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Volumn 31, Issue 20, 2003, Pages 5907-5916

The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): Comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; NUCLEOTIDE; PLANT DNA; PLANT RNA; RIBOSOME RNA; TRANSFER RNA; VEGETABLE PROTEIN;

EID: 0344442430     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg795     Document Type: Article
Times cited : (332)

References (38)
  • 1
    • 0023476739 scopus 로고
    • Unicircular structure of the Brassica hirta mitochondrial genome
    • Palmer,J.D. and Herbon,L.A. (1987) Unicircular structure of the Brassica hirta mitochondrial genome. Curr. Genet., 11, 565-570.
    • (1987) Curr. Genet. , vol.11 , pp. 565-570
    • Palmer, J.D.1    Herbon, L.A.2
  • 2
    • 0019441235 scopus 로고
    • The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae)
    • Ward,B.L., Anderson,R.S. and Bendich,A.J. (1981) The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae). Cell, 25, 793-803.
    • (1981) Cell , vol.25 , pp. 793-803
    • Ward, B.L.1    Anderson, R.S.2    Bendich, A.J.3
  • 3
    • 0031021278 scopus 로고    scopus 로고
    • The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
    • Unseld,M., Marienfeld,J.R., Brandt,P. and Brennicke,A. (1997) The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nature Genet., 15, 57-61.
    • (1997) Nature Genet. , vol.15 , pp. 57-61
    • Unseld, M.1    Marienfeld, J.R.2    Brandt, P.3    Brennicke, A.4
  • 5
    • 0036456491 scopus 로고    scopus 로고
    • The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants
    • Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M. Hirai,A. and Kadowaki,K. (2002) The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol. Genet Genomics, 268, 434-445.
    • (2002) Mol. Genet. Genomics , vol.268 , pp. 434-445
    • Notsu, Y.1    Masood, S.2    Nishikawa, T.3    Kubo, N.4    Akiduki, G.5    Nakazono, M.6    Hirai, A.7    Kadowaki, K.8
  • 6
    • 0024259002 scopus 로고
    • Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence
    • Palmer,J.D. and Herbon,L.A. (1988) Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence. J. Mol. Evol., 28, 87-97.
    • (1988) J. Mol. Evol. , vol.28 , pp. 87-97
    • Palmer, J.D.1    Herbon, L.A.2
  • 7
    • 0031783729 scopus 로고    scopus 로고
    • Rapeseed mitochondrial ccb206, a gene involved in cytochrome c biogenesis is cotranscribed with the nad3 and rps12 genes: Organization, transcription and RNA editing of the nad3/rps12/ccb206 locus
    • Itani,K. and Handa,H. (1998) Rapeseed mitochondrial ccb206, a gene involved in cytochrome c biogenesis is cotranscribed with the nad3 and rps12 genes: organization, transcription and RNA editing of the nad3/rps12/ccb206 locus. Curr. Genet., 34, 318-325.
    • (1998) Curr. Genet. , vol.34 , pp. 318-325
    • Itani, K.1    Handa, H.2
  • 9
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe,T.M. and Eddy,S.R. (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25, 955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 10
    • 0027363979 scopus 로고
    • An rps14 pseudogene is transcribed and edited in Arabidopsis mitochondria
    • Brandt,P., Unseld,M., Eckert-Ossenkopp,U. and Brennicke,A. (1993) An rps14 pseudogene is transcribed and edited in Arabidopsis mitochondria. Curr. Genet., 24, 330-336.
    • (1993) Curr. Genet. , vol.24 , pp. 330-336
    • Brandt, P.1    Unseld, M.2    Eckert-Ossenkopp, U.3    Brennicke, A.4
  • 11
    • 0029794731 scopus 로고    scopus 로고
    • The rapeseed mitochondrial gene encoding a homologue of the bacterial protein Ccl1 is divided into two independently transcribed reading frames
    • Handa,H., Bonnard,G. and Grienenberger,J.M. (1996) The rapeseed mitochondrial gene encoding a homologue of the bacterial protein Ccl1 is divided into two independently transcribed reading frames. Mol. Gen. Genet., 252, 292-302.
    • (1996) Mol. Gen. Genet. , vol.252 , pp. 292-302
    • Handa, H.1    Bonnard, G.2    Grienenberger, J.M.3
  • 12
    • 0003094804 scopus 로고
    • Mitochondrial genome organization
    • Levings,C.S.,III and Vasil,I.K. (eds), Kluwer Academic Publishers, Dordrecht
    • Wolstenholme,D.R. and Fauron,C.M.-R. (1995) Mitochondrial genome organization. In Levings,C.S.,III and Vasil,I.K. (eds), The Molecular Biology of Plant Mitochondria. Kluwer Academic Publishers, Dordrecht, pp. 1-59.
    • (1995) The Molecular Biology of Plant Mitochondria , pp. 1-59
    • Wolstenholme, D.R.1    Fauron, C.M.-R.2
  • 13
    • 0033615372 scopus 로고    scopus 로고
    • Complete structure of the chloroplast genome of Arabidopsis thaliana
    • Sato,S., Nakamura,Y., Kaneko,T., Asamizu,E. and Tabata,S. (1999) Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res., 29, 283-290.
    • (1999) DNA Res. , vol.29 , pp. 283-290
    • Sato, S.1    Nakamura, Y.2    Kaneko, T.3    Asamizu, E.4    Tabata, S.5
  • 14
    • 0036051088 scopus 로고    scopus 로고
    • Structural features and expression analysis of a linear mitochondrial plasmid in rapeseed (Brassica napus L.)
    • Handa,H., Itani,K. and Sato,H. (2002) Structural features and expression analysis of a linear mitochondrial plasmid in rapeseed (Brassica napus L.). Mol. Genet. Genomics, 267, 797-805.
    • (2002) Mol. Genet. Genomics , vol.267 , pp. 797-805
    • Handa, H.1    Itani, K.2    Sato, H.3
  • 15
    • 0030266747 scopus 로고    scopus 로고
    • Regulation of gene expression in plant mitochondria
    • Binder,S., Marchfelder,A. and Brennicke,A. (1996) Regulation of gene expression in plant mitochondria. Plant Mol. Biol., 32, 303-314.
    • (1996) Plant Mol. Biol. , vol.32 , pp. 303-314
    • Binder, S.1    Marchfelder, A.2    Brennicke, A.3
  • 16
    • 0001653543 scopus 로고    scopus 로고
    • On mitochondrial promoters in Arabidopsis thaliana and other flowering plants
    • Møller,I.M., Gardeström,P., Glimelius,K. and Glaser,E. (eds), Backhuys Publishers, Leiden, Netherlands
    • Dombrowski,S., Hoffmann,M., Kuhn,J., Brennicke,A. and Binder,S. (1998) On mitochondrial promoters in Arabidopsis thaliana and other flowering plants. In Møller,I.M., Gardeström,P., Glimelius,K. and Glaser,E. (eds), Plant Mitochondria: From Gene to Function. Backhuys Publishers, Leiden, Netherlands, pp. 165-170.
    • (1998) Plant Mitochondria: From Gene to Function , pp. 165-170
    • Dombrowski, S.1    Hoffmann, M.2    Kuhn, J.3    Brennicke, A.4    Binder, S.5
  • 17
    • 0029846069 scopus 로고    scopus 로고
    • Correlation of nonanucleotide motifs with transcript initiation of 18S rRNA genes in mitochondria of pea, potato and Arabidopsis
    • Giese,A., Thalheim,C., Brennicke,A. and Binder,S. (1996) Correlation of nonanucleotide motifs with transcript initiation of 18S rRNA genes in mitochondria of pea, potato and Arabidopsis. Mol. Gen. Genet., 252, 429-436.
    • (1996) Mol. Gen. Genet. , vol.252 , pp. 429-436
    • Giese, A.1    Thalheim, C.2    Brennicke, A.3    Binder, S.4
  • 18
    • 0038779363 scopus 로고    scopus 로고
    • o)-ATP synthase: Insight into the basis of cytoplasmic male sterility in sunflower
    • o)-ATP synthase: insight into the basis of cytoplasmic male sterility in sunflower. EMBO Rep., 4, 381-386.
    • (2003) EMBO Rep. , vol.4 , pp. 381-386
    • Sabar, M.1    Gagliardi, D.2    Balk, J.3    Leaver, C.J.4
  • 19
    • 0033592907 scopus 로고    scopus 로고
    • RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs
    • Giegé,P. and Brennicke,A. (1999) RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs. Proc. Natl Acad. Sci. USA, 96, 15324-15329.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 15324-15329
    • Giegé, P.1    Brennicke, A.2
  • 20
    • 0030909253 scopus 로고    scopus 로고
    • Brassica nap cytoplasmic male sterility is associated with expression of a mtDNA region containing a chimeric gene similar to the pol CMS-associated orf224 gene
    • L'Homme,Y., Stahl,R.J., Li,X.Q., Hameed,A. and Brown,G.G. (1997) Brassica nap cytoplasmic male sterility is associated with expression of a mtDNA region containing a chimeric gene similar to the pol CMS-associated orf224 gene. Curr. Genet., 31, 325-335.
    • (1997) Curr. Genet. , vol.31 , pp. 325-335
    • L'Homme, Y.1    Stahl, R.J.2    Li, X.Q.3    Hameed, A.4    Brown, G.G.5
  • 21
    • 0027335980 scopus 로고
    • Editing of rps3/rpl16 transcripts creates a premature truncation of the rpl16 open reading frame
    • Sutton,C.A., Conklin,P.L., Pruitt,K.D., Calfee,AJ., Cobb,A.G. and Hanson,M.R. (1993) Editing of rps3/rpl16 transcripts creates a premature truncation of the rpl16 open reading frame. Curr. Genet., 23, 472-476.
    • (1993) Curr. Genet. , vol.23 , pp. 472-476
    • Sutton, C.A.1    Conklin, P.L.2    Pruitt, K.D.3    Calfee, A.J.4    Cobb, A.G.5    Hanson, M.R.6
  • 22
    • 0031215039 scopus 로고    scopus 로고
    • An unusual mitochondrial atp9-rpl16 cotranscript found in the maternal distorted leaf mutant of Arabidopsis thaliana: Implication of GUG as an initiation codon in plant mitochondria
    • Sakamoto,W., Tan,S.-H., Murata,M. and Motoyoshi,F. (1997) An unusual mitochondrial atp9-rpl16 cotranscript found in the maternal distorted leaf mutant of Arabidopsis thaliana: Implication of GUG as an initiation codon in plant mitochondria. Plant Cell Physiol., 38, 975-979.
    • (1997) Plant Cell Physiol. , vol.38 , pp. 975-979
    • Sakamoto, W.1    Tan, S.-H.2    Murata, M.3    Motoyoshi, F.4
  • 23
    • 0028386924 scopus 로고
    • Rps3 and rpl16 genes do not overlap in Oenothera mitochondria: GTG as a potential translation initiation codon in plant mitochondria?
    • Bock,H., Brennicke,A. and Schuster,W. (1994) Rps3 and rpl16 genes do not overlap in Oenothera mitochondria: GTG as a potential translation initiation codon in plant mitochondria? Plant Mol. Biol., 24, 811-818.
    • (1994) Plant Mol. Biol. , vol.24 , pp. 811-818
    • Bock, H.1    Brennicke, A.2    Schuster, W.3
  • 24
    • 0026777563 scopus 로고
    • Gene clusters for ribosomial proteins in the mitochondrial genome of a liverwort, Marchantia polymorpha
    • Takemura,M., Oda,K., Yamato,K., Ohta,E., Nakamura,Y., Nozato,N., Akashi,K. and Ohyama,K. (1992) Gene clusters for ribosomial proteins in the mitochondrial genome of a liverwort, Marchantia polymorpha. Nucleic Acids Res., 20, 3199-3205.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 3199-3205
    • Takemura, M.1    Oda, K.2    Yamato, K.3    Ohta, E.4    Nakamura, Y.5    Nozato, N.6    Akashi, K.7    Ohyama, K.8
  • 25
    • 0024296971 scopus 로고
    • Ribosomal protein S14 genes in broad bean mitochondria
    • Wahleithner,J.A. and Wolstenholme,D.R. (1988) Ribosomal protein S14 genes in broad bean mitochondria. Nucleic Acids Res., 16, 6897-6913.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 6897-6913
    • Wahleithner, J.A.1    Wolstenholme, D.R.2
  • 26
    • 0025017823 scopus 로고
    • Ribosomal protein S14 transcripts are edited in Oenothera mitochondria
    • Schuster,W., Unseld,M., Wissinger,B. and Brennicke,A. (1990) Ribosomal protein S14 transcripts are edited in Oenothera mitochondria. Nucleic Acids Res., 18, 229-233.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 229-233
    • Schuster, W.1    Unseld, M.2    Wissinger, B.3    Brennicke, A.4
  • 27
    • 0033004412 scopus 로고    scopus 로고
    • Cotranscription of the rpl5-rps14-cob gene cluster in pea mitochondria
    • Hoffmann,M., Dombrowski,S., Guha,C. and Binder,S. (1999) Cotranscription of the rpl5-rps14-cob gene cluster in pea mitochondria. Mol. Gen. Genet., 261, 537-545.
    • (1999) Mol. Gen. Genet. , vol.261 , pp. 537-545
    • Hoffmann, M.1    Dombrowski, S.2    Guha, C.3    Binder, S.4
  • 28
    • 0032829056 scopus 로고    scopus 로고
    • The gene for mitochondrial ribosomal protein S14 has been transferred to the nucleus in Arabidopsis thaliana
    • Figueroa,P., Gomez,I., Carmona,R., Holuigue,L., Araya,A. and Jordana,X. (1999) The gene for mitochondrial ribosomal protein S14 has been transferred to the nucleus in Arabidopsis thaliana. Mol. Gen. Genet., 262, 139-144.
    • (1999) Mol. Gen. Genet. , vol.262 , pp. 139-144
    • Figueroa, P.1    Gomez, I.2    Carmona, R.3    Holuigue, L.4    Araya, A.5    Jordana, X.6
  • 29
    • 0040370341 scopus 로고    scopus 로고
    • Transfer of rps14 from the mitochondrion to the nucleus in maize implied integration within a gene encoding the iron-sulphur subunit of succinate dehydrogenase and expression by alternative splicing
    • Figueroa,P., Gomez,I., Carmona,R., Holuigue,L., Araya,A. and Jordana,X. (1999) Transfer of rps14 from the mitochondrion to the nucleus in maize implied integration within a gene encoding the iron-sulphur subunit of succinate dehydrogenase and expression by alternative splicing. Plant J., 18, 601-609.
    • (1999) Plant J. , vol.18 , pp. 601-609
    • Figueroa, P.1    Gomez, I.2    Carmona, R.3    Holuigue, L.4    Araya, A.5    Jordana, X.6
  • 30
    • 0033529792 scopus 로고    scopus 로고
    • A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins
    • Kubo,N., Harada,K., Hirai,A. and Kadowaki,K. (1999) A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins. Proc. Natl Acad Sci. USA, 96, 9207-9211.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 9207-9211
    • Kubo, N.1    Harada, K.2    Hirai, A.3    Kadowaki, K.4
  • 31
    • 0028833917 scopus 로고
    • A gene proposed to encode a transmembrane domain of an ABC transporter is expressed in wheat mitochondria
    • Bonnard,G. and Grienenberger,J.M. (1995) A gene proposed to encode a transmembrane domain of an ABC transporter is expressed in wheat mitochondria. Mol. Gen. Genet., 246, 91-99.
    • (1995) Mol. Gen. Genet. , vol.246 , pp. 91-99
    • Bonnard, G.1    Grienenberger, J.M.2
  • 33
    • 0026558482 scopus 로고
    • Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome
    • Oda,K., Yamato,K., Ohta,E., Nakamura,Y., Takemura,M., Nozato,N., Akashi,K., Kanegae,T., Ogura,Y., Kohchij. et al. (1992) Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome. J. Mol. Biol., 223, 1-7.
    • (1992) J. Mol. Biol. , vol.223 , pp. 1-7
    • Oda, K.1    Yamato, K.2    Ohta, E.3    Nakamura, Y.4    Takemura, M.5    Nozato, N.6    Akashi, K.7    Kanegae, T.8    Ogura, Y.9    Kohchi, T.10
  • 34
    • 0030908745 scopus 로고    scopus 로고
    • The rapeseed mitochondrial gene for subunit 2 of the NADH dehydrogenase complex: A trans-spliced structure is conserved on one of the smallest plant mitochondrial genome
    • Handa,H., Mizobuchi-Fukuoka,R. and Pinyarat,W. (1997) The rapeseed mitochondrial gene for subunit 2 of the NADH dehydrogenase complex: A trans-spliced structure is conserved on one of the smallest plant mitochondrial genome. Curr. Genet., 31, 336-342.
    • (1997) Curr. Genet. , vol.31 , pp. 336-342
    • Handa, H.1    Mizobuchi-Fukuoka, R.2    Pinyarat, W.3
  • 35
    • 0026758125 scopus 로고
    • RNA editing of atp6 transcripts from male-sterile and normal cytoplasms of rapeseed (Brassica napus L.)
    • Handa,H. and Nakajima,K. (1992) RNA editing of atp6 transcripts from male-sterile and normal cytoplasms of rapeseed (Brassica napus L.). FEBS Lett., 310, 111-114.
    • (1992) FEBS Lett. , vol.310 , pp. 111-114
    • Handa, H.1    Nakajima, K.2
  • 36
    • 0028879446 scopus 로고
    • Characterization of the mitochondrial orfB gene and its derivative, orf224, a chimeric open reading frame specific to the mitochondrial genome of 'Polima' male-sterile cytoplasm in rapeseed (Brassica napus L.)
    • Handa,H., Gualberto,J.M. and Grienenberger,J.M. (1995) Characterization of the mitochondrial orfB gene and its derivative, orf224, a chimeric open reading frame specific to the mitochondrial genome of 'Polima' male-sterile cytoplasm in rapeseed (Brassica napus L.). Curr. Genet., 28, 546-552.
    • (1995) Curr. Genet. , vol.28 , pp. 546-552
    • Handa, H.1    Gualberto, J.M.2    Grienenberger, J.M.3
  • 37
    • 0027277084 scopus 로고
    • RNA editing of rapeseed atp9 transcripts: RNA editing changes four amino acids, but termination codon is already encoded by genomic sequence
    • Handa,H. (1993) RNA editing of rapeseed atp9 transcripts: RNA editing changes four amino acids, but termination codon is already encoded by genomic sequence. Jpn. J. Genet., 68, 47-54.
    • (1993) Jpn. J. Genet. , vol.68 , pp. 47-54
    • Handa, H.1
  • 38
    • 0031864555 scopus 로고    scopus 로고
    • Genes for the mitochondrial ribosomal S4 protein encoded by higher plant mitochondria are transcribed, edited and translated
    • Handa,H., Kubo,N. and Kadowaki,K. (1998) Genes for the mitochondrial ribosomal S4 protein encoded by higher plant mitochondria are transcribed, edited and translated. Mol. Gen. Genet., 258, 199-207.
    • (1998) Mol. Gen. Genet. , vol.258 , pp. 199-207
    • Handa, H.1    Kubo, N.2    Kadowaki, K.3


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