Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion

Proceedings of the Annual International Conference on Computational Molecular Biology, RECOMB

Volumn , Issue , 2002, Pages 12-21

  Apaydin, Mehmet Serkan ^a   Brutlag, Douglas L ^a   Guestrin, Carlos ^a   Hsu, David ^a   Latombe, Jean Claude ^a  

^a Stanford University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; CONFORMAL MAPPING; CONVERGENCE OF NUMERICAL METHODS; MOLECULAR DYNAMICS; MONTE CARLO METHODS; PROTEINS; RANDOM PROCESSES; REACTION KINETICS;

MOLECULAR MOTION; PROTEIN FOLDING; STOCHASTIC ROADMAP SIMULATION;

COMPUTER SIMULATION;

EID: 0036374348     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (25)

1. Principles that govern the folding of protein chains
2. Capturing molecular energy landscapes with probabilistic conformational roadmaps
3. The protein data bank: A computer-based archival file for macromolecular structure
4. Funnels, pathways, and the energy landscape of protein folding: A synthesis
5. From levinthal to pathways to funnels
6. The fundamentals of protein folding: Bringing together theory and experiment
7. On the transition coordinate for protein folding
8. The evolution of the minimum degree ordering algorithm
9. Sparse matrices in matlab: Design and implementation
10. Cooling schedules for optimal annealing
11. Probability inequalities for sum of bounded random variables
12. Probabilistic roadmaps for path planning in high-dimensional configuration space
13. Pathways for protein folding: Is a new view needed
14. Using motion planning to study protein folding pathways
15. Hierarchical protein structure superposition using both secondary structure and atomic representations
16. The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation
17. A motion planning approach to flexible ligand binding
18. A simple protein folding algorithm using a binary code and secondary structure constraints