-
1
-
-
0033117763
-
Matching theory and experiment in protein folding
-
Alm, E., and Baker, D. 1999a. Matching theory and experiment in protein folding. Curr. Op. Str. Biol. 9, 189-196.
-
(1999)
Curr. Op. Str. Biol.
, vol.9
, pp. 189-196
-
-
Alm, E.1
Baker, D.2
-
2
-
-
0033613255
-
Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures
-
Alm, E., and Baker, D. 1999b. Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures. Proc. Natl. Acad. Sci. USA 96, 11305-11310.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11305-11310
-
-
Alm, E.1
Baker, D.2
-
3
-
-
0002726880
-
OBPRM: An obstacle-based PRM for 3D workspaces
-
Amato, N.M., Bayazit, O.B., Dale, L.K., Jones, C.V., and Vallejo, D. 1998. OBPRM: An obstacle-based PRM for 3D workspaces. Proc. Int. Workshop on Algorithmic Foundations of Robotics (WAFR), 155-168.
-
(1998)
Proc. Int. Workshop on Algorithmic Foundations of Robotics (WAFR)
, pp. 155-168
-
-
Amato, N.M.1
Bayazit, O.B.2
Dale, L.K.3
Jones, C.V.4
Vallejo, D.5
-
4
-
-
0010403655
-
-
Technical Report 01-001, PARASOL Lab, Dept. of Computer Science, Texas A&M University
-
Amato, N.M., and Song, G. 2001. Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures. Technical Report 01-001, PARASOL Lab, Dept. of Computer Science, Texas A&M University.
-
(2001)
Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures
-
-
Amato, N.M.1
Song, G.2
-
5
-
-
0036100047
-
Using motion planning to study protein folding pathways
-
Amato, N.M., and Song, G. 2002. Using motion planning to study protein folding pathways. J. Comp. Biol. 9(2), 149-168.
-
(2002)
J. Comp. Biol.
, vol.9
, Issue.2
, pp. 149-168
-
-
Amato, N.M.1
Song, G.2
-
6
-
-
0036374348
-
Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion
-
Apaydin, M.S., Brutlag, D.L., Guestrin, C., Hsu, D., and Latombe, J.-C. 2002. Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion. Proc. Int. Conf. Comput. Molecular Biology (RECOMB), 12-21.
-
(2002)
Proc. Int. Conf. Comput. Molecular Biology (RECOMB)
, pp. 12-21
-
-
Apaydin, M.S.1
Brutlag, D.L.2
Guestrin, C.3
Hsu, D.4
Latombe, J.-C.5
-
7
-
-
0034861208
-
Capturing molecular energy landscapes with probabilistic conformational roadmaps
-
Apaydin, M.S., Singh, A.P., Brutlag, D.L., and Latombe, J.-C. 2001. Capturing molecular energy landscapes with probabilistic conformational roadmaps. Proc. IEEE Int. Conf. Robot. Autom. (ICRA), 932-939.
-
(2001)
Proc. IEEE Int. Conf. Robot. Autom. (ICRA)
, pp. 932-939
-
-
Apaydin, M.S.1
Singh, A.P.2
Brutlag, D.L.3
Latombe, J.-C.4
-
8
-
-
0034604105
-
A surprising simplicity to protein folding
-
Baker, D. 2000. A surprising simplicity to protein folding. Nature 405, 39-42.
-
(2000)
Nature
, vol.405
, pp. 39-42
-
-
Baker, D.1
-
9
-
-
0032972986
-
Is protein folding hierarchic? I. Local structure and peptide folding
-
Baldwin, R.L., and Rose, G.D. 1999. Is protein folding hierarchic? I. local structure and peptide folding. Trends Biochem Sci. 24, 26-33.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 26-33
-
-
Baldwin, R.L.1
Rose, G.D.2
-
10
-
-
0034868624
-
Ligand binding with OBPRM and haptic user input: Enhancing automatic motion planning with virtual touch
-
This work was also presented as a poster at RECOMB 2001
-
Bayazit, O.B., Song, G., and Amato, N.M. 2001. Ligand binding with OBPRM and haptic user input: Enhancing automatic motion planning with virtual touch. Proc. IEEE Int. Conf. Robot. Autom. (ICRA), 954-959. This work was also presented as a poster at RECOMB 2001.
-
(2001)
Proc. IEEE Int. Conf. Robot. Autom. (ICRA)
, pp. 954-959
-
-
Bayazit, O.B.1
Song, G.2
Amato, N.M.3
-
11
-
-
0032631144
-
The Gaussian sampling strategy for probabilistic roadmap planners
-
Boor, V., Overmars, M.H., and van der Stappen, A.F. 1999. The Gaussian sampling strategy for probabilistic roadmap planners. Proc. IEEE Int. Conf. Robot. Autom. (ICRA), 1018-1023.
-
(1999)
Proc. IEEE Int. Conf. Robot. Autom. (ICRA)
, pp. 1018-1023
-
-
Boor, V.1
Overmars, M.H.2
Van Der Stappen, A.F.3
-
12
-
-
0028947257
-
Is protein folding hierarchic? I. Local structure and peptide folding
-
Bryngelson, J.D., Onuchic, J.N., Socci, N.D., and Wolynes, P.G. 1995. Is protein folding hierarchic? I. local structure and peptide folding. Prot. Struct. Funct. Genet. 21, 167-195.
-
(1995)
Prot. Struct. Funct. Genet.
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
13
-
-
0344301982
-
Protein folding: A perspective from theory and experiment
-
Dobson, C.M., Sali, A., and Karplus, M. 1998. Protein folding: A perspective from theory and experiment. Angew. Chem. Int. Ed. 37, 868-893.
-
(1998)
Angew. Chem. Int. Ed.
, vol.37
, pp. 868-893
-
-
Dobson, C.M.1
Sali, A.2
Karplus, M.3
-
14
-
-
0004116989
-
-
MIT Press, Cambridge, MA
-
Cormen, T.H., Leiserson, C.E., and Rivest, R.L. 1992. Introduction to Algorithms, 6th ed., MIT Press, Cambridge, MA.
-
(1992)
Introduction to Algorithms, 6th Ed.
-
-
Cormen, T.H.1
Leiserson, C.E.2
Rivest, R.L.3
-
15
-
-
0027405357
-
Cooperativity in protein-folding kinetics
-
Dill, K.A., Fiebig, K.M., and Chan, H.S. 1993. Cooperativity in protein-folding kinetics. Proc. Natl. Acad. Sci. USA 90, 1942-1946.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 1942-1946
-
-
Dill, K.A.1
Fiebig, K.M.2
Chan, H.S.3
-
16
-
-
0000381972
-
Protein core assembly processes
-
Fiebig, K.M., and Dill, K.A. 1993. Protein core assembly processes. J. Chem. Phys. 98(4), 3475-3487.
-
(1993)
J. Chem. Phys.
, vol.98
, Issue.4
, pp. 3475-3487
-
-
Fiebig, K.M.1
Dill, K.A.2
-
18
-
-
0001185779
-
On finding narrow passages with probabilistic roadmap planners
-
Hsu, D., Kavraki, L., Latombe, J.-C., Motwani, R., and Sorkin, S. 1998. On finding narrow passages with probabilistic roadmap planners. Proc. Int. Workshop on Algorithmic Foundations of Robotics (WAFR).
-
(1998)
Proc. Int. Workshop on Algorithmic Foundations of Robotics (WAFR)
-
-
Hsu, D.1
Kavraki, L.2
Latombe, J.-C.3
Motwani, R.4
Sorkin, S.5
-
21
-
-
0030212126
-
Probabilistic roadmaps for path planning in high-dimensional configuration spaces
-
Kavraki, L., Svestka, P., Latombe, J.C., and Overmars, M. 1996. Probabilistic roadmaps for path planning in high-dimensional configuration spaces. IEEE Trans. Robot. Automat. 12(4), 566-580.
-
(1996)
IEEE Trans. Robot. Automat.
, vol.12
, Issue.4
, pp. 566-580
-
-
Kavraki, L.1
Svestka, P.2
Latombe, J.C.3
Overmars, M.4
-
22
-
-
0033616682
-
Evolution of amyloid: What normal protein folding may tell us about fibrillogenesis and disease
-
Lansbury, P.T. 1999. Evolution of amyloid: What normal protein folding may tell us about fibrillogenesis and disease. Proc. Natl. Acad. Sci. USA 96, 3342-3344.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3342-3344
-
-
Lansbury, P.T.1
-
24
-
-
0030996005
-
Protein folding: The endgame
-
Levitt, M., Gerstein, M., Huang, E., Subbiah, S., and Tsai, J. 1997. Protein folding: The endgame. Ann. Rev. Biochem. 66, 549-579.
-
(1997)
Ann. Rev. Biochem.
, vol.66
, pp. 549-579
-
-
Levitt, M.1
Gerstein, M.2
Huang, E.3
Subbiah, S.4
Tsai, J.5
-
25
-
-
0344603844
-
The hydrogen exchange core and protein folding
-
Li, R., and Woodward, C. 1999. The hydrogen exchange core and protein folding. Protein Sci. 8, 1571-1591.
-
(1999)
Protein Sci.
, vol.8
, pp. 1571-1591
-
-
Li, R.1
Woodward, C.2
-
27
-
-
0033613165
-
A simple model for calculating the kinetics of protein folding from three dimensional structures
-
Muñoz, V., and Eaton, W.A. 1999. A simple model for calculating the kinetics of protein folding from three dimensional structures. Proc. Natl. Acad. Sci. USA 96, 11311-11316.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11311-11316
-
-
Muñoz, V.1
Eaton, W.A.2
-
28
-
-
0032568537
-
A statistical mechanical model for β-hairpin kinetics
-
Mũoz, V., Henry, E.R., Hoferichter, J., and Eaton, W.A. 1998. A statistical mechanical model for β-hairpin kinetics. Proc. Natl. Acad. Sci. USA 95, 5872-5879.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5872-5879
-
-
Mũoz, V.1
Henry, E.R.2
Hoferichter, J.3
Eaton, W.A.4
-
29
-
-
0002869136
-
Folding and unfolding in computational geometry
-
Revised version submitted to LLNCS
-
O'Rourke, J. 1998. Folding and unfolding in computational geometry. Proc. Japan Conf. Discrete Comput. Geom. '98, 142-147. Revised version submitted to LLNCS.
-
(1998)
Proc. Japan Conf. Discrete Comput. Geom. '98
, pp. 142-147
-
-
O'Rourke, J.1
-
30
-
-
0029653893
-
Insights into protein folding using physical techniques: Studies of lysozyme and α-lactalbumin
-
Radford, S. E., and Dobson, C. M. 1995. Insights into protein folding using physical techniques: Studies of lysozyme and α-lactalbumin. Phil. Trans. R. Soc. Lond. B348, 17.
-
(1995)
Phil. Trans. R. Soc. Lond.
, vol.B348
, pp. 17
-
-
Radford, S.E.1
Dobson, C.M.2
-
31
-
-
0002023892
-
Protein folding: Computational approaches to an exponential-time problem
-
Reeke, G.N., Jr. 1988. Protein folding: Computational approaches to an exponential-time problem. Ann. Rev. Comput. Sci. 3, 59-84.
-
(1988)
Ann. Rev. Comput. Sci.
, vol.3
, pp. 59-84
-
-
Reeke G.N., Jr.1
-
32
-
-
0033287530
-
A motion planning approach to flexible ligand binding
-
Singh, A.P., Latombe, J.C., and Brutlag, D.L. 1999. A motion planning approach to flexible ligand binding. Proc. 7th Int. Conf. Intelligent Systems for Molecular Biology (ISMB), 252-261.
-
(1999)
Proc. 7th Int. Conf. Intelligent Systems for Molecular Biology (ISMB)
, pp. 252-261
-
-
Singh, A.P.1
Latombe, J.C.2
Brutlag, D.L.3
-
33
-
-
0034867914
-
A motion planning approach to folding: From paper craft to protein folding
-
Song, G., and Amato, N.M. 2001a. A motion planning approach to folding: From paper craft to protein folding. Proc. IEEE Int. Conf. Robot. Autom. (ICRA), 948-953.
-
(2001)
Proc. IEEE Int. Conf. Robot. Autom. (ICRA)
, pp. 948-953
-
-
Song, G.1
Amato, N.M.2
-
35
-
-
0032632832
-
MAPRM: A probabilistic roadmap planner with sampling on the medial axis of the free space
-
Wilmarth, S.A., Amato, N.M., and Stiller, P.F. 1999. MAPRM: A probabilistic roadmap planner with sampling on the medial axis of the free space. Proc. IEEE Int. Conf. Robot. Autom. (ICRA), 1024-1031.
-
(1999)
Proc. IEEE Int. Conf. Robot. Autom. (ICRA)
, pp. 1024-1031
-
-
Wilmarth, S.A.1
Amato, N.M.2
Stiller, P.F.3
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