-
1
-
-
0035221502
-
Perspectives for mass spectrometry and functional proteomics
-
Godovac-Zimmermann J, Brown LR: Perspectives for mass spectrometry and functional proteomics. Mass Spectrom Rev (2001) 20(1):1-57.
-
(2001)
Mass Spectrom. Rev.
, vol.20
, Issue.1
, pp. 1-57
-
-
Godovac-Zimmermann, J.1
Brown, L.R.2
-
2
-
-
0034657819
-
Zeptomole-sensitivity electrospray ionisation - Fourier transform ion cyclotron resonance mass spectrometry of proteins
-
Belov ME, Gorshkov MV, Udseth HR, Anderson GA, Smith RD: Zeptomole-sensitivity electrospray ionisation - Fourier transform ion cyclotron resonance mass spectrometry of proteins. Anal Chem (2000) 72(10):2271-2279.
-
(2000)
Anal. Chem.
, vol.72
, Issue.10
, pp. 2271-2279
-
-
Belov, M.E.1
Gorshkov, M.V.2
Udseth, H.R.3
Anderson, G.A.4
Smith, R.D.5
-
4
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
Wolters DA, Washburn MP, Yates JR 3rd: An automated multidimensional protein identification technology for shotgun proteomics. Anal Chem (2001) 73(23):5683-5690.
-
(2001)
Anal. Chem.
, vol.73
, Issue.23
, pp. 5683-5690
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates J.R. III3
-
5
-
-
0036749343
-
Proteomics based on high-efficiency capillary separations
-
Shen Y, Smith RD: Proteomics based on high-efficiency capillary separations. Electrophoresis (2002) 23(18):3106-3124.
-
(2002)
Electrophoresis
, vol.23
, Issue.18
, pp. 3106-3124
-
-
Shen, Y.1
Smith, R.D.2
-
6
-
-
0037307816
-
Advances in quantitative proteomics via stable isotope tagging and mass spectrometry
-
Tao WA, Aebersold R: Advances in quantitative proteomics via stable isotope tagging and mass spectrometry. Curr Opin Biotechnol (2003) 14(1):110-118.
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, Issue.1
, pp. 110-118
-
-
Tao, W.A.1
Aebersold, R.2
-
7
-
-
0037307837
-
Stable isotope-coded proteomic mass spectrometry
-
Goshe MB, Smith RD: Stable isotope-coded proteomic mass spectrometry. Curr Opin Biotechnol (2003) 14(1):101-109.
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, Issue.1
, pp. 101-109
-
-
Goshe, M.B.1
Smith, R.D.2
-
8
-
-
0037326081
-
Mass spectrometric-based approaches in quantitative proteomics
-
Ong S-E, Foster LJ, Mann M: Mass spectrometric-based approaches in quantitative proteomics. Methods (2003) 29(2):124-130.
-
(2003)
Methods
, vol.29
, Issue.2
, pp. 124-130
-
-
Ong, S.-E.1
Foster, L.J.2
Mann, M.3
-
9
-
-
0036629573
-
Modern strategies for protein quantification in proteome analysis: Advantages and limitations
-
Hamdan M, Righetti PG: Modern strategies for protein quantification in proteome analysis: Advantages and limitations. Mass Spectrom Rev (2002) 21(4):287-302.
-
(2002)
Mass Spectrom. Rev.
, vol.21
, Issue.4
, pp. 287-302
-
-
Hamdan, M.1
Righetti, P.G.2
-
10
-
-
0036208433
-
Two-dimensional gel electrophoresis in proteomics: Old, old fashioned, but it still climbs up the mountains
-
Rabilloud T: Two-dimensional gel electrophoresis in proteomics: Old, old fashioned, but it still climbs up the mountains. Proteomics (2002) 2(1):3-10.
-
(2002)
Proteomics
, vol.2
, Issue.1
, pp. 3-10
-
-
Rabilloud, T.1
-
11
-
-
0036669447
-
Two-dimensional gel electrophoresis; better than a poke in the ICAT?
-
Patton WF, Schulenberg B, Steinberg TH: Two-dimensional gel electrophoresis; better than a poke in the ICAT? Curr Opin Biotechnol (2002) 13(4):321-328.
-
(2002)
Curr. Opin. Biotechnol.
, vol.13
, Issue.4
, pp. 321-328
-
-
Patton, W.F.1
Schulenberg, B.2
Steinberg, T.H.3
-
14
-
-
0035478709
-
Analysis of phosphorylated proteins and peptides by mass spectrometry
-
McLachlin DT, Chait BT: Analysis of phosphorylated proteins and peptides by mass spectrometry. Curr Opin Chem Biol (2001) 5(5):591-602.
-
(2001)
Curr. Opin. Chem. Biol.
, vol.5
, Issue.5
, pp. 591-602
-
-
McLachlin, D.T.1
Chait, B.T.2
-
15
-
-
0036605185
-
Analysis of protein phosphorylation using mass spectrometry: Deciphering the phosphoproteome
-
Mann M, Ong SE, Gronborg M, Steen H, Jensen ON, Pandey A: Analysis of protein phosphorylation using mass spectrometry: Deciphering the phosphoproteome. Trends Biotechnol (2002) 20(6):261-268.
-
(2002)
Trends Biotechnol.
, vol.20
, Issue.6
, pp. 261-268
-
-
Mann, M.1
Ong, S.E.2
Gronborg, M.3
Steen, H.4
Jensen, O.N.5
Pandey, A.6
-
16
-
-
0036273209
-
Mapping phosphorylation sites in proteins by mass spectrometry
-
Shou W, Verma R, Annan RS, Huddleston MJ, Chen SL, Carr SA, Deshaies RJ: Mapping phosphorylation sites in proteins by mass spectrometry. Methods Enzymol (2002) 351:279-296.
-
(2002)
Methods Enzymol.
, vol.351
, pp. 279-296
-
-
Shou, W.1
Verma, R.2
Annan, R.S.3
Huddleston, M.J.4
Chen, S.L.5
Carr, S.A.6
Deshaies, R.J.7
-
17
-
-
19044380048
-
Androgen receptor phosphorylation. Regulation and identification of the phosphorylation sites
-
Gioeli D, Ficarro SB, Kwiek JJ, Aaronson D, Hancock M, Catling AD, White FM, Christian RE, Settlage RE, Shabanowitz J, Hunt DF et al: Androgen receptor phosphorylation. Regulation and identification of the phosphorylation sites. J Biol Chem (2002) 277(32):29304-29314.
-
(2002)
J. Biol. Chem.
, vol.277
, Issue.32
, pp. 29304-29314
-
-
Gioeli, D.1
Ficarro, S.B.2
Kwiek, J.J.3
Aaronson, D.4
Hancock, M.5
Catling, A.D.6
White, F.M.7
Christian, R.E.8
Settlage, R.E.9
Shabanowitz, J.10
Hunt, D.F.11
-
18
-
-
0141697291
-
'In-vivo' phosphorylation and palmitoylation cascades of endothelin receptors A and B in human lung fibroblasts
-
manuscript submitted
-
Stannard C, Soskic V, Godovac-Zimmermann J: 'In-vivo' phosphorylation and palmitoylation cascades of endothelin receptors A and B in human lung fibroblasts. Biochemistry (2003): manuscript submitted.
-
(2003)
Biochemistry
-
-
Stannard, C.1
Soskic, V.2
Godovac-Zimmermann, J.3
-
19
-
-
0036490141
-
Mass spectrometry-based methods for phosphorylation site mapping of hyperphosphorylated proteins applied to Net1, a regulator of exit from mitosis in yeast
-
Loughrey Chen S, Huddleston MJ, Shou W, Deshaies RJ, Annan RS, Carr SA: Mass spectrometry-based methods for phosphorylation site mapping of hyperphosphorylated proteins applied to Net1, a regulator of exit from mitosis in yeast. Mol Cell Proteomics (2002) 1(3):186-196.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.3
, pp. 186-196
-
-
Loughrey Chen, S.1
Huddleston, M.J.2
Shou, W.3
Deshaies, R.J.4
Annan, R.S.5
Carr, S.A.6
-
20
-
-
0037099664
-
Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization-postsource decay, and nanoelectrospray ionization tandem mass spectrometry
-
Zhang K, Tang H, Huang L, Blankenship JW, Jones PR, Xiang F, Yau PM, Burlingame AL: Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization-postsource decay, and nanoelectrospray ionization tandem mass spectrometry. Anal Biochem (2002) 306(2):259-269.
-
(2002)
Anal. Biochem.
, vol.306
, Issue.2
, pp. 259-269
-
-
Zhang, K.1
Tang, H.2
Huang, L.3
Blankenship, J.W.4
Jones, P.R.5
Xiang, F.6
Yau, P.M.7
Burlingame, A.L.8
-
21
-
-
0036652176
-
Histone acetylation and deacetylation: Identification of acetylation and methylation sites of HeLa histone H4 by mass spectrometry
-
Zhang K, Williams KE, Huang L, Yau P, Siino JS, Bradbury EM, Jones PR, Minch MJ, Burlingame AL: Histone acetylation and deacetylation: Identification of acetylation and methylation sites of HeLa histone H4 by mass spectrometry. Mol Cell Proteomics (2002) 1(7):500-508.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.7
, pp. 500-508
-
-
Zhang, K.1
Williams, K.E.2
Huang, L.3
Yau, P.4
Siino, J.S.5
Bradbury, E.M.6
Jones, P.R.7
Minch, M.J.8
Burlingame, A.L.9
-
22
-
-
0037119624
-
S-nitrosylation of matrix metalloproteinases: Signaling pathway to neuronal cell death
-
(5584)
-
Gu Z, Kaul M, Yan B, Kridel SJ, Cui J, Strongin A, Smith JW, Liddington RC, Lipton SA: S-nitrosylation of matrix metalloproteinases: Signaling pathway to neuronal cell death. Science (2002) 297(5584):1186-1190.
-
(2002)
Science
, vol.297
, pp. 1186-1190
-
-
Gu, Z.1
Kaul, M.2
Yan, B.3
Kridel, S.J.4
Cui, J.5
Strongin, A.6
Smith, J.W.7
Liddington, R.C.8
Lipton, S.A.9
-
23
-
-
0037143669
-
Tyrosine sulfation of CCR5 N-terminal peptide by tyrosylprotein sulfotransferases 1 and 2 follows a discrete pattern and temporal sequence
-
Seibert C, Cadene M, Sanfiz A, Chait BT, Sakmar TP: Tyrosine sulfation of CCR5 N-terminal peptide by tyrosylprotein sulfotransferases 1 and 2 follows a discrete pattern and temporal sequence. Proc Natl Acad Sci USA (2002) 99(17):11031-11036.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.17
, pp. 11031-11036
-
-
Seibert, C.1
Cadene, M.2
Sanfiz, A.3
Chait, B.T.4
Sakmar, T.P.5
-
24
-
-
18444391517
-
Shotgun identification of protein modifications from protein complexes and lens tissue
-
MacCoss MJ, McDonald WH, Saraf A, Sadygov R, Clark JM, Tasto JJ, Gould KL, Wolters D, Washburn M, Weiss A, Clark JI et al: Shotgun identification of protein modifications from protein complexes and lens tissue. Proc Natl Acad Sci USA (2002) 99(12):7900-7905.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.12
, pp. 7900-7905
-
-
MacCoss, M.J.1
McDonald, W.H.2
Saraf, A.3
Sadygov, R.4
Clark, J.M.5
Tasto, J.J.6
Gould, K.L.7
Wolters, D.8
Washburn, M.9
Weiss, A.10
Clark, J.I.11
-
25
-
-
0037338365
-
Proteomic analysis of post-translational modifications
-
Mann M, Jensen ON: Proteomic analysis of post-translational modifications. Nat Biotechnol (2003) 21(3):255-261.
-
(2003)
Nat. Biotechnol.
, vol.21
, Issue.3
, pp. 255-261
-
-
Mann, M.1
Jensen, O.N.2
-
26
-
-
0037133237
-
Top-down mass spectrometry of a 29-kDa protein for characterization of any posttranslational modification to within one residue
-
Sze SK, Ge Y, Oh H, McLafferty FW: Top-down mass spectrometry of a 29-kDa protein for characterization of any posttranslational modification to within one residue. Proc Natl Acad Sci USA (2002) 99(4):1774-1779.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.4
, pp. 1774-1779
-
-
Sze, S.K.1
Ge, Y.2
Oh, H.3
McLafferty, F.W.4
-
27
-
-
0036315870
-
'Top down' protein characterization via tandem mass spectrometry
-
Reid GE, McLuckey SA: 'Top down' protein characterization via tandem mass spectrometry. J Mass Spectrom (2002) 37(7):663-675.
-
(2002)
J. Mass Spectrom.
, vol.37
, Issue.7
, pp. 663-675
-
-
Reid, G.E.1
McLuckey, S.A.2
-
28
-
-
0036748309
-
Fourier-transform mass spectrometry for automated fragmentation and identification of 5-20 kDa proteins in mixtures
-
Johnson JR, Meng F, Forbes AJ, Cargile BJ, Kelleher NL: Fourier-transform mass spectrometry for automated fragmentation and identification of 5-20 kDa proteins in mixtures. Electrophoresis (2002) 23(18):3217-3223.
-
(2002)
Electrophoresis
, vol.23
, Issue.18
, pp. 3217-3223
-
-
Johnson, J.R.1
Meng, F.2
Forbes, A.J.3
Cargile, B.J.4
Kelleher, N.L.5
-
29
-
-
0037294003
-
Affinity purification-mass spectrometry. Powerful tools for the characterization of protein complexes
-
Bauer A, Kuster B: Affinity purification-mass spectrometry. Powerful tools for the characterization of protein complexes. Eur J Biochem (2003) 270(4):570-578.
-
(2003)
Eur. J. Biochem.
, vol.270
, Issue.4
, pp. 570-578
-
-
Bauer, A.1
Kuster, B.2
-
30
-
-
0037370399
-
The study of macromolecular complexes by quantitative proteomics
-
Ranish JA, Yi EC, Leslie DM, Purvine SO, Goodlett DR, Eng J, Aebersold R: The study of macromolecular complexes by quantitative proteomics. Nat Genet (2003) 33(3):349-355.
-
(2003)
Nat. Genet.
, vol.33
, Issue.3
, pp. 349-355
-
-
Ranish, J.A.1
Yi, E.C.2
Leslie, D.M.3
Purvine, S.O.4
Goodlett, D.R.5
Eng, J.6
Aebersold, R.7
-
31
-
-
0037093469
-
2C receptors: A proteomic approach
-
2C receptors: A proteomic approach. EMBO J (2002) 21(10):2332-2342.
-
(2002)
EMBO J.
, vol.21
, Issue.10
, pp. 2332-2342
-
-
Becamel, C.1
Alonso, G.2
Galeotti, N.3
Demey, E.4
Jouin, P.5
Ullmer, C.6
Dumuis, A.7
Bookaert, J.8
Marin, P.9
-
32
-
-
0036615611
-
Protein kinase Cε signaling complexes include metabolism- and transcription/translation-related proteins: Complimentary separation techniques with LC/MS/MS
-
Edmondson RD, Vondriska TM, Biederman KJ, Zhang J, Jones RC, Zheng Y, Allen DL, Xiu JX, Cardwell EM, Pisano MR, Ping P: Protein kinase Cε signaling complexes include metabolism- and transcription/translation-related proteins: Complimentary separation techniques with LC/MS/MS. Mol Cell Proteomics (2002) 1(6):421-433.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.6
, pp. 421-433
-
-
Edmondson, R.D.1
Vondriska, T.M.2
Biederman, K.J.3
Zhang, J.4
Jones, R.C.5
Zheng, Y.6
Allen, D.L.7
Xiu, J.X.8
Cardwell, E.M.9
Pisano, M.R.10
Ping, P.11
-
33
-
-
0347298692
-
Extensive temporally regulated reorganization of the lipid raft proteome following T-cell antigen receptor triggering
-
Bini L, Pacini S, Liberatori S, Valensin S, Pellegrini M, Raggiaschi R, Pallini V, Baldari CT: Extensive temporally regulated reorganization of the lipid raft proteome following T-cell antigen receptor triggering. Biochem J (2003) 369(Pt 2):301-309.
-
(2003)
Biochem. J.
, vol.369
, Issue.PART 2
, pp. 301-309
-
-
Bini, L.1
Pacini, S.2
Liberatori, S.3
Valensin, S.4
Pellegrini, M.5
Raggiaschi, R.6
Pallini, V.7
Baldari, C.T.8
-
34
-
-
0037044851
-
Proteomic analysis of a detergent-resistant membrane skeleton from neutrophil plasma membranes
-
Nebl T, Pestonjamasp KN, Leszyk JD, Crowley JL, Oh SW, Luna EJ: Proteomic analysis of a detergent-resistant membrane skeleton from neutrophil plasma membranes. J Biol Chem (2002) 277(45):43399-43409.
-
(2002)
J. Biol. Chem.
, vol.277
, Issue.45
, pp. 43399-43409
-
-
Nebl, T.1
Pestonjamasp, K.N.2
Leszyk, J.D.3
Crowley, J.L.4
Oh, S.W.5
Luna, E.J.6
-
35
-
-
0037337310
-
A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
-
Blagoev B, Kratchmarova I, Ong SE, Nielsen M, Foster U, Mann M: A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nat Biotechnol (2003) 21(3):315-318.
-
(2003)
Nat. Biotechnol.
, vol.21
, Issue.3
, pp. 315-318
-
-
Blagoev, B.1
Kratchmarova, I.2
Ong, S.E.3
Nielsen, M.4
Foster, U.5
Mann, M.6
-
36
-
-
0036500132
-
Functional proteomics of transforming growth factor-β1-stimulated Mv1Lu epithelial cells: Rad51 as a target of TGFβ1-dependent regulation of DNA repair
-
Kanamoto T, Hellman U, Heldin CH, Souchelnytskyi S: Functional proteomics of transforming growth factor-β1-stimulated Mv1Lu epithelial cells: Rad51 as a target of TGFβ1-dependent regulation of DNA repair. EMBO J (2002) 21(5):1219-1230.
-
(2002)
EMBO J.
, vol.21
, Issue.5
, pp. 1219-1230
-
-
Kanamoto, T.1
Hellman, U.2
Heldin, C.H.3
Souchelnytskyi, S.4
-
37
-
-
0036244045
-
Proteomic analysis of cytokine induced proteins in human intestinal epithelial cells: Implications for inflammatory bowel diseases
-
Barcelo-Batllori S, Andre M, Servis C, Levy N, Takikawa O, Michetti P, Reymond M, Felley-Bosco E: Proteomic analysis of cytokine induced proteins in human intestinal epithelial cells: Implications for inflammatory bowel diseases. Proteomics (2002) 2(5):551-560.
-
(2002)
Proteomics
, vol.2
, Issue.5
, pp. 551-560
-
-
Barcelo-Batllori, S.1
Andre, M.2
Servis, C.3
Levy, N.4
Takikawa, O.5
Michetti, P.6
Reymond, M.7
Felley-Bosco, E.8
-
38
-
-
0036435663
-
IL-1β induced protein changes in diabetes prone BB rat islets of Langerhans identified by proteome analysis
-
Sparre T, Bjerre Christensen U, Mose Larsen P, Fey SJ, Wrzesinski K, Roepstorff P, Mandrup-Poulsen T, Pociot F, Karlsen AE, Nerup J: IL-1β induced protein changes in diabetes prone BB rat islets of Langerhans identified by proteome analysis. Diabetologia (2002) 45(11):1550-1561.
-
(2002)
Diabetologia
, vol.45
, Issue.11
, pp. 1550-1561
-
-
Sparre, T.1
Bjerre Christensen, U.2
Mose Larsen, P.3
Fey, S.J.4
Wrzesinski, K.5
Roepstorff, P.6
Mandrup-Poulsen, T.7
Pociot, F.8
Karlsen, A.E.9
Nerup, J.10
-
39
-
-
0037154107
-
Monitoring of gene expression by functional proteomics: Response of human lung fibroblast cells to stimulation by endothelin-1
-
Predic J, Soskic V, Bradley D, Godovac-Zimmermann J: Monitoring of gene expression by functional proteomics: Response of human lung fibroblast cells to stimulation by endothelin-1. Biochemistry (2002) 41(3):1070-1078.
-
(2002)
Biochemistry
, vol.41
, Issue.3
, pp. 1070-1078
-
-
Predic, J.1
Soskic, V.2
Bradley, D.3
Godovac-Zimmermann, J.4
-
40
-
-
0036692065
-
Dynamics of protein turnover, a missing dimension in proteomics
-
Pratt JM, Petty J, Riba-Garcia I, Robertson DH, Gaskell SJ, Oliver SG, Beynon RJ: Dynamics of protein turnover, a missing dimension in proteomics. Mol Cell Proteomics (2002) 1(8):579-591.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.8
, pp. 579-591
-
-
Pratt, J.M.1
Petty, J.2
Riba-Garcia, I.3
Robertson, D.H.4
Gaskell, S.J.5
Oliver, S.G.6
Beynon, R.J.7
-
41
-
-
0036653675
-
Concomitant determination of absolute values of cellular protein amounts, synthesis rates, and turnover rates by quantitative proteome profiling
-
Gerner C, Vejda S, Gelbmann D, Bayer E, Gotzmann J, Schulte-Hermann R, Mikulits W: Concomitant determination of absolute values of cellular protein amounts, synthesis rates, and turnover rates by quantitative proteome profiling. Mol Cell Proteomics (2002) 1(7):528-537.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.7
, pp. 528-537
-
-
Gerner, C.1
Vejda, S.2
Gelbmann, D.3
Bayer, E.4
Gotzmann, J.5
Schulte-Hermann, R.6
Mikulits, W.7
-
42
-
-
0037015610
-
Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry
-
(6906)
-
Lasonder E, Ishihama Y, Andersen JS, Vermunt AM, Pain A, Sauerwein RW, Eling WM, Hall N, Waters AP, Stunnenberg HG, Mann M: Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry. Nature (2002) 419(6906):537-542.
-
(2002)
Nature
, vol.419
, pp. 537-542
-
-
Lasonder, E.1
Ishihama, Y.2
Andersen, J.S.3
Vermunt, A.M.4
Pain, A.5
Sauerwein, R.W.6
Eling, W.M.7
Hall, N.8
Waters, A.P.9
Stunnenberg, H.G.10
Mann, M.11
-
43
-
-
0037015602
-
A proteomic view of the Plasmodium falciparum life cycle
-
(6906)
-
Florens L, Washburn MP, Raine JD, Anthony RM, Grainger M, Haynes JD, Moch JK, Muster N, Sacci JB, Tabb DL, Witney AA et al: A proteomic view of the Plasmodium falciparum life cycle. Nature (2002) 419(6906):520-526.
-
(2002)
Nature
, vol.419
, pp. 520-526
-
-
Florens, L.1
Washburn, M.P.2
Raine, J.D.3
Anthony, R.M.4
Grainger, M.5
Haynes, J.D.6
Moch, J.K.7
Muster, N.8
Sacci, J.B.9
Tabb, D.L.10
Witney, A.A.11
-
44
-
-
0037143692
-
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags
-
Lipton MS, Pasa-Tolic L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C et al: Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags. Proc Natl Acad Sci USA (2002) 99(17):11049-11054.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.17
, pp. 11049-11054
-
-
Lipton, M.S.1
Pasa-Tolic, L.2
Anderson, G.A.3
Anderson, D.J.4
Auberry, D.L.5
Battista, J.R.6
Daly, M.J.7
Fredrickson, J.8
Hixson, K.K.9
Kostandarithes, H.10
Masselon, C.11
-
45
-
-
0036923543
-
Gene expression profiling using advanced mass spectrometric approaches
-
Pasa-Tolic L, Lipton MS, Masselon CD, Anderson GA, Shen Y, Tolic N, Smith RD: Gene expression profiling using advanced mass spectrometric approaches. J Mass Spectrom (2002) 37(12):1185-1198.
-
(2002)
J. Mass Spectrom.
, vol.37
, Issue.12
, pp. 1185-1198
-
-
Pasa-Tolic, L.1
Lipton, M.S.2
Masselon, C.D.3
Anderson, G.A.4
Shen, Y.5
Tolic, N.6
Smith, R.D.7
-
46
-
-
0036545614
-
Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
-
Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, Hood L, Aebersold R: Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol Cell Proteomics (2002) 1(4):323-333.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.4
, pp. 323-333
-
-
Griffin, T.J.1
Gygi, S.P.2
Ideker, T.3
Rist, B.4
Eng, J.5
Hood, L.6
Aebersold, R.7
-
47
-
-
0036549767
-
Discordant protein and mRNA expression in lung adenocarcinomas
-
Chen G, Gharib TG, Huang CC, Taylor JM, Misek DE, Kardia SL, Giordano TJ, Iannettoni MD, Orringer MB, Hanash SM, Beer DG: Discordant protein and mRNA expression in lung adenocarcinomas. Mol Cell Proteomics (2002) 1(4):304-313.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.4
, pp. 304-313
-
-
Chen, G.1
Gharib, T.G.2
Huang, C.C.3
Taylor, J.M.4
Misek, D.E.5
Kardia, S.L.6
Giordano, T.J.7
Iannettoni, M.D.8
Orringer, M.B.9
Hanash, S.M.10
Beer, D.G.11
-
48
-
-
0036960169
-
Integrated genomic and proteomic analysis of signaling pathways in dendritic cell differentiation and maturation
-
Richards J, Le Naour F, Hanash S, Beretta L: Integrated genomic and proteomic analysis of signaling pathways in dendritic cell differentiation and maturation. Ann NY Acad Sci (2002) 975:91-100.
-
(2002)
Ann. NY Acad. Sci.
, vol.975
, pp. 91-100
-
-
Richards, J.1
Le Naour, F.2
Hanash, S.3
Beretta, L.4
-
49
-
-
0038015626
-
Changes in the proteome associated with the action of bcr-abl tyrosine kinase are not related to transcriptional regulation
-
Smith DL, Evans CA, Pierce A, Gaskell SJ, Whetton AD: Changes in the proteome associated with the action of bcr-abl tyrosine kinase are not related to transcriptional regulation. Mol Cell Proteomics (2002) 1(11):876-884.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.11
, pp. 876-884
-
-
Smith, D.L.1
Evans, C.A.2
Pierce, A.3
Gaskell, S.J.4
Whetton, A.D.5
-
50
-
-
0039846981
-
Functional proteomics analysis of signal transduction pathways of the platelet-derived growth factor β receptor
-
Soskic V, Godach M, Poznanovic S, Boehmer FD, Godovac-Zimmermann J: Functional proteomics analysis of signal transduction pathways of the platelet-derived growth factor β receptor. Biochemistry (1999) 38(6):1757-1764.
-
(1999)
Biochemistry
, vol.38
, Issue.6
, pp. 1757-1764
-
-
Soskic, V.1
Godach, M.2
Poznanovic, S.3
Boehmer, F.D.4
Godovac-Zimmermann, J.5
-
51
-
-
0034931864
-
Fingerprinting of signal transduction pathways using a combination of anti-phosphotyrosine immunoprecipitations and two-dimensional polyacrylamide gel electrophoresis
-
Stancato LF, Petricoin EF 3rd: Fingerprinting of signal transduction pathways using a combination of anti-phosphotyrosine immunoprecipitations and two-dimensional polyacrylamide gel electrophoresis. Electrophoresis (2001) 22(10):2120-2124.
-
(2001)
Electrophoresis
, vol.22
, Issue.10
, pp. 2120-2124
-
-
Stancato, L.F.1
Petricoin E.F. III2
-
52
-
-
0036652968
-
A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: Identification of a novel protein, Frigg, as a protein kinase A substrate
-
Gronborg M, Kristiansen TZ, Stensballe A, Andersen JS, Ohara O, Mann M, Jensen ON, Pandey A: A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: Identification of a novel protein, Frigg, as a protein kinase A substrate. Mol Cell Proteomics (2002) 1(7):517-527.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.7
, pp. 517-527
-
-
Gronborg, M.1
Kristiansen, T.Z.2
Stensballe, A.3
Andersen, J.S.4
Ohara, O.5
Mann, M.6
Jensen, O.N.7
Pandey, A.8
-
53
-
-
15944426382
-
Towards targeting signaling networks by functional phosphoproteomics
-
Godovac-Zimmermann J, Brown LR: Towards targeting signaling networks by functional phosphoproteomics. Targets (2002) 1:169-176.
-
(2002)
Targets
, vol.1
, pp. 169-176
-
-
Godovac-Zimmermann, J.1
Brown, L.R.2
-
54
-
-
1842868514
-
Proteomic analysis of stable protein methylation in lymphoblastoid cells
-
Huang HM, Tam MF, Tam TC, Chen DH, Hsieh M, Li C: Proteomic analysis of stable protein methylation in lymphoblastoid cells. J Biochem (2002) 132(5):813-818.
-
(2002)
J. Biochem.
, vol.132
, Issue.5
, pp. 813-818
-
-
Huang, H.M.1
Tam, M.F.2
Tam, T.C.3
Chen, D.H.4
Hsieh, M.5
Li, C.6
-
55
-
-
0036401454
-
Identification of S-glutathionylated cellular proteins during oxidative stress and constitutive metabolism by affinity purification and proteomic analysis
-
Lind C, Gerdes R, Hamnell Y, Schuppe-Koistinen I, von Lowenhielm HB, Holmgren A, Cotgreave IA: Identification of S-glutathionylated cellular proteins during oxidative stress and constitutive metabolism by affinity purification and proteomic analysis. Arch Biochem Biophys (2002) 406(2):229-240.
-
(2002)
Arch. Biochem. Biophys.
, vol.406
, Issue.2
, pp. 229-240
-
-
Lind, C.1
Gerdes, R.2
Hamnell, Y.3
Schuppe-Koistinen, I.4
von Lowenhielm, H.B.5
Holmgren, A.6
Cotgreave, I.A.7
-
56
-
-
18344390036
-
Identification by redox proteomics of glutathionylated proteins in oxidatively stressed human T lymphocytes
-
Fratelli M, Demol H, Puype M, Casagrande S, Eberini I, Salmona M, Bonetto V, Mengozzi M, Duffieux F, Miclet E, Bachi A et al: Identification by redox proteomics of glutathionylated proteins in oxidatively stressed human T lymphocytes. Proc Natl Acad Sci USA (2002) 99(6):3505-3510.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.6
, pp. 3505-3510
-
-
Fratelli, M.1
Demol, H.2
Puype, M.3
Casagrande, S.4
Eberini, I.5
Salmona, M.6
Bonetto, V.7
Mengozzi, M.8
Duffieux, F.9
Miclet, E.10
Bachi, A.11
-
57
-
-
0035834101
-
Proteomic method identifies proteins nitrated in vivo during inflammatory challenge
-
Aulak KS, Miyagi M, Yan L, West KA, Massillon D, Crabb JW, Stuehr DJ: Proteomic method identifies proteins nitrated in vivo during inflammatory challenge. Proc Natl Acad Sci USA (2001) 98(21):12056-12061.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, Issue.21
, pp. 12056-12061
-
-
Aulak, K.S.1
Miyagi, M.2
Yan, L.3
West, K.A.4
Massillon, D.5
Crabb, J.W.6
Stuehr, D.J.7
-
58
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
(6868)
-
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L et al: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature (2002) 415(6868):180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
-
59
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
(6868)
-
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M et al: Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature (2002) 415(6868):141-147.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
-
60
-
-
0036047911
-
Charting the protein complexome in yeast by mass spectrometry
-
Deshaies RJ, Seol JH, McDonald WH, Cope G, Lyapina S, Shevchenko A, Shevchenko A, Verma R, Yates JR 3rd: Charting the protein complexome in yeast by mass spectrometry. Mol Cell Proteomics (2002) 1(1):3-10.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.1
, pp. 3-10
-
-
Deshaies, R.J.1
Seol, J.H.2
McDonald, W.H.3
Cope, G.4
Lyapina, S.5
Shevchenko, A.6
Shevchenko, A.7
Verma, R.8
Yates J.R. III9
-
61
-
-
0037294859
-
Proteome analysis at the level of subcellular structures
-
Dreger M: Proteome analysis at the level of subcellular structures. Eur J Biochem (2003) 270(4):589-599.
-
(2003)
Eur. J. Biochem.
, vol.270
, Issue.4
, pp. 589-599
-
-
Dreger, M.1
-
63
-
-
0034789979
-
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
-
Han DK, Eng J, Zhou H, Aebersold R: Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat Biotechnol (2001) 19(10):946-951.
-
(2001)
Nat. Biotechnol.
, vol.19
, Issue.10
, pp. 946-951
-
-
Han, D.K.1
Eng, J.2
Zhou, H.3
Aebersold, R.4
-
64
-
-
0036119432
-
A matrix-assisted laser desorption ionization post-source decay (MALDI-PSD) analysis of proteins released from isolated liver mitochondria treated with recombinant truncated Bid
-
Van Loo G, Demol H, van Gurp M, Hoorelbeke B, Schotte P, Beyaert R, Zhivotovsky B, Gevaert K, Declercq W, Vandekerckhove J, Vandenabeele P: A matrix-assisted laser desorption ionization post-source decay (MALDI-PSD) analysis of proteins released from isolated liver mitochondria treated with recombinant truncated Bid. Cell Death Differ (2002) 9(3):301-308.
-
(2002)
Cell Death Differ.
, vol.9
, Issue.3
, pp. 301-308
-
-
Van Loo, G.1
Demol, H.2
van Gurp, M.3
Hoorelbeke, B.4
Schotte, P.5
Beyaert, R.6
Zhivotovsky, B.7
Gevaert, K.8
Declercq, W.9
Vandekerckhove, J.10
Vandenabeele, P.11
-
65
-
-
0141697311
-
Nuclear protein profiling of NRK-49F rat kidney fibrovlast cells: Effects of hypoxic conditions on nuclear protein abundance levels
-
manuscript submitted
-
Shakib K, Soskic V, Normann JF, Fine LG, Godovac-Zimmermann J: Nuclear protein profiling of NRK-49F rat kidney fibrovlast cells: Effects of hypoxic conditions on nuclear protein abundance levels. Biochemistry (2003): manuscript submitted.
-
(2003)
Biochemistry
-
-
Shakib, K.1
Soskic, V.2
Normann, J.F.3
Fine, L.G.4
Godovac-Zimmermann, J.5
-
66
-
-
0036678119
-
Enzyme activity profiles of the secreted and membrane proteome that depict cancer cell invasiveness
-
Jessani N, Liu Y, Humphrey M, Cravatt BF: Enzyme activity profiles of the secreted and membrane proteome that depict cancer cell invasiveness. Proc Natl Acad Sci USA (2002) 99(16):10335-10340.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.16
, pp. 10335-10340
-
-
Jessani, N.1
Liu, Y.2
Humphrey, M.3
Cravatt, B.F.4
-
67
-
-
0036051482
-
Chemical approaches for functionally probing the proteome
-
Greenbaum D, Baruch A, Hayrapetian L, Darula Z, Burlingame A, Medzihradszky KF, Bogyo M: Chemical approaches for functionally probing the proteome. Mol Cell Proteomics (2002) 1(1):60-68.
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.1
, pp. 60-68
-
-
Greenbaum, D.1
Baruch, A.2
Hayrapetian, L.3
Darula, Z.4
Burlingame, A.5
Medzihradszky, K.F.6
Bogyo, M.7
-
68
-
-
0036775490
-
Chemistry-based functional proteomics reveals novel members of the deubiquitinating enzyme family
-
Borodovsky A, Ovaa H, Kolli N, Gan-Erdene T, Wilkinson KD, Ploegh HL, Kessler BM: Chemistry-based functional proteomics reveals novel members of the deubiquitinating enzyme family. Chem Biol (2002) 9(10):1149-1159.
-
(2002)
Chem. Biol.
, vol.9
, Issue.10
, pp. 1149-1159
-
-
Borodovsky, A.1
Ovaa, H.2
Kolli, N.3
Gan-Erdene, T.4
Wilkinson, K.D.5
Ploegh, H.L.6
Kessler, B.M.7
-
69
-
-
10744229217
-
Ultra-high sensitivity multi-photon imaging in proteomics analyses of prostate cancer
-
manuscript submitted
-
Cahill MS, Schrattenholz A, Wozny W, Volkovitsky P, Osetrov S, Sastri C, Stegmann W, Schroer K, Klocker H, Rogatsch H, Drukier AK et al: Ultra-high sensitivity multi-photon imaging in proteomics analyses of prostate cancer. Nat Biotechnol (2003): manuscript submitted.
-
(2003)
Nat. Biotechnol.
-
-
Cahill, M.S.1
Schrattenholz, A.2
Wozny, W.3
Volkovitsky, P.4
Osetrov, S.5
Sastri, C.6
Stegmann, W.7
Schroer, K.8
Klocker, H.9
Rogatsch, H.10
Drukier, A.K.11
|