Design of a calcium-binding protein with desired structure in a cell adhesion molecule

Journal of the American Chemical Society

Volumn 127, Issue 7, 2005, Pages 2085-2093

  Yang, Wei ^a   Wilkins, Anna L ^a   Ye, Yiming ^a   Liu, Zhi Ren ^a   Li, Shun Yi ^a   Urbauer, Jeffrey L ^b   Hellinga, Homme W ^c   Kearney, Alice ^d   Van Der Merwe, P Anton ^d   Yang, Jenny J ^a  

^a GEORGIA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

^c DUKE UNIVERSITY   (United States)

^d UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ADHESION; CALCIUM; CELLS; MOLECULAR STRUCTURE; SIGNALING;

ADHESION PROTEINS; CALCIUM-BINDING PROTEINS; CELLULAR PROCESS; LIGANDS;

PROTEINS;

CALCIUM BINDING PROTEIN; CALCIUM ION; CELL ADHESION MOLECULE; NON CALCIUM BINDING CELL ADHESION PROTEIN CD2; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; CALCIUM BINDING; CALCIUM SIGNALING; CELL ADHESION; CONFORMATIONAL TRANSITION; METAL BINDING; PROTEIN ENGINEERING; PROTEIN FUNCTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

ANIMALS; ANTIGENS, CD2; BINDING SITES; CALCIUM; CALCIUM-BINDING PROTEINS; CELL ADHESION MOLECULES; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN ENGINEERING; PROTEIN STRUCTURE, TERTIARY; RATS; SPECTROMETRY, FLUORESCENCE; SURFACE PLASMON RESONANCE; TERBIUM;

EID: 13944273682     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0431307     Document Type: Article

References (36)

1. Berridge, M. J.; Boolman, M. D.; Lipp, P. Nature 1998, 395, 645-648.
2. Glusker, J. P. Adv. Protein Chem. 1991, 42, 1-76.
3. Brown, E. M.; Macleod, R. J. Physiol. Rev. 2001, 81, 239-297.
4. Shapiro, L.; Colman, D. R. Curr. Opin. Neurobiol. 1998, 8, 593-599.
5. Kawasaki, H.; Kretsinger, R. H. Protein Profile 1995, 2, 297-490.
6. Nelson, M. R.; Chazin, W. J. Biometals 1998, 11, 297-318.
7. Nagar, B.; Overduin, M.; Ikura, M.; Rini, J. M. Nature 1996, 380, 360-365.
8. Yang, W.; Jones, L. M.; Isley, L.; Ye, Y.; Lee, H. W.; Wilkins, A.; Liu, Z. R.; Hellinga, H. W.; Malchow, R.; Ghazi, M.; Yang, J. J. J. Am. Chem. Soc. 2003, 125, 6165-6171.
9. Pidcock, E.; Moore, G. R. J. Biol. Inorg. Chem. 2001, 6, 479-489.
10. Vans, W.; Lee, H. W.; Hellinga, H.; Yang, J. J. Proteins 2002, 47, 344-356.
11. Kuroki, R.; Taniyama, Y.; Seko, C.; Nakamura, H.; Kikuchi, M.; Ikehara, M. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 6903-6907.
12. Toma, S.; Campagnoli, S.; Margarin, I.; Gianna, R.; Grandi, G.; Bolognesi, M.; De Filippis, V.; Fontana, A. Biochemistry 1991, 30, 97-106.
13. Wilkins, A. L.; Ye, Y.; Yang, W.; Lee, H. W.; Liu, Z. R.; Yang, J. J. Protein Eng. 2002, 15, 571-574.
14. Davis, S. J.; Davies, E. A.; Tucknott, M. G.; Jones, B. Y.; van der Merwe, P. A. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 5490-5494.
15. Leahy, D. J. Annu. Rev. Cell Dev. Biol. 1997, 13, 363-393.
16. Wang, J. H.; Smolyar, A.; Tan, K.; Liu, J. H.; Kim, M.; Sun, Z. Y.; Wagner, G.; Reinherz, E. L. Cell 1999, 97, 791-803.
17. Driscoll, P. C.; Cyster, J. G.; Campbell, I. D.; Williams, A. F. Nature 1991, 353, 762-765,
18. Jones, E. Y.; Davis, S. J.; Williams, A. F.; Harlos, K.; Smart, D. I. Nature 1992, 360, 232-239.
19. Wagner, G.; Wyss, D. F. Curr. Opin. Struct. Biol. 1994, 4, 841-851.
20. Hellinga, H. W.; Richards, F. M. J. Mol. Biol. 1991, 222, 763-785.
21. Parker, M. J.; Dempsey, C. E.; Hosszu, L. L.; Waltho, J. P.; Clarke, A. R. Nat. Struct. Biol. 1998, 5, 194-198.
22. Dahiyat, B. I.; Mayo, S. L. Science 1997, 278, 82-87.
23. Ubach, J.; Zhang, X.; Shao, X.; Sudhof, T. C.; Rizo, J. EMBO J. 1998, 17, 3921-3930.
24. Horrocks, W. D., Jr. Adv. Inorg. Biochem. 1982, 4, 201-261.
25. Brunger, A. T.; Adams, P. D.; Clore, G. M.; DeLano, W. L.; Gros, P.; Grosse-Kunstleve, R. W.; Jiang, J. S.; Kuszewski, J.; Nilges, M.; Pannu, N. S.; Read, R. J.; Rice, L. M.; Simonson, T.; Warren, G. L. Acta Crystallogr. D 1998, 54, 905-921.
26. Laskowski, R. A.; Rullmannn, J. A.; MacArthur, M. W.; Kaptein, R.; Thornton, J. M. J. Biomol. NMR 1996, 8, 477-486.
27. Willard, L.; Ranjan, A.; Zhang, H.; Monzavi, H.; Boyko, R. F.; Sykes, B. D.; Wishart, D. S. Nucleic Acids Res. 2003, 31, 3316-3319.
28. Mildvan, A. S.; Cohn, M. Adv. Enzymol. Relat. Areas Mol. Biol. 1970, 33, 1-70.
29. McAlister, M. S.; Mott, H. R.; van der Merwe, P. A.; Campbell, I. D.; Davis, S. J.; Driscoll, P. C. Biochemistry 1996, 35, 5982-5991.
30. Barbieri, R.; Bertini, I.; Cavallaro, G.; Lee, Y. M.; Luchinat, C.; Rosato, A. J. Am. Chem. Soc. 2002, 124, 5581-5587.
31. DeGrado, W. F.; Summa, C. M.; Pavone, V.; Nastri, F.; Lombardi, A. Annu. Rev. Biochem. 1999, 68, 779-819.
32. Looger, L. L.; Dwyer, M. A.; Smith, J. J.; Hellinga, H. W. Nature 2003, 423, 185-190.
33. Kuhlman, B.; Dantas, G.; Ireton, G. C.; Varani, G.; Stoddard, B. L.; Baker, D. Science 2003, 302, 1364-1368.
34. Oliynyk, Z.; Briseno-Roa, L.; Janowitz, T.; Sondergeld, P.; Fersht, A. R. Protein Eng. Des. Sel. 2004, 17, 383-390.
35. Koradi, R.; Billeter, M.; Wuthrich, K. J. Mol. Graph. 1996, 14, 51-55.
36. Kraulis, P. J. J. Appl. Cryst. 1991, 24, 946-950.