RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in Trypanosoma brucei

Journal of Biological Chemistry

Volumn 280, Issue 4, 2005, Pages 2429-2438

  Vondrušková, Eva ^a   Van Den Burg, Janny ^b   Zíková, Alena ^a   Ernst, Nancy Lewis ^c   Stuart, Kenneth ^c   Benne, Rob ^b   Lukeš, Julius ^a,d  

^a UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

^b UNIVERSITY OF AMSTERDAM   (Netherlands)

^c UNIVERSITY OF WASHINGTON   (United States)

^d INSTITUTE OF PARASITOLOGY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; ENZYME INHIBITION; RNA;

GROWTH INHIBITION; MITOCHONDRIA; RNA-BINDING PROTEINS; TRYPANOSOMES;

PROTEINS;

CYCLOOXYGENASE 1; CYCLOOXYGENASE 2; CYCLOOXYGENASE 3; MITOCHONDRIAL RNA; MITOCHONDRIAL RNA BINDING PROTEIN 1; MITOCHONDRIAL RNA BINDING PROTEIN 2; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; RIBOSOME RNA; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; ELIMINATION REACTION; GENE DELETION; GENE INSERTION; GROWTH INHIBITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEPLETION; PROTEIN EXPRESSION; PROTEIN RNA BINDING; PROTEIN STABILITY; RNA BINDING; RNA EDITING; RNA INTERFERENCE; RNA METABOLISM; RNA PROCESSING; TRANSCRIPTION REGULATION; TRYPANOSOMA BRUCEI;

ANIMALS; BLOTTING, NORTHERN; BLOTTING, SOUTHERN; BLOTTING, WESTERN; CLONING, MOLECULAR; DNA PRIMERS; GLYCEROL; IMMUNOPRECIPITATION; MITOCHONDRIAL PROTEINS; PLASMIDS; PROTEIN BINDING; PROTOZOAN PROTEINS; RNA; RNA EDITING; RNA INTERFERENCE; RNA, MESSENGER; RNA, PROTOZOAN; RNA, RIBOSOMAL; RNA-BINDING PROTEINS; TIME FACTORS; TRANSFECTION; TRYPANOSOMA BRUCEI BRUCEI;

PROTOZOA; TRYPANOSOMA; TRYPANOSOMA BRUCEI;

EID: 13244257143     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M405933200     Document Type: Article

References (49)

1. Lukeš, J., Guilbride, D. L., Votýpka, J., Zíková, A., Benne, R., and Englund, P. T. (2002) Eukaryot. Cell 1, 495-502
2. Madison-Antenucci, S., Grams, J., and Hajduk, S. L. (2002) Cell 108, 435-438
3. Simpson, L., Sbicego, S., and Aphasizhev, R. (2003) RNA (N. Y.) 9, 41-53
4. Simpson, L., Aphasizhev, R., Gao, G. G., and Kang, X. D. (2004) RNA (N. Y.) 10, 159-170
5. Stuart, K., and Panigrahi, A. K. (2002)) Mol. Microbiol. 45, 591-596
6. Pollard, V. W., Harris, M. E., and Hajduk, S. L. (1992) EMBO J. 11, 4429-4438
7. Panigrahi, A. K., Schnaufer, A., Carmean, N., Igo, R. P., Gygi, S. F., Ernst, N. L., Palazzo, S. S., Weston, D. S., Aebersold, R., Salavati, R., and Stuart, K. (2001) Mol. Cell. Biol. 21, 6833-6840
8. Panigrahi, A. K., Schnaufer, A., Ernst, N. L., Wang, B. B., Carmean, N., Salavati, R., and Stuart, K. (2003) RNA (N. Y.) 9, 484-492
9. Panigrahi, A. K., Allen, T. E., Stuart, K., Haynes, P. A., and Gygi, S. P. (2003) J. Am. Soc. Mass Spectrom. 14, 728-733
10. Aphasizhev, R., Aphasizheva, I., Nelson, R. E., Gao, G., Simpson, A. M., Kang, X., Fallick, A. M., Sbicego, S., and Simpson, L. (2003) EMBO J. 22, 913-924
11. Aphasizhev, R., Aphasizheva, I., Nelson, R. E., and Simpson, A. M. (2003) RNA (N. Y.) 9, 62-76
12. Madison-Antenucci, S., and Hajduk, S. L. (2001) Mol. Cell 7, 879-886
13. Vanhamme, L., Pérez-Morga, D., Maréchal, C., Speijer, D., Lambert, L., Geuskens, M., Alexandre, S., Ismaïli, N., Göringer, H. U., Benne, R., and Pays, E. (1998) J. Biol. Chem. 273, 21825-21833
14. Hayman, M. L., and Read, L. K. (1999) J. Biol. Chem. 274, 12067-12074
15. Pelletier, M., Miller, M. M., and Read, L. K. (2000) Nucleic Acids Res. 28, 1266-1275
16. Pelletier, M., and Read, L. K. (2003) RNA (N. Y.) 9, 457-468
17. Read, L. K., Göringer, H. U., and Stuart, K. (1994) Mol. Cell. Biol. 14, 2629-2639
18. Köller, J., Müller, U., Schmid, B., Missel, A., Kruft, V., Stuart, K., and Göringer, H. U. (1997) J. Biol. Chem. 272, 3749-3757
19. Müller, U. F., Lambert, L., and Göringer, H. U. (2001) EMBO J. 20, 1394-1404
20. Müller, U. F., and Göringer, H. U. (2002) Nucleic Acids Res. 30, 447-455
21. Allen, T. E., Heidmann, S., Reed, R., Myler, P. J., Göringer, H. U., and Stuart, K. (1998) Mol. Cell. Biol. 18, 6014-6022
22. Lambert, L., Müller, U. F., Souza, A. E., and Göringer, H. U. (1999) Nucleic Acids Res. 27, 1429-1436
23. Blom, D., van den Burg, J., Breek, C. K., Speijer, D., Muijsers, A. O., and Benne, R. (2001) Nucleic Acids Res. 29, 2950-2962
24. Schnaufer, A., Panigrahi, A. K., Panicucci, B., Igo R. P., Jr., Salavati, R., and Stuart, K. (2001) Science 291, 2159-2162
25. Wang, B. B., Ernst, N. L., Palazzo, S. S., Panigrahi, A. K., Salavati, R., and Stuart, K. (2003) Eukaryot. Cell 2, 578-587
26. Gao, G., and Simpson, L. (2003) J. Biol. Chem. 278, 27570-27574
27. Huang, C. E., Cruz-Reyes, J., Zhelonkina, A. G., O'Hearn, S., Wirtz, E., and Sollner-Webb, B. (2001) EMBO J. 20, 4694-4704
28. Huang, C. E., O'Hearn, S., and Sollner-Webb, B. (2002) Mol. Cell. Biol. 22, 3194-3202
29. O'Hearn, S. F., Huang, C. E., Hemann, M., Zhelonkina, A., and Sollner-Webb, B. (2003) Mol. Cell. Biol. 23, 7909-7919
30. Rusché, L. N., Huang, C. E., Piller, K. J., Hemann, M., Wirtz, E., and Sollner-Webb, B. (2001) Mol. Cell. Biol. 21, 979-989
31. Drozdz, M., Palazzo, S. S., Salavati, R., O'Rear, J., Clayton, C., and Stuart, K. (2002) EMBO J. 21, 1791-1799
32. Aphasizhev, R., Aphasizheva, I., and Simpson, A. M. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 10617-10622
33. Aphasizhev, R., Sbicego, S., Peris, M., Jang, S.-H., Aphasizheva, I., Simpson, A. M., Rivlin, A., and Simpson, L. (2002) Cell 108, 637-648
34. Wang, Z., Morris, J., Drew, M., and Englund, P. T. (2000) J. Biol. Chem. 275, 40174-40179
35. Domingo, G. J., Palazzo, S. S., Wang, B., Panicucci, B., Salavati, R., and Stuart, K. (2003) Eukaryot. Cell 2, 569-577
36. Madison-Antenucci, S., Sabatini, R. S., Pollard, V. W., and Hajduk, S. L. (1998) EMBO J. 17, 6368-6376
37. Panigrahi, A. K., Gygi, S. P., Ernst, N. L., Igo, R. P., Palazzo, S. S., Schnaufer, A., Weston, D. S., Carmean, N., Salavati, R., Aebersold, R., and Stuart, K. (2001) Mol. Cell. Biol. 21, 380-389
38. Parker, H. L., Hill, T., Alexander, K., Murphy, N. B., Fish, W. R., and Parsons, M. (1995) Mol. Biochem. Parasitol. 69, 269-279
39. Estévez, A. M., Kierszenbaum, F., Wirtz, E., Bringaud, F., Grunstein, J., and Simpson, L. (1999) Mol. Biochem. Parasitol. 100, 5-17
40. Igo, R. P., Jr., Palazzo, S. S., Burgess, M. L. K., Panigrahi, A. K., and Stuart, K. (2000) Mol. Cell. Biol. 20, 8447-8457
41. Igo, R. P., Jr., Weston, J., Ernst, N. L., Panigrahi, A. K., Salavati, R., and Stuart, K. (2002) Eukaryot. Cell 1, 112-118
42. Cruz-Reyes, J., Zhelonkina, A., Rusché, L. N., and Sollner-Webb, B. (2001) Mol. Cell. Biol. 21, 884-892
43. Seiwert, S. D., Heidmann, S., and Stuart, K. (1996) Cell 84, 831-841
44. Schnaufer, A., Ernst, N. L., Palazzo, S. S., O'Rear, J., Salavati, R., and Stuart, K. (2003) Mol. Cell 12, 307-319
45. Kim, K. S., Teixeira, S. M. R., Kirchhoff, L. V., and Donelson, J. E. (1994) J. Biol. Chem. 269, 1206-1211
46. Read, L. K., Myler, P. J., and Stuart, K. (1992) J. Biol. Chem. 267, 1123-1128
47. Grams, J., McManus, M. T., and Hajduk, S. L. (2000) EMBO J. 19, 5525-5532
48. Koslowsky, D. J., Bhat, G. J., Perrollaz, A. L., Feagin, J. E., and Stuart, K. (1990) Cell 62, 901-911
49. Sbicego, S., Alfonso, J. D., Estévez, A. M., Rubio, M. A. T., Kang, X. D., Turck, C. W., Peris, M., and Simpson, L. (2003) Eukaryot. Cell 2, 560-568