vol.60 , pp. 657-676
    • Iwasaki, K.1    Kaziro, Y.2
  • 22
    • 0025771080 scopus 로고
    • Three-dimensional model of Escherichia coli ribosomal 5 S RNA as deduced from structure probing in solution and computer modeling
    • Brunel,C., Romby,P., Westhof,E., Ehresmann,C. and Ehresmann,B. (1991) Three-dimensional model of Escherichia coli ribosomal 5 S RNA as deduced from structure probing in solution and computer modeling. J. Mol. Biol., 221, 293-308.
    • (1991) J. Mol. Biol. , vol.221 , pp. 293-308
    • Brunel, C.1    Romby, P.2    Westhof, E.3    Ehresmann, C.4    Ehresmann, B.5
  • 23
    • 0033600934 scopus 로고    scopus 로고
    • The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold
    • Kieft,J.S., Zhou,K., Jubin,R., Murray,M.G., Lau,J.Y. and Doudna,J.A. (1999) The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold. J. Mol. Biol., 292, 513-529.
    • (1999) J. Mol. Biol. , vol.292 , pp. 513-529
    • Kieft, J.S.1    Zhou, K.2    Jubin, R.3    Murray, M.G.4    Lau, J.Y.5    Doudna, J.A.6
  • 25
    • 0003098935 scopus 로고    scopus 로고
    • Footprinting and modification-interference analysis of binding sites on RNA
    • Smith,C.W.J. (ed.), Oxford University Press, Oxford, UK
    • Merryman,C. and Noller,H.F. (1998) Footprinting and modification-interference analysis of binding sites on RNA. In Smith,C.W.J. (ed.), RNA:Protein Interactions. Oxford University Press, Oxford, UK, pp. 237-253.
    • (1998) RNA:Protein Interactions , pp. 237-253
    • Merryman, C.1    Noller, H.F.2
  • 26
    • 0037073485 scopus 로고    scopus 로고
    • Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus
    • Jan,E. and Sarnow,P. (2002) Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus. J. Mol. Biol., 324, 889-902.
    • (2002) J. Mol. Biol. , vol.324 , pp. 889-902
    • Jan, E.1    Sarnow, P.2
  • 27
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews,D.H., Sabina,J., Zuker,M. and Turner,D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 28
    • 0021991295 scopus 로고
    • Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: A technique for RNA structure analysis using chemical probes and reverse transcriptase
    • Inoue,T. and Cech,T.R. (1985) Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: a technique for RNA structure analysis using chemical probes and reverse transcriptase. Proc. Natl Acad. Sci. USA, 82, 648-652.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 648-652
    • Inoue, T.1    Cech, T.R.2
  • 29
    • 0022916242 scopus 로고
    • Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes
    • Moazed,D. and Noller,H.F. (1986) Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes. Cell, 47, 985-994.
    • (1986) Cell , vol.47 , pp. 985-994
    • Moazed, D.1    Noller, H.F.2
  • 30
    • 0034653937 scopus 로고    scopus 로고
    • Sequence requirements for translation initiation of Rhopalosiphum padi virus ORF2
    • Domier,L.L., McCoppin,N.K. and D'Arcy,C.J. (2000) Sequence requirements for translation initiation of Rhopalosiphum padi virus ORF2. Virology, 268, 264-271.
    • (2000) Virology , vol.268 , pp. 264-271
    • Domier, L.L.1    McCoppin, N.K.2    D'Arcy, C.J.3
  • 31
    • 0024359787 scopus 로고
    • Defining the inside and outside of a catalytic RNA molecule
    • Latham,J.A. and Cech,T.R. (1989) Defining the inside and outside of a catalytic RNA molecule. Science, 245, 276-282.
    • (1989) Science , vol.245 , pp. 276-282
    • Latham, J.A.1    Cech, T.R.2
  • 32
    • 0025787783 scopus 로고
    • The use of chemical nucleases to analyze RNA-protein interactions. The TFIIIA-5 S rRNA complex
    • Darsillo,P. and Huber,P.W. (1991) The use of chemical nucleases to analyze RNA-protein interactions. The TFIIIA-5 S rRNA complex. J. Biol. Chem., 266, 21075-21082.
    • (1991) J. Biol. Chem. , vol.266 , pp. 21075-21082
    • Darsillo, P.1    Huber, P.W.2
  • 34
    • 0024334898 scopus 로고
    • Interaction of tRNA with 23S rRNA in the ribosomal A, P and E sites
    • Moazed,D. and Noller,H.F. (1989) Interaction of tRNA with 23S rRNA in the ribosomal A, P and E sites. Cell, 57, 585-597.
    • (1989) Cell , vol.57 , pp. 585-597
    • Moazed, D.1    Noller, H.F.2
  • 35
    • 0030657775 scopus 로고    scopus 로고
    • Mapping the inside of the ribosome with an RNA helical ruler
    • Joseph,S., Weiser,B. and Noller,H.F. (1997) Mapping the inside of the ribosome with an RNA helical ruler. Science, 278, 1093-1098.
    • (1997) Science , vol.278 , pp. 1093-1098
    • Joseph, S.1    Weiser, B.2    Noller, H.F.3
  • 37
    • 0037439060 scopus 로고    scopus 로고
    • Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA
    • Pestova,T.V. and Hellen,C.U.T. (2003) Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA. Genes Dev., 17, 181-186.
    • (2003) Genes Dev. , vol.17 , pp. 181-186
    • Pestova, T.V.1    Hellen, C.U.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.