A compact RNA tertiary structure contains a buried backbone-K+ complex

Journal of molecular biology

Volumn 318, Issue 4, 2002, Pages 963-973

  Conn, Graeme L ^a   Gittis, Apostolos G ^a   Lattman, Eaton E ^a   Misra, Vinod K ^a   Draper, David E ^a  

^a JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HYDROXYL RADICAL; PHOSPHATE; POTASSIUM; RIBOSOMAL PROTEIN L11; RIBOSOME PROTEIN; RNA 23S;

ARTICLE; BINDING SITE; CHEMISTRY; CONFORMATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; THERMODYNAMICS;

BASE SEQUENCE; BINDING SITES; HYDROXYL RADICAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHOSPHATES; POTASSIUM; RIBOSOMAL PROTEINS; RNA, RIBOSOMAL, 23S; THERMODYNAMICS;

EID: 0037053427     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(02)00147-X     Document Type: Article

References (47)

1. J.H Cate R.L Hanna J.A Doudna Nature Struct. Biol. 4 1997 553 558
2. D.E Draper V.K Misra Nature Struct. Biol. 5 1998 927 930
3. G Eisenman R Horn J. Membr. Biol. 76 1983 197 225
4. V.K Misra D.E Draper Proc. Natl Acad. Sci. USA 98 2001 12456 12461
5. G.L Conn D.E Draper E.E Lattman A.G Gittis Science 284 1999 1171 1174
6. R Shiman D.E Draper J. Mol. Biol. 302 2000 79 91
7. R.R Gutell M.W Gray M.N Schnare Nucl. Acids Res. 21 1993 3055 3074
8. N Ban P Nissen J Hansen P.B Moore T.A Steitz Science 289 2000 905 920
9. J Harms F Schluenzen R Zarivach A Bashan S Gat I Agmon Cell 107 2001 679 688
10. M.M Yusupov G.Z Yusupova A Baucom K Lieberman T.N Earnest J.H Cate H.F Noller Science 292 2001 883 896
11. M Lu D.E Draper J. Mol. Biol. 244 1994 572 585
12. G.L Conn R.R Gutell D.E Draper Biochemistry 37 1998 11980 11988
13. J.A Latham T.R Cech Science 245 1989 226 245
14. B Balasubramanian W.K Pogozelski T.D Tullius Proc. Natl Acad. Sci. USA 95 1998 9738 9743
15. G Rosendahl S Douthwaite J. Mol. Biol. 234 1993 1013 1020
16. L Pauling The Nature of the Chemical Bond 1960 Cornell University Press Ithaca, NY
17. S Basu R.P Rambo J Strauss-Soukup J.H Cate A.R Ferré-D'Amare S.A Strobel J.A Doudna Nature Struct. Biol. 5 1998 986 992
18. C.C Correll I.G Wool A Munishkin J. Mol. Biol. 292 1999 275 287
19. S.B Howerton C.C Sines D VanDerveer L.D Williams Biochemistry 40 2001 10023 10031
20. A.G Lee The Chemistry of Thallium 1971 Elsevier New York
21. J.T Edsall H.A McKenzie Advan. Biophys. 10 1978 137 207
22. M.K Gilson A Rashin R Fine B Honig J. Mol. Biol. 184 1985 503 516
23. L.M Amzel Proteins: Struct. Funct. Genet. 28 1997 144 149
24. Y.-X Wang M Lu D.E Draper Biochemistry 32 1993 12279 12282
25. Y.V Bukhman D.E Draper J. Mol. Biol. 274 1997 1020 1031
26. Misra, V.K. & Draper, D.E. (2001). The linkage between magnesium binding and RNA folding. J. Mol. Biol. 317 , 509–523.
27. P.R Schimmel A.G Redfield Annu. Rev. Biophys. Bioeng. 9 1980 181 221
28. X Fang T Pan T.R Sosnick Biochemistry 38 1999 16840 16846
29. W Guschlbauer J.-F Chantot D Thiele J. Biomol. Struct. Dynam. 8 1990 491 511
30. K Phillips Z Dauter A.I Murchie D.M Lilley B Luisi J. Mol. Biol. 273 1997 171 182
31. N.V Hud F.W Smith F.A Anet J Feigon Biochemistry 35 1996 15383 15390
32. N.V Hud P Schultze V Sklenar J Feigon J. Mol. Biol. 285 1999 233 243
33. F.M Chen Biochemistry 31 1992 3769 3776
34. R Miskin A Zamir D Elson J. Mol. Biol. 54 1970 355 378
35. A Zamir R Miskin D Elson J. Mol. Biol. 60 1971 347 364
36. A.T Brunger P.D Adams G.M Clore W.L DeLano P Gros R.W Grosse-Kunstleve Acta Crystallog. sect. D 54 1998 905 921
37. B Honig A Nicholls Science 268 1995 1144 1149
38. V.K Misra D.E Draper J. Mol. Biol. 299 2000 813 825
39. K.A Sharp B Honig Annu. Rev. Biophys. Biomol. Struct. 19 1990
40. M.K Gilson B Honig Proteins: Struct. Funct. Genet. 4 1988 7 18
41. V.K Misra J.L Hecht A.-S Yang B Honig Biophys. J. 75 1998 2262 2273
42. V.K Misra B Honig Proc. Natl Acad. Sci. USA 92 1995 4691 4695
43. K.A Sharp Biopolymers 36 1995 227 243
44. W.D Cornell P Cieplak C.I Bayly I.R Gould K.M Merz D.M Ferguson J. Am. Chem. Soc. 117 1995 5179 5197
45. Y Marcus Ion Properties 1997 Marcel Dekker New York
46. M.K Gilson B.H Honig Biopolymers 25 1986 2097 2119
47. A Nicholls B Honig J. Comput. Chem. 12 1991 435 445